RNA id: XM_036982858.1


Basic Information

Item Value
RNA id XM_036982858.1
length 6896
RNA type mRNA
GC content 0.57
exon number 16
gene id LOC110528806
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18315416 ~ 18383323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTAGCAACGCCCTCACCTCACACAACTCCTCACCTCTTTCTTTAGTTTCATCTCTCCTTTCttactctcatccctccatctcaccatcaTTCTCCAGCGTGGCCATCGGGGCATCATGAAGGGTGGTGATGGAGCGCAGGCCGGAGAGAATAGAGAATATGGACACTAACCCCAGTGTTGACGTGTCAGCGATGGATGTGGGGTGGCAGGAGACAGCTATTACCCAGCAGCCTGCAGACCACAAGACCAAATCATCGGGCTGGCCTCCCCCCTCTGGATCCTGGGGCTCCCTGCCGGGACCCCCCTATGGCTGGGACATGGGCTCTTACAGGGACGGCCGAGACTACTTCAGCAACCACGTGTCCCAGAGCAGCTCCCTGGAGGAGGTGCACCGTCTGGATGGGGTGCAGCTGGTGCCCCCTGACCCCCGGCTGGTGGAGATGAGACGGGACCCTGTCCTGGGGTTTGGCTTCGTGGCCGGGAGTGAGAAACCGGTGGTGGTACGCTCTGTTACGCCTGgagGTCCCTCGGAGGGAAAGCTGATCCCAGGAGATGAGATCATCATGATCAACGACGAGGCAGTCAGCTCAGTGCCCAGGGAACGAGTCATCGACCTCGTCAgAAACTGTAAGGAGTCCATTATGTTGACTGTTGTCCAGCCGTACCCTTCGCCCAAATCAGCGTTCATCAGTGCAGCCAAAAAAGCCAGGCTCAAGTCCAATCCGGTCAAAGTGCGCTTCGCAGAAGAGGTCATCATTAACGGTCAGGTTCCGAACACAGTGAAGGACAACTCTCTCCTCTTCATGCAGAACGTTCTGAAGGTGTACCTGGAGAACGGGCAGACCAAGTCGTTCCGGTTCGACTGCAGCACATCCATCAAGGATGTTATCATGACCTTACAAGAGAAGCTGTCCATCAAGTGCATTGAGCACTTCTCCCTGATGCTGGAACAGCGGACGGAGGGATCGGGCAGCAGGCTGCTACTGTTGCATGAACAGGAGATGCTAACTCAGGTGACACAGAGGCCGGGGTCTGATAAGATGAAATGTTTCTTCAGAATCAGCTTCGTCCCCAAGGACCCGGTGGATCTGCTCAGACGGGATGCCGTGGCATTTGAATACCTCTATGTTCAGAGCTGTAACGATGTGGTTCTGGAGCGCTTCGGCTCGGAGCTGAAGTACGACGCCGCGCTCCGATTGGCCGCTCTGCAGATGTACGTCCTCACTATGACGACCAGGCAGACGCAGAAGGTCTCGCTCAAATACATCCAGAAGGAGTGGGGTCTGGCCCTTTTCATCCCACCAGCGGTGATGACCAGcatgaaggagaagaacatcaagAAAGCACTGACGCACATCCTCAAAACCAATCAGAACCTAGTGCCTCCGGGAAAAAAGTTGACTGCGTTGCAGGCAAAGGTGCACTACTTGAAGTATCTCAGTGAGCTGAGGTTGTATGGAGGGAGAGTGTTCAAATCCATACTTTTGCAAGGGGAGAAGCAGACAGAGGTGACCTTGCTAGTGGGGCCCAGGTACGGCATCAGTCACGTGATCAACACCAAGACCAACCTGATGGCCCTGCTGGCAGACTTCAGCCACGTGAACCGCATCGAGATCCTCACAGAGGATGATATCAACGTCCGCGTGGAGCTACACGTCATGGATGTCAGGCCCATCACATTGATAATGGAGTCCAGTGATGCCATGAACCTGGCGTGTCTGACAGCAGGGTACTATCGACTCCTAGTGGACTCTAGGAGATCTATCTTCAACATGGCCCACTGCAACAGCATTGCTGAAGAAATGGATCAGGACAATCTTCTGGAGTGGCCGTACAGCACTTCGTTAGGCAACTGTGAGGACCCCAATGCTGCCGGCCAGGATGAGCATTACAGCAGTGACATGGACTTCTCTaacaatggagggagagagaacaacatCTCTCCCCACGTTCCCGAACCCCAAAACCATACCCTAACCCTGCAGCAGAACGAGAGGCCATCGGAGGGGCGGAGGAGTCCCCAGCCCCCACCTCTCCCCCCCGCCAGAAACAAACCCAAAGACTCCCCCCGGAGCGCCAAGGTCTCCTTCATCTTCGGAGACCCCCCTTTGAACACTGTGAACCCCCAGAACTTAGGCTACGAGTGCCTGATGGATGAGAGTCCCGAGGTGCCCGAGAACAGGCCCATAGCCTACTTGCACAACAACGTCAACAACACGGGGGACTTCAGGACCCAGGTGACCGTGCCCTATCAGTTCGCCGACGGCAGTCCGCATGTGGTCTACAGCAACATCGGCGAGGAGCTGGTGGAGGAACCGCTGCTCAGGGACCTTTGTTATGCAGACACCACGGACGACGCCGAGGATGAGGACGACGCCAGCTGTGAGGAAGACTCtactggggggggagggggggaggatggCGGCAGAGGTGGAGAGGGCGGCTCGACGGTGGCAAGCAAAGCCACGTTCCTCACCCTCTCAGGCTCCAGCGATGACATCATCGACCTGACCTCACTTCCTCCACCCGAGGGGGGCGATGACGAAGATGATGATACTGACGGCGTCCTCCATTCCCTAAATCTCGCCATTGCAGCCCCGCCCCCGGGGTTCAGAGACAGTTCTGATGAGGAAAGCCCCGAGGGTCGCCCTTTGGCCACTGCTGACAACGATGACATGCCCGTGTCGCTGATCGACGCTGTCCCCACGGGGTCGCGTGTCGAGGGGAGCGGCGGGGAAAGGAGGCTGGAGGATGCCATGGTGACAACCCTGCAGGCACTGGAAGCCCTGACAGTGTCCGAGGAGAGGCCACGCCCACCACGCCCACAGCGACCACAGCCCAACAGTAACCCAGGTGTGCATATGTCTCGGGCTTTCAGTCCTGAGTCTTCCTCTGACTCAGGCAACGAGACCAACTCCTCAGAGATGACCGAGACCATGGAGCAGGCCGCCGCCCACAAACTCATCCACGAGAACCACAGGCGCCTCCTTATCGCCACCTCCGAGGGCTACCAGCCTCTGACGGAGGAAAAGACAGACTTCCCTGTCTCACCCAGAGTGGCCACCCAAAAGAAAGCCCACAGCCCCTCCCACCATCGAGACAGCGGGCCGCCGTCGTCCACCGCACTCCCTAAACAGACCCTCCATCCAGATGGCATAGAGCTGGATCCAGAAACCACTGATTCTCTGACTAACCTCTCCTCCGGCTTCAGCAAGCGACCCAACTCTGTGGTTGTTGGAGGGAAACGGCTAAAAAAGTTGGCCGACACCAACGGGAAGTTCAACACGTTCAGTACCAGAGACGGCCACAGGGGGAGCCAGCTGGATGTGGAGCGTACCTCGTTCTGTGAGAGGTTGCAGAGAAGGCCGCCTCTTCCTCTACCAGAGAATTCCATCTCCATCATGGCAGAGAACCTGCCGGTGAACAGCCTGCCGAGGAGTCACCGCAGGCTGCCgtgcccccctcccccacaccctGAACGGACAGAGCCTGTGGAGGAACTTGGGGAGGCTGCAGGGGGGGACACTGGGGCGATGGGCGGCCAGGAGGAAGAGTACCTGGGGGGAGCGGCAggtcccttcccctcctcccctaccAAGAAGCCCCGGGACCCCCCCGGTGGACAGGGAGATGCCCCAGGGGAGCAGCTGCAGCAAGTCAGGCAAGGAGTTGCCCGGCTGTGTGAGTACCACCTAGCCAAACGGATCTCGTCCCTCCAGAGCGAGGCCCACAACTCCCTGCAGGGCTCCCAGTGCTCATCACTGGACGCGGGCTGCAGCACGGGGAGCAGCGCCTGTGGCACCCCAACGGATTCGCCCCTCTGTGCCCCTGACGGCAACCACCATCCACTCTCTGAATCTTCCACATCCCTCAGGGTTTTCACCTATGAGGACAAGGCTCCCCATGGCACCCCGGGCCAGATCCCTGGGGGCAGAGACCTCCACCCCCAAGCAGACCCCACACTCCTGCGGAAGATGCTGCCCAACATACACCCTCCTGGGTCAGACACCAGCAGAGAGGGTTCCATCCGGTCGGCCAAGATGAAAGAAACCACAGGTAGTACAGCTAGAAGGAGTAACCTTCAAAATGATCTGCATGCCAAGACAGCCTGTGTAAGGGGTGCTAACTCCAAGGAGGGGAATGAGTCCTATAGGCAGCTCATTAACTACCTGACAGTGAGCCAGATGCATCAGGGAGGCAGGTTGCACAGTGCAGGCCTGGGAGGGGGAGTCAGAAAGGACACTAGGAGATATATTACCAGTAATCCCCAACTGATAGAGATGGTTAGGAGTAAAGGGAACACCATTCACCGCTATCCCTGCATGCCCTCCTCGTCCTTCCTCAGCCCGAGTCTAGTGAACCCCAATGCAGCCACCTCACGGGGTGACAAAGGCTCCCGACCATATCACTCCGCCACGCTGCCCACTAAGTTGAAGAGCAATCCTGACTTGCATGCTCAGAGACCTGCTGACAGTCTTGAAGTAAGGCCCAGTGGCACAGAGAGGAGGAGCTCCTTTTCAGGCCTTGAGAGTGAGTTAGAGAGGGGCGCCATCGACCCTGAGGTCGAGCGGTTCCTGTCTCTGAGGGACAGCATCCATGGAGGGGGTGGGGGCAGGCCCCCCTCCAGAGCGCGGAGTGTGATGTCCCAAAGCGGTGCCAGCATCTGTGGCCCAGAGGACTGGCTCAGATCTGACTGCAGGACAAAGCATGCCGTCCGACAGGCTCTTAAcgattctctctgtttctctactgCCCCTAGTGTAGCTCGCACAGAGCAGCTGGGGACGTCACTGGGAGCGGAAGCAGGAGATCACCCATCAGCTTTCACTAAGCAGGCCCGAGCCTGTGCCacggctcctcctcctcctccaccacctcctccacctcccctacCAGCCAACATGAGAACCCACAACTCCACTGTGCCAAAGCAGGAGTCCACCGTCACATACAGACAAAACCACATCCAGTCAGTCACAGCCAGCCTCCACCACCAGTGCGAGCCCAATATGAACAGCCTCCAGCGGGGCAGGGACCCCAGTGTGAACAGCCTCCACCTGGGCAGGGAGCCCAGCACCAACAGCCTCCACCTGGGCAGGGAGCCCAGCACCAACAGCCTCCACCTGGGCAGGGAGCCCAGCACCAACAGCCTCCACCTGGGCAGGGAGCCCAGCACCAACAGCCTCCACCTGGGCAGGGAGCCCAGCACCAACAGCCTGCAGCGGGGCAGGGAGCTCAGGCGGAGCACCAGTAATGTAACTGCGGGCTGCGGGAGTGTGGAGGTGCTCTTCGACAAAGGCAGAACTAAGTGCCAGCAGCAACAAAGACCAGTTGACCCCAAACTACAGAGGAGACCGACGAGGAAGAGGCTGTCGAAGAGCTACTCGCAGGGCTCGGTAGCGTCCACCTGCTGGTCGGCTGGGGGCAGAGACAGCCGGAGGGCCTCAGTGATGTTCCCCCTGCAGAAGGACACCAAGCACATGAAGGGCTCGCAGAAGCTGGACTCGGGCAGCCCTTGGAGGTGCCATGGTCCCTTCAGCTACTGCTTCTTCAAGAGGAAGAGCCAGGCGGATGAGGATGAGGTAGAGGGAGACGAGAGGGACGAGAGGGGCGAGAGGTCCAGGCGCAGCCGTGGCGGGGAAATGGAAGAAGCAGCGTCTAGCTACGGCCCGGCCATGGACGCAGCAGGCGACCAGCTCTACAGCGAGGTCCTGACCAACATGAGCTTCAGCGACCGGCTGTCGCGCATCAACACGCTCAAAGACCGCATGTATGTCTTCCCCGTTGGCTTCTCGGATGTACACCGCGACGCCAGCGAGCTCATCGCTCTAGTGCGCTCAAGCGTAGGCAGGGGGGACCGCAGCGGGCAGGTGCCACAGATCACAGCAGACCTGTCCCAATACAAACAGCTGCTGTCCATCGAGTCTAAAGAGCTGGGGCGGGCATGTCGCAGGATGGCCCAGGCCCACGGCAGCCCAGAGGAGATGCTGCTGGCCATCACCTGCAGTTTCCAGGTGCTGTGCTGCCTGTCTGAGGCCTGCATGTGCCTGGTGAGGGGCCTGGGGGCATCAGCCGCCCAACAGCAGAGGGAGGTGGTGGGCAAGGTGGACGAGCTGGTCATGAACTACATCTGCCTGTTGCGCGCAGCCGAGGTGGCGTCCATCGGAGCGCCCAGCGACCACAGCGTCAATGCCCTGGTCCGCCACTCCAGCACCATGTCAGCCATCGCCAACGCACTCACCCGCTCCCTCAAAACGCTGCTTAGCAAGTAGTAGGACGGCCAGCCGGCGGCACCATCTTTTAGTGTTATGTACATTATACAAAGCCATACAAGTCCAGAACTTTGTAATAAGAACTGATGTTATTATAGACACCCTTCTTCCTGTGTACATTTTTTTTCCATGTATataatgtacatacagtacatatgatACACTATATGAATATATAAATTACTAAAGATATTTTGAGTGGTCATTGGGAAGACATGTACTCTTTAATGTGATATTGACGATGCAGTTATAGGTTGCAATGTGGAGAGGATTGATGTACCGTAGCACTGAAATTGCACTGCATTTAACACTCCTTAGTGTAATTTCTAAATtattttgacatgtttttttttaaatacagaggGCAAAAACATATAATGAAAAGACATAAAATATGTAAGCAACTATCTTATTAAAGCGCTTTTAAGTCAGTGTGTAATGTttaataatttttaaaaagtTATTTCATTGTATTTGTTTTAATATGATCCTCTCTGGACTCAATGGTGTCCTTCAACAgctatagttgaagtcggaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccactccacaatatttcttgttaacgaactatagttttggc

Function

GO: NA

KEGG:

id description
K23956 FRMPD4; FERM and PDZ domain-containing protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU663143 lncRNA downstream 16333 18244368 ~ 18299083 (-) False LOC100170202
TU663142 lncRNA downstream 16333 18296659 ~ 18299083 (-) True LOC100170202
TU663163 lncRNA downstream 118103 18196968 ~ 18197313 (-) True LOC110528804
TU663162 lncRNA downstream 120112 18195142 ~ 18195304 (-) False LOC110528804
TU663125 lncRNA downstream 192919 18121847 ~ 18122497 (-) True G581136
TU663261 lncRNA upstream 1389 18384712 ~ 18395937 (-) True LOC110527435
TU663265 lncRNA upstream 3972 18387295 ~ 18388151 (-) True G581257
TU663266 lncRNA upstream 6593 18389916 ~ 18391076 (-) True G581258
TU663303 lncRNA upstream 70065 18453388 ~ 18453682 (-) True G581291
TU663305 lncRNA upstream 71718 18455041 ~ 18455333 (-) True G581293
XM_021608699.2 mRNA downstream 3422 18300391 ~ 18311994 (-) True LOC110527434
NM_001129982.1 mRNA downstream 17352 18297518 ~ 18298064 (-) False LOC100170202
XM_021608698.2 mRNA downstream 59155 18245987 ~ 18256261 (-) True LOC110527433
XM_021608697.2 mRNA downstream 61406 18252237 ~ 18254010 (-) True LOC110527432
XM_036982856.1 mRNA downstream 115835 18194024 ~ 18199581 (-) False LOC110528804
XM_021608702.2 mRNA upstream 1348 18384671 ~ 18401794 (-) False LOC110527435
XM_021608700.2 mRNA upstream 1348 18384671 ~ 18401796 (-) False LOC110527435
XM_021608701.2 mRNA upstream 1348 18384671 ~ 18401796 (-) False LOC110527435
XM_036982859.1 mRNA upstream 7766 18391089 ~ 18401795 (-) False LOC110527435
XM_021608710.2 mRNA upstream 679506 19062829 ~ 19067466 (-) False LOC110527440
TU663175 other downstream 80378 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 272036 18042927 ~ 18043380 (-) True G581089
TU662381 other downstream 914880 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 1514730 16797782 ~ 16800686 (-) True LOC110527396
TU661516 other downstream 1514794 16797782 ~ 16800622 (-) False LOC110527396
TU665792 other upstream 1832326 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 2389544 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 2455165 20838488 ~ 20839336 (-) False LOC110527470
TU667558 other upstream 3038131 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 3134072 21517395 ~ 21518873 (-) True LOC110527499

Expression Profile