RNA id: TU662786


Basic Information

Item Value
RNA id TU662786
length 2274
lncRNA type read_through
GC content 0.36
exon number 4
gene id LOC110528803
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18111715 ~ 18127563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTATTGTTTcctacatttctctctctttctgtcgtaTAACAAATCACATTTATAATAGAACAACAAATATCTGAATTTATCATTTTCCACAGATGAGTCGATAAACTCTTAAACATAAACTTGTCTTCAGCTATCAATACTAAATTTAAAGGCAGATTTCCACAAGTAAAGTGGCCAAaatttgatattgatattgatCCATTCTTATTTCTCTAATAAGTAAAATCCATCAACACAGTACAATGGGATAGACGTCAACGACATAAAAACCACGAGTTTTCACTTACCCCAATTCAAAGTTTTTAGTAACATATTAGTAACACTTTACACATGAATAAAATATACTATGTATAGTACATCGTTAAGAGTCTTCACTTTATTACATTTTGCCCTTTCTCACAAAGCTATTATTGCATTTCTATCAATTAACCACAACAGCCGGTAGAAAGACACTGCTAAGTTTGATTCACCTCGGTGCAGGTGTTTAAATACAGTTACTGGTAGTTCAGAATCAGAACACAACATCACTTTGTAGGTGTCAAACAAACTGGAATGCAGGAGAAGATATCACATAACGTACCGACAGGGTGACTGGAACAGTATGCCGGTAAGACACATTTGTATGCCCGTGGAacacacatgtacagtgccttcctgaaagtattcacaccccttgactttttccacatttcgtgtCACAAAGGGATTAAAATGAATTTAATTGTAAAATTCAAATCtattaataattttaaaaaatacagtaatatatcttgattagataagtattcaactccctgagtcaatacattttagcttttcattttgaatGAATTTGTTAATTTcaaaaaacaattccactttgacattagaggtTATTGTTTGTAGGCCACTGACCAAAAAatcaaaatggggaaaaagtcaaggggtgtgaatactttctgaaggcactgtatctctacATGGTCATCAAACGACTTCAAAGACAATTTGATCGTTAAAACCAGAGATCCTATAAATTACTACATGGTGTTCATTGAAAGTCTATGGTTAAAACCCTAAAGGAATCACATTCCCAataggtacagaatggcagggcTATGCTAACTGGAATGTAATGGTCCCCAATGCCTGAAATATAACACTGGCCTGTAATGGAGAAAGAATACTATCAACAAATCTTCTGGAAAATGGCAGTGAAAATTTTTACAAATGAGATTTCAAGAAAAAAACTTGTACATTTAACACTTTAATTtgatacatatacagtatactgtttTCGTATCGTTAAGTGCAGAGACCCGACAGTGATGTCAAATTACAAAACTAAACACATCGATTATTCCATGAACAAGATTTTCGTTGTATACTGTAATTTACTTTTTTTAAAGGATTACTATGctgaaaaaaatagaaaaaacatacaaaatacaAACGATTCCATTAAAAAGTAAGGTTGCTTTAAAAACTATTTGGTTgagacagatgtaggatcttaatttgatcaccctgttgcagaaaTACTAAACCTGTAGTGTATTTACGGTTTAAAAAGCCGTCTGAAGTTTTGTAATTTCCGCgtaaaaatgtcagacttgattttacCTTATGAAAATATGTTCAGcccttacaaaaatgtccattaattataatccatacttcaggattattttcctgctgtagcaaacctgctcaaattaagatcttacatctgtcaTAAATTGGCCCACGGGTAGATAGACATTATAATATGAATTCCTTGCTTCCTCTGTTGCTGGTATCACCATACATTGACATACATAGAAAATAATCACAGTTAATGTTTGTTGGTTCCTCCATAGGGTAACACTGTTTCTAAAAGATTTACAcgagttgcacacacacacacacagtcttacatGACGAGAACGCATGGTGCAGCACAGTTCAGAGGTGGTCGAGTGTGGCACGTTAGGAGTTATTTTCCACAGAACGGTGACGAAGCCGGTATGGATCACAAACTCGTCTCTCTGTCCAACTTTGAGTCCTTCCTCTTTTGTCTTCTCTCGCAACCACTTTTGGAGCTTGGCTCCTTCTTGGCGCTGTCACTGGGACTAATACTATTCCACACGTTCCCGAAGGAGCCTTTGGACATCTCGTCGGAAATGTTCACCGTCGCGGGATCGCTCTTGTAATTTCCTTCCAGTGGCAAAGTAactatcccctcctcctccactataaTACTGGGCTcatcctcttcttctccttcctctagTTTCTTCTTCTTCCACTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662792 lncRNA upstream 532 18123191 ~ 18123429 (+) True G580851
TU662751 lncRNA upstream 90957 18032764 ~ 18033004 (+) True G580822
TU662738 lncRNA upstream 118440 18005321 ~ 18005521 (+) True G580809
TU662732 lncRNA upstream 135524 17988222 ~ 17988437 (+) True G580803
TU662731 lncRNA upstream 136112 17987271 ~ 17987849 (+) True G580802
TU662818 lncRNA downstream 42291 18169854 ~ 18170286 (+) True G580877
TU662846 lncRNA downstream 67147 18194710 ~ 18195907 (+) True G580896
TU662847 lncRNA downstream 68816 18196379 ~ 18196603 (+) True G580897
TU662849 lncRNA downstream 73547 18201110 ~ 18201622 (+) True G580899
TU662868 lncRNA downstream 133121 18260684 ~ 18261287 (+) False G580918
NM_001124700.1 mRNA upstream 12310 18108817 ~ 18111651 (+) True gcg2
XM_036981857.1 mRNA upstream 12351 18108790 ~ 18111610 (+) False gcg2
XM_036982854.1 mRNA upstream 16725 18096457 ~ 18107236 (+) True LOC110527424
XM_036982847.1 mRNA upstream 43962 18002333 ~ 18079999 (+) False LOC110527422
XM_021608692.2 mRNA downstream 75088 18202651 ~ 18204833 (+) True LOC110527430
XM_021608696.2 mRNA downstream 77738 18205301 ~ 18242163 (+) False LOC110527431
XM_021608695.2 mRNA downstream 89565 18217128 ~ 18238944 (+) False LOC110527431
XM_021608694.2 mRNA downstream 89568 18217131 ~ 18242163 (+) True LOC110527431
XM_036982862.1 mRNA downstream 277191 18404754 ~ 18495689 (+) False LOC110527437
TU662252 other upstream 307113 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 443293 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 723428 17398793 ~ 17400533 (+) True G580179
TU661990 other upstream 789832 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU661420 other upstream 1026421 17094595 ~ 17097540 (+) True LOC110527403
TU662969 other downstream 364664 18492227 ~ 18492909 (+) True G580997
TU664011 other downstream 849115 18976678 ~ 18976999 (+) True G581976
TU665478 other downstream 1890292 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 2111348 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 2953265 21080828 ~ 21082615 (+) True G584643

Expression Profile