RNA id: XM_036982861.1


Basic Information

Item Value
RNA id XM_036982861.1
length 4862
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110527437
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 18404754 ~ 18495689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTCTCATCCTGCGGTCCGCTCTGACTACAGTTTGGGAACGAGCTGAGCTGCATGCATAATAACACGGCACAGAGAATTGGATTCAGTtgcgcgctctctgtctctcgctttaTCTGAACCAAGGCATTCTAACGATGACAGCATAAAAACACGTGGACCAAGGGTTCACTGTAGGAGTGTATTGATGGGACCTATCTCGTGGTTTGTTTCTTTACGGCGCTTAAACTAAACTTCTGAGAGAAGGTTGTTTTTTTCAAACGCTGCTGCGTTTGTGCAGAGGGGAGATAGAGATGTCATCTGGTCAAGGACTACTGAACGTCTTCTCCTGCTCAACTCCAGCCTCAAAAGCCATCTCTAAAAGGAAGTTGCGACAAACTCGGAGCCTGGACCCTGATATTATAAGGAAATGTGGCACAGAGACAGATGGAACCCATGGGGACCGCTTGGGGTCACCTGGTTTGCGCGTTGAGGAGGCAGGTGCGTTTTCATCCTCGCCAAGCTCCCTTGAGCACCCGGTTGCGTTGAAATCAGATGCCCGGTCCAGAAATCTTAGGGTGAAACAACCCCTTTCGTCTTTATCTGGTCCCTCCACACCCTTGGACCTCTCCCCGACATCAAACTTTCCCTTTAACTATGACGTGACTGTGAGGGGCACAAAGCGGAATACCGCGTGGGATTTACCGTTTCTGGTGAGGAGCCCCAGCGTCACTCCAACTGGGAGCACGAACACATTATTCTCACCGCGGAGATGGCTTCAGAAGAAGCAGCAACAGTCCAGTTCTCACGCCTATATCGTTTGGAAGTCGGAGGGTGACTTCACCTGGAACAGCCTGTCAGGGCGGAGTGTACGGCTGACGCCGACGGCCATCCAGAGCCTGTCGGAGCTGGAACGGACCTGGCTACAGGAGGTAGCCTTCAACAGGCTCCATCAAGACTATGACCTGGGCTGTCAGATCACCATCCCCAAAGaTGGACAGAAAAGGAAGAAGTCACTGAGGAGGAAGTTGGACTCTTTGGCGAAAGAGAAAAACAAAGATAAAGAATGCATACCCCAGGCCTTCGGTATGGCCCTGTCCCAGGTGATCGCCAACGACCGGACCCAGAGGCAGCGCCAGGATAGCCTGCGTCAGGACCCTCCTCACAGGGAGGAGCATAAGGACCCGTCGGACCTGGTGTCGTCCATCTTGCAGTTTGCCACCAAGAGGTCCACCAATAAGGAGCTGTCCAGCAGTAACTCCTCCCTCAGCTCCACCTCGGAGACAGCTAATGAGTCCACGTCGCCCAATACGCCCGAGGCTGCCCCGCGGGCACGCAGGAGGGGGGGCATGTCGGTGGACTCCATCACAGACCTGGATGATAACCAATCCCGCCTGTTGGAGGCGCTGCAGCTGTCTCTGCCCGCTGAAGCACCCAGCAAGAAGGAGAAGCACCGGGACAAGAGGCTGAGCCTCAACCCTATCTACAGACAGGTGCCTCGCCTGGTGGACAGCTGCTGCCAGCACCTGGAGAAGTATGGTCTTCAGACGGTGGGGATATTCCGAGTGGGAAGCTCCAAGAAGAGAGTGAGGCAGCTGAGGGAGGAGTTTGACCGGGGAGTGGACGTCCAGTTGGATGAGGAGCACAGTGTCCACGACGTGGCCGCGCTGCTCAAGGAGTTCCTCAGAGATATGCCTGACCCTCTCCTCACCAAGGAGCTCTACACTGCCTTCATAAACACCATGTTGCTGGACTGTAAGGAGCAGCGGAGTGCCACCCAGCTCCTGGTTTACCTGCTGCCAGCCTGTAACAGCGACACCCTGCACCGCCTCCTGCAGTTCCTCTCTACCGTGGCGAACCACGCCCACGACAGCCATGACAAAGACGGACAGGAGGTGACGGGGAACAAGATGACCTCTCTGAACCTGGCCACCATCTTTGGTCCCAACCTGCTCCACAAGCAGAAGAGTTCAGACAAGGAGTTCAGTGTGCAGAGTCCGGCCCGCGCAGAGGAGAGCACCGCTGTTATCGCTGTTCTCCAAAGGATGATCGCAACCTTCCACTCCCtcttcatgGTGCCCCCGGACCTGCAGAATGAGGTCCTAATGAGTTTACTAGAGACTGATCCTGATGTGGTAGACTATCTGCTCAGGAGAAAGGCATCACAGAGTCCAGACGTGTTGCGATCAGAGGATCCTTTCTCCCTGAGCGAGAGGCGCTCCTCCAGTGACTCCAACAAGGTCTCCAGTGGAGAGCTGTCCCCCTATGACAACAACTCCCCCATTCTGTCTGAGCACCAGGGGGAAGGGACCAGCCCAGGGTCAGAACAATACACCCTGGTGAGGCAGGTGGCAGGACGGACACGGGACACCCATGGGTCCAATCCTTGGGTCTCAAAAGAGGAGCATGCTAATATCTGGGGAGCTTGGCATTCCACTCTGAAACCAGGGCTGATGGACCAGTCTTATGCAGGTTCCCATAGCAACATGTCAGAGGGCAGCTCACGCAGCTCCCAGGAAGGACTTGACTGTCTCCAAGGCGATGCCAGGCAGGTGGTACGACGGACACAGACCTCACTGGGCGTGGCCGAATGCAGGCCCCATCCCCCTGTCACACGGGTCTGTAGCAGCCCTCACAGCAAGGCGGGACGGCCGCGCCTCCTGCTGAGCCTCAACCCTGTGACCCCACCCCTACCGTACCCCAACAGCCAATCAGCAGCCAGCAGCGCAGAGAACCTCCCCCAGGGCATTAGACACCAGGCTAACCCCAGCCCTAACTCCGCCCACTCGggtcctccccctcccccttacgGCGGCTTGTCCTCCAGGCTCTCCCCCGCTGCCTCTAAACCAGCCCagcctgtctccccctccctcgcaGCACCCCCTCACCAGCACCCCCTGCAGGGTGGGAGGCCAATGGTGCCACTGAACTCAGCCTCCCCCACCACGGACAGCATGGTACCCATGAGCCAAGAGTGGCAGGACTGGCAGAGGGACAGATGGCAGATCTGGCAACTCCTGTCCTCGGAAAACGCAGACACACTCCCAGAGACACTGGTGTAAGCTGGACCATAGGACCGTGGGATAGTGTtagccatccctccctccatccctcccctctgtcctcccctccgTCCTTCCCCCCAAACATGGGCGCCATGGCGTTGTTTACATGTGCAGCTGCTGCCTATACTACGGACTTGGTACAAAGTCACTAGTGTTTCCTGTTTGCTATGTATTGATCCGCGATTGATGTTGTATCCTGGTCATCCCTTTGCATGTTATTAAATATTCTCTCTGAGCTGTTTCAGAGAGGATCAACATGAAACTGTCAGCAAAACATACCTCAAACGTCAAGTTTATCAATTTGATTCACAATTGCATGTCCACTTTTCGATAAGGCCCCAGTTTAAATTGAACTGAATGTAATATGTACAGGTGACTTTTGAAGACAGGAAGGTTTAACGTTTATGACAACAATTTGATAAGCTACAGTCAATTTACATGACCAATCCTACCCTTATATATTTACTGAAGTCGTCACCTATATTAGTGATCGCTGCTAATATTCAGAGGGTATTTACTTGCTGATTATATCCCGATAAGTACCGCACACGTTTGTATGAGCAGAGTTTTATTCAATGTCAGTCACCAAGTAACAGAGCCCATAGTACAGTTTTGCAACAGTTTGTATATAAGCATTATAATGTATTTTATGTCGGGCCTagctaacatttttttttttacaggctgTCTAAATGTTTGTGTCGTGTGGTTTTAACTCGGTTTAAAAAGATAACGTCTGTCAAAGCTTTACTAAGTTGGGTTCTAAAAGAACAGAACTGTGTTAAAGTTCTTTAATTCCTTGACTCTCTTTTCATCACATGTTATTCTGGGCGTCTATAAAGTCTCATCTGCTTTCTCTCTTTCCGTAGTTGACATTGTTCTTTTAGCTATTGGAATTCACTTCACCATGGTTGCCACAGCATGGCTTATCTTACAAGCTCATATCAACATAATTCATTCCAATGATTCTCTCATTCCATTAGGTGGTTGATGTCAAGGTTATGGCTGCATAGGAATATTAAAAAGACAAGTTCATTGCTGGCCTGACAGATTCATTgctttctctctcactgtattTGTCCGATTGATATGGGATTTTACGAGATATTTGCACTTACAGTACTCTACTGGACTCTGGGAATTGCCAAAGCTTTTTTGATTCCTCCTTTTCAGCAACAAAACAAACACGTCTCTTGCTTTTGTCATTACATGCACTGTCTGCctctattttttttgtaaatgtaaaaatggttaaagaaaatgtTTGAGCccttattcaactaggcaagtcagataagaacgaagtgttatttacaatgacggcctaccccggccgaacccagacaatgctgggccaattgtgcgccgccctatgtgaTACAGCTCTTGATACTCTATAATTTACCTGATGCTTTTTGCGCCCAAATACACCAGTAGTCTACAATCATTTCCTAGTTTTGTGGATATTTGCTGGCAAATACTGCACACTTTCTAAATGGTAGTTTGTTTGTTGGTTCATTTCAATCCGTCTGCATGTCGAGAGGAATTTGAAGTGTGAGAGACATTTGAATTATTTACAAGGATTTTCACATTTCTACATATCTTCACAGTGTCCCTAAAATGACATGTCGAATACGCGTCCCATCTTCACTTCTATAAAAAACGCTTTCAACAGCTTGTGTTGCTATGCACTATTCTCAATGCCTGTGTGTTTGGAGTCAAGTATGCCATGGATCCATGCTCTTTGAAAAGGATTACAACTATTATGTCCGTTCAGTATTGTAATATGTGGAAATAACtgattttacccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU662966 lncRNA upstream 2977 18400131 ~ 18401778 (+) False G580995
TU662965 lncRNA upstream 2977 18400705 ~ 18401778 (+) True G580995
TU662963 lncRNA upstream 4760 18398972 ~ 18399995 (+) True G580994
TU662949 lncRNA upstream 18390 18384709 ~ 18386365 (+) True G580988
TU662709 lncRNA upstream 105696 18296659 ~ 18299059 (+) True G580784
TU663336 lncRNA downstream 14229 18509918 ~ 18510234 (+) True G581319
TU663518 lncRNA downstream 146652 18642341 ~ 18642583 (+) True G581493
TU663523 lncRNA downstream 149958 18645647 ~ 18645847 (+) True G581498
TU663528 lncRNA downstream 154189 18649878 ~ 18650294 (+) True G581503
TU663539 lncRNA downstream 162722 18658411 ~ 18658738 (+) True G581514
XM_021608696.2 mRNA upstream 162592 18205301 ~ 18242163 (+) False LOC110527431
XM_021608694.2 mRNA upstream 162592 18217131 ~ 18242163 (+) True LOC110527431
XM_021608695.2 mRNA upstream 165811 18217128 ~ 18238944 (+) False LOC110527431
XM_021608692.2 mRNA upstream 199922 18202651 ~ 18204833 (+) True LOC110527430
XM_036982855.1 mRNA upstream 280440 18111715 ~ 18124315 (+) False LOC110528803
XM_021608707.2 mRNA downstream 27914 18523603 ~ 18581511 (+) False LOC110527438
XM_021608705.2 mRNA downstream 43570 18539259 ~ 18581511 (+) True LOC110527438
XM_021608711.2 mRNA downstream 687694 19183383 ~ 19192955 (+) True LOC110527442
XM_021608712.2 mRNA downstream 929676 19425365 ~ 19430875 (+) True LOC110527443
XM_021608713.2 mRNA downstream 1287156 19782845 ~ 19788004 (+) True LOC110527444
TU662252 other upstream 587907 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 724087 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 1004222 17398793 ~ 17400533 (+) True G580179
TU661990 other upstream 1070626 17333724 ~ 17334129 (+) True si:ch211-181l5.2
TU661420 other upstream 1307215 17094595 ~ 17097540 (+) True LOC110527403
TU664011 other downstream 480989 18976678 ~ 18976999 (+) True G581976
TU665478 other downstream 1522166 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 1743222 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 2585139 21080828 ~ 21082615 (+) True G584643
TU667948 other downstream 3457340 21953029 ~ 21953269 (+) True G585573

Expression Profile