RNA id: XM_021608699.2


Basic Information

Item Value
RNA id XM_021608699.2
length 2705
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110527434
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18300391 ~ 18311994 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCGCTATACCATGCAAACACTGTTCTCACTTCCTTTTCAGTTTTTAGGTGTCCTGTCGTGCTGATCTGCTATGCGTGGGCTACAGCGATAATAAGTTAACTTGTTAGCTAACTTGCCCCTTGAGGGATAATTGTTGCATCCAAAATCTCCTACTCACATAACCAAATTGCACATAAATATTTAGGACATGCCAAACATCGTGCTTTTCAGCGGGAGCTCCCACCAAGACCTGTCACAAAAAGTGGCTGATCGCCTAGGACTGGAATTGGGGAAAGTGATAACGAAGAAATTCTCCAACCAAGAAACATGCGTGGAGATCGGGGAGAGCGTGCGCGGCGAGGACGTCTACATTGTGCAGAGCGGCTGCGGCGAGATCAACGACAACCTGATGGAGCTGCTGATCATGATTAACGCGTGCAAGATCGCCTCGTCGTCCCGCGTCACCGCTGTCATCCCCTGCTTCCCCTACGCCCGGCAGGACAAAAAAGACAAGAGTCGTGCTCCTATCTCAGCCAAGCTGGTGGCCAACATGCTGTCTGTAGCTGGCGCCGACCACATCATTACAATGGACCTCCACGCTTCACAGATCCAGGGATTCTTCGACATCGCCGTGGACAACCTGTATGCGGAGCCCGCGGTCCTCCAGTGGATCCGGGAGAACATTCCAGAGTGGAAGAACAGTTGCATTGTGTCCCCTGACGCTGGAGGAGCCAAACGAGTGACCTCCATCGCTGACCGTCTGAATGTGGAGTTTGCCCTCATCCACAAAGAGAGGAAGAAGGCCAACGAGGTGGACCGCATGGTCCTGGTCGGAGACGTGAAGGACCGCGTGGCCATCCTGGTCGACGACATGGCCGACACCTGCGGCACCATCTGCAAAGCTGCTGAGAAATTGATTGATGCCGGTGCAATCAAGGTCTACGCTATCCTCACGCACGGCATATTTTCCGGTCCGGCCATCGCACGCATCAACGACGCTCCCTTCGAGGCCGTGGTGGTCACCAACACCATCCCCCAGGAGGAGAAGATGAAGTCTTGCCCAAAGATACAGATCATAGATATAGCCATGATCCTGGCCGAGGCGATCAGGAGAACCCACAATGGCGAGTCGGTGTCCTACCTCTTCAGCCACGTGCCCTTATAAAGGATGGTCACAAGGAAGAGGTCACAATGGCCAATTTAGGCCGTTTCTCTCCTCATGGTCCAATCAGCTCGCACCTTCAGTGGCCACGCCCTCCCGGAAGTCCTTAAACCCTGACGTTTTGGGCCAATTACACGTGAACGGTTCCTAAAGGCCACTCCCACTTTCCCAGCTCCGTTGTTCCGTGTGGAGACCCAAGAAAGAGTATCACCTCTTTGAGACCAGCAAGTTTCTATTTATGCATAATACCATGTTAAGATTTCCTTATTGTTTGTTTTCATTATCATGCTTTGCCACCCAAGGGATCTGGCTGTCATTTTAACCAAAGGTCCATTGCCTAACGATGTTCCTGTTTGTTGTACCTCATTTTTTTGTCCGTTTCACTATAAATGAAAGCATTCCATTGTGTGATGTCACTTCTTGAGTCATCTGACTGTTCTAACCAGCTCTGTGGGGAATCTGCAACGCTGCTGGTTTTAGAGGCAAATTTGTTTCATCAATAGACGCCGATTACGAAATACCAGGGTCCTATTCACTAGACTCAAAACGGTAGCAAACGGGGAGGGACTATCTATCCgatgttttgctacggtgtgtgCTAATCAATGCCACCCAGGGTTGTTTAGTCAtcaacagctgatttttaattcCTTTTAACCAGCAACATTTGGTTAGTGTTGGAGTTCAGTTTTTTTCTCAGAAAGATCCAGAGTAGAGGCTGTATTTGTTCAACCAGCAGATACCTACGTAATGTCTATAAGCGTCTAGAATTGTCTCCTTAAAGTCCCAAAATTGTATCATGGAATTCAACTTGCGATATGAGAAAGAATTGTCGTAAGCATTTCCACATGTTCTGACGTTCTAGTTAAAACACTCTACTTTAGTGCCACATAACAAGGCCAAATCTGATTTGCCATTTTAGTTTCCTTCATTTAGTGTGCACCTGGTGGTGCACTCTAGTGACGGACTGGTGTCATTGCAAGGTCTCATGCTCACCTTTTTGTATTTCTGATCACATTTGCTCCATTACAATCTTGAAATTGCTCATTTACTAAAACTCCCAACACCACTTCTAAACTTTTGCAAAACTGGGCAGCAAGAGATATCTGATAGGATTTCGGCAATCGGATAGGATTAAATTAATAGAAGGGGTATCCACATTCAAGTCAACGATACAATTTATATACATTTAATTCGATCCGATAACTTGGAGGAACTGGGGACAGTCCCTCTATCAGGTTTATCCATCTTTTCAAAGGGTGATTGGTCAAACAACCCTCACCCAAAAGGTCACGAATTTCAAAGTTCTACTTTCCCCATGtcttaagtgtttttttttttgtgtgtgtgttttttccacCAATTACTTGTAGAGTAAGTTCTAATGTAGGAGGGTAACTCCTCAGTGTTCATTTTCCCCTGTTGTATGCTGAGTGTGCTCCAAAGGCTGTTCAGAATGATTTCGCGGATTGGTTGAAAACTGCTGGCGGACAGGCAGCAACACTTTTGTTTTTTACACCACCCGGGTTTTCATTGACAATAAACGTTGACCGTGACATCTA

Function

GO:

id name namespace
GO:0009165 nucleotide biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0004749 ribose phosphate diphosphokinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00948 PRPS, prsA; ribose-phosphate pyrophosphokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU663143 lncRNA downstream 1308 18244368 ~ 18299083 (-) False LOC100170202
TU663142 lncRNA downstream 1308 18296659 ~ 18299083 (-) True LOC100170202
TU663163 lncRNA downstream 103078 18196968 ~ 18197313 (-) True LOC110528804
TU663162 lncRNA downstream 105087 18195142 ~ 18195304 (-) False LOC110528804
TU663125 lncRNA downstream 177894 18121847 ~ 18122497 (-) True G581136
TU663261 lncRNA upstream 72718 18384712 ~ 18395937 (-) True LOC110527435
TU663265 lncRNA upstream 75301 18387295 ~ 18388151 (-) True G581257
TU663266 lncRNA upstream 77922 18389916 ~ 18391076 (-) True G581258
TU663303 lncRNA upstream 141394 18453388 ~ 18453682 (-) True G581291
TU663305 lncRNA upstream 143047 18455041 ~ 18455333 (-) True G581293
NM_001129982.1 mRNA downstream 2327 18297518 ~ 18298064 (-) False LOC100170202
XM_021608698.2 mRNA downstream 44130 18245987 ~ 18256261 (-) True LOC110527433
XM_021608697.2 mRNA downstream 46381 18252237 ~ 18254010 (-) True LOC110527432
XM_036982856.1 mRNA downstream 100810 18194024 ~ 18199581 (-) False LOC110528804
XM_021608691.2 mRNA downstream 106909 18178455 ~ 18193482 (-) True LOC110527429
XM_036982858.1 mRNA upstream 3422 18315416 ~ 18383323 (-) True LOC110528806
XM_021608702.2 mRNA upstream 72677 18384671 ~ 18401794 (-) False LOC110527435
XM_021608700.2 mRNA upstream 72677 18384671 ~ 18401796 (-) False LOC110527435
XM_021608701.2 mRNA upstream 72677 18384671 ~ 18401796 (-) False LOC110527435
XM_036982859.1 mRNA upstream 79095 18391089 ~ 18401795 (-) False LOC110527435
TU663175 other downstream 65353 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 257011 18042927 ~ 18043380 (-) True G581089
TU662381 other downstream 899855 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 1499705 16797782 ~ 16800686 (-) True LOC110527396
TU661516 other downstream 1499769 16797782 ~ 16800622 (-) False LOC110527396
TU665792 other upstream 1903655 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 2460873 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 2526494 20838488 ~ 20839336 (-) False LOC110527470
TU667558 other upstream 3109460 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 3205401 21517395 ~ 21518873 (-) True LOC110527499

Expression Profile