RNA id: XM_021608696.2


Basic Information

Item Value
RNA id XM_021608696.2
length 4349
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110527431
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18205301 ~ 18242163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATTTACTTCTCTTGTCCCCTTCAAGTTTATTACATTTCACAAAAATACCCcccccaaataaaaataaataacattacTATCCAGGTGAGATCACAtctggcagtgattgggagtcccattgggctgcgcacaattggcccagcattgtccggttttggcggggtaggtcgtcattgaaaaaatactttgttcttaactgacttgcctagttaaataaaggttaagtaaattAATAAAAATACATCAAGAATGTCATAGTAGAGATCAAAATATGTTGAATGCAATTTTGTTGCAGACATTAGTAAGCTTTTCTATTGACTAAAAAAGGCCCAAGGCCCAGCATCGACGTCACTCACCCTTCCCCAGTCCCTACGGGATGGGGTGCATTGAATTCGGGGAGAGCGTTCGTGCACTGGTGCTCCAGCGCGCGACCTGCTACCCTGCACGAAACAGCTCCCTGCTTGCATAACTTTTTGATACATCGCATCCGCCAAGCACTGAAGTTCTACGAAAGTAACACAATGGgTTGCTTCGAATGCTGCATCAAGTGTCTGGGCGGCGTGCCCTACGCCTCGCTGGTGGCCACCATCCTCTGTTTCTCGGGCGTGGCTCTGTTCTGCGGGTGTGGTCACGTGGCGCTGACCGGCACACTGACCATGCTGGAGAATCACTTCTCTCAGATCACCACTGACCACGCCACCCTCACCATCGTGATCCAGACCATGCAGTACGTCATCTACGGCATTGCCTCCTTCTTCTTTGTTTATGGGATCATCCTGCTGGCTGAGGGCTTCTACACCACCAGCGCCGTCAAGAAGGAGCTGCAGAGCCAGTTCAAGACCACCGTGTGTGGCCGCTGCATCACAGCCACGTTTGTGTTCCTTACGTATATCCTGGGCCTGGCCTTCCTGGGGATCTTTGGCTTCTCAGCCATTCCCGTCTTCCTCTTCTACAACATGTGGACTACCTGTGCTGCCATGAAGTCCCCCATGGCCAACATCACCGATCCTGACTCCATCTGTGTGGACGTCAGGCAGTACGGTATTATTCCATGGAATGCGACACCCGGAAAAGCCTGCGGATCTACACTAGGAGACATCTGTAGCACCAGCGAGTTCTACCTGTCTTTCCACCTGTACATTGTTGCGTGTGCTGGGGCAGGCGCCACCCTCATTGCATTGatCCACTATCTGATGATCCTGTCGGCAAACTGGGCCTACCTGAGGAGCTCCTGCAACCAGAACGAGTACCAGGACATCAAGACAAAGGACGACGACGTGGAGGAAGGTGGCTCCAAGGAGGGTCTCAACTCCTCTTACTCATAAGAACCGGCCAACCACCCCTTCACACACTTCCTCAAACCTAACCTCCAACCCCCTTCTGGGTAAAACCAACACCTGGGTCTCCTTCACTATGGGCGGTGTTCTGACTTGAGATATGTTCACTCAACTCAAATTTTCACACTTTGGCTACGTTTACACAGGGAGCACAAATCTGTTattttttcccactaattggtccTATGACCAATCATATCTTTTCACATCAACTCTTTTTCAGAGcttatctgattggtcaaaataccaattagtgaacAAAATAGAATTGGAATTGGATATAATAGATAATAGAATCAGAATTGGACTGAATTGgatcagaattggactgcctgtgtaaatgaAATGCAGCCCATGTCTTCCATTAACATCAATGGACAAGTTGAGTCAAGTCTGAGTTGAGCACACTTTTCTCAAATCTGAATCATGTCCTTTGTCCAAACAGGAGCAAACGAACAGGTATATGAGAAGTTCCTATTGGATGAGCTCAGGTTAGGTGGTACCTCTTCCCGTTTGCTCTCGATTGGACCGTTACTGAGCGCAACCCTGCTGCCATAGCCTAACTGCTCTGAGTCAATcacagcccagcactaacacagcgAATAACCGCCTCACAACAAGGTCACTGTCTGCACAACTCCTGAGGAAGCGTGCCACAAAATGTCCTGTTTCTTTGGTGTtttatatatatgaatatattgtGCGAATGTGTATgtatgaatgtttttttttttttttatactacTGGTCTTCTCTTATTTCTGGTATTTTTCTCCTTTGGTTATCTTATCGCAACCCTGTTTTACCTGATTTAGTTTTTTGCTTTTTTTATGGTAATGCTTGTATCAAAAATATAAAGAAGTAAAGTAGACTTCCAAAACCCATGTAAACATTACATACACAGCATCTCAGGGTGCCTCTCATAGAATATAGTCCTACTATTACGTTAACTTTCCCAATCCTTTGTTGACACCCAGCAATTTCTGTTAAGTAATTCTTCATTTTGGCCTGAGGAGAAAAACGTGTGCTGTACCCTAACCGGATTGGACACATTCACTAATGTGACTGTTGGCCTAAAGCAGCAGTTCTGTCAGCAGCTGTCTGCAGTGTTAACACATTACCTTGACCCGCAAGGGAAacatctagcctggtcccagatctgtttgtgctgtcttgccaactcctatggtcattgtcgtGTTATTATGACCATAGgaattggcaagacagcacagacTGATCTTGGACCAGGCTAGTGAACCTCCACCTAGCCCTCTGTATGGCAGTTTTTCTCTGGAAACGGCATTGCTTCTAAACCCACAGGACTAACCAACACTCAAGGTCAGATTGCCTTGTTCTGTTTGTAAGTGATACATTATACATACCTCAGGTACTAAACCAAAATAAAAACtccactagcctggtcccagatctgtttgtgctttatAGCTCCTATGTTTGGCATGctaatgaccataggagttggcaagacagcgcAAATagctctgggaccaggctaacactTCACTGATTAAGCACACACTTGTTACATGGCAATGCCACAGCTGAAGTGAACATAACAAAAGGCCCAATGTTTGTTCATTGTGTTCATTGTACACAACTGTGAAGGGTGGATTTCTTTCTCCTCCCGGTTTTTGGAATCATACATTCACTTTCCTCAAGACAAGTAAACCCTTAAAGGGGTGAAGTTCACCTGTAAATATACGGACCGCCCCAAAGGGAGTTCCATTGACTGACATCTCCTGAATGTGGAGAGCACGGTCAATGTTTTACCATGCTATTTTACCTTTGATTATCAATATGTAAATGTTTCCTTTTGGAGTATATGTTTAGCATCCAATGACTTGTTCGGCATTAAATATAATAGTAATGTGACATCTTTTAAAACGGTATGTTGTGAGAAGGAAGCAAATACAGTCATGATAGCGGTGGTGCTTGTATtgtatacattttgaaatgtgaagaaaaaaaatgtacaaaatggttttcaatgtttttttttatcagtttTAGGCAGCTGAATCTTTCCCTGGGCTAAAGTAATGAATAACTTGTCTTTGAcattatttgtaattattttaCATTGGCAAGCCAAATGAAAGTGACTCATCTGTCATACTTTTAGGCCTGTTATATGAACAGATGCCGTTTGGATGTTTACAATATAACAAGTCATGAATCTTCTTTTCCCCCGCCCCAGATATCATTTGATTATCATGACCTATTCTATAATAATGATCACTGAGTAGTTCAAGTGCTTCGGACTATAAGTTATCTGCATTTTAGTCTAAATTGAGTTAGTGACAcagccttgttctgttcaatgttctctacctacATTCAGTATACTCTAAATAACATGAATTGGGGTAAGTTCAAACTAATTCAAAAGAATACAAGATAAAAAAAATGGCTGACCCCATTCAAACCAACGAGGGCTCGAAGCTGTAAAGCCAATTATCTCTGAATCATCTTTTTGCAagtagaaccttatagtcccaagttATCTTCCTCACACCAGTGAAACGATGATTTATTTAACTTTCATATGAAAAGGCATGTCGGTATTGTCCACGTGTGCAAACGTCTAAATACTGAAAAAAGGACTATATTCCCATGTGTGTTATGTTTGATATAATACAGTGTGCTTTGCCACCAGGTTGATGTAGGCAAGGGCATGTGCCGTTTCATATAAGATGCGTGTCAGTCAGGGTGTGTTGTCGTTTCCTCGTTATTGCATGAAGGCGACATGACTGTGTCTTTGCAGTTTTTCAGGTGATGTGTAGTCAATTGTACTGACAACTATGGTAGGCAGCGTTTGCCCCCACTCAACTCTTTTTTTAAAAGATATCCATTGTACCTTGATGACATTGTAGACCCTGTAGTTGTTTCATTGTTTTTCTTTTTAAAGTTTTAAATAGTTATATGACTCCTGTATAGTGATGATTTTTGTAACCTTCTCTAGTAAAACCGATATTTTATCGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662849 lncRNA upstream 3679 18201110 ~ 18201622 (+) True G580899
TU662847 lncRNA upstream 8698 18196379 ~ 18196603 (+) True G580897
TU662846 lncRNA upstream 9394 18194710 ~ 18195907 (+) True G580896
TU662818 lncRNA upstream 35015 18169854 ~ 18170286 (+) True G580877
TU662786 lncRNA upstream 77738 18123961 ~ 18127563 (+) True LOC110528803
TU662868 lncRNA downstream 18521 18260684 ~ 18261287 (+) False G580918
TU662869 lncRNA downstream 18521 18260684 ~ 18261454 (+) True G580918
TU662702 lncRNA downstream 54496 18296659 ~ 18299059 (+) False G580784
TU662703 lncRNA downstream 54496 18296659 ~ 18299059 (+) False G580784
TU662704 lncRNA downstream 54496 18296659 ~ 18299059 (+) False G580784
XM_021608692.2 mRNA upstream 468 18202651 ~ 18204833 (+) True LOC110527430
XM_036982855.1 mRNA upstream 80986 18111715 ~ 18124315 (+) False LOC110528803
NM_001124700.1 mRNA upstream 93650 18108817 ~ 18111651 (+) True gcg2
XM_036981857.1 mRNA upstream 93691 18108790 ~ 18111610 (+) False gcg2
XM_036982854.1 mRNA upstream 98065 18096457 ~ 18107236 (+) True LOC110527424
XM_036982862.1 mRNA downstream 162591 18404754 ~ 18495689 (+) False LOC110527437
XM_036982861.1 mRNA downstream 162592 18404755 ~ 18495689 (+) False LOC110527437
XM_036982863.1 mRNA downstream 194907 18437070 ~ 18495689 (+) False LOC110527437
XM_021608707.2 mRNA downstream 281440 18523603 ~ 18581511 (+) False LOC110527438
XM_021608705.2 mRNA downstream 297096 18539259 ~ 18581511 (+) True LOC110527438
TU662252 other upstream 388453 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 524633 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 804768 17398793 ~ 17400533 (+) True G580179
TU661990 other upstream 871172 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU661420 other upstream 1107761 17094595 ~ 17097540 (+) True LOC110527403
TU662969 other downstream 250064 18492227 ~ 18492909 (+) True G580997
TU664011 other downstream 734515 18976678 ~ 18976999 (+) True G581976
TU665478 other downstream 1775692 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 1996748 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 2838665 21080828 ~ 21082615 (+) True G584643

Expression Profile