RNA id: XM_021608710.2


Basic Information

Item Value
RNA id XM_021608710.2
length 3888
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110527440
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19062829 ~ 19068838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATTGTGCATGACATTCAGCAATGCTTGCAAATCCGTTTTTGCTTTTAATCAACTTGGGTCTCTTTTTTTCGCCCGAGGGATGAAGGGCTGTGACTGTCCCTATGTAACAATCAGTATTTCTAACGCATGCAGGCTTGAGGATGAACACCTTCCATAATGACCACGACTAGCCTATTTATCATTTATTAACAAAATATCTCCGGATATCTGATGATAATGATTGATACCCGGCGGTTTCTATACTATTCGCAAATTGTCGGGATCTGCAGGATGACACCCCATACCGGCACCATACTTCAGTGAGCTGGGGCACCTTCTCCCTCGAAAATGCATATCTGGATACTGAAAATAATCCTTCTGATCGCAGCATCTCTGAGTCTGGTCGAGATGTACGACAATTACGGGGAGATCTGTAGGAATCTATGTACATGCGAAGAGAAGGAAGGGATACTGACGGTAAGCTGTGAGAATAGAGGGATCATCCGACTGACAGAAATAAGCCCGGTGCATTTTTCAATGTACCACCTTCTGCTGACAGGGAACCTCTTAAAGAAACTGTCCCTCAACGACTTCATCAACTACACTGGGGCGACCATATTGCATTTAGGCAACAATGCTATCGATGAAGTGGAAACGGGTGCTTTCAACGGACTCCAGGGATTAAAGAGATTGCACTTGAACAACAACAAGATAGACGTCCTAAGGGATGATACGTTTGTCGGCCTGGAGAGTTTGGAATACCTTCAGATTGATTACAATTACATCACCAATATAGAGCCTAATGCCCTGAGTAAACTGCATCAGCTCACAGTTCTCATTTTGAATGACAATTTGCTCTCTGCTCTGCCTACAAACATTTTCCGGAATGTTCCCTTGACACATCTGGACCTCAGGGGCAACCGGTTGAAAATGTTTCCTTACATTGGGCTCCTGGAGCACATGGACAAAGTGGTGGAATTACAACTTGAGGAGAACCCGTGGAATTGCTCGTGTGAGCTCATTGCCCTGAAAGCTTGGCTGGAGAGCATATCGTACACAGCTTTGGTGGGGGAGGTGGTCTGTGAGACACCGTTCAGACTGCATGGCAGAGACCTGGACGAGGTCTCCAAACAGGAGCTGTGCCCCCGACGAGCAATTTCTGAATATGAAATGCGACCCCCTCCCCCACTCAGCACCAATGGATATTTCCAAACCACGCCAGCTTCGGTGACGGCCTCAGCCACCTCGTCAAATGCTTTCAAGGCATCGTCAAGGCCTACCAAGGGCACCCGTCAATCAAACCGAACCAGGTCAAAGCCCACCTCCCGGATTCCAGCTAACCCTTACAACTATGGCCCCATCATTGCTTATCAGACCAAATCTCCTGTGCCTTTGGACTGTCCCACCACCTGTACATGTAATCTGCAGATTGCTGATCTTGGACTAAACGTCAACTGCCaagagagaaagattgagaaCATATCTGACCTGAAGCCCAAGCCATACAATCCCAAAAAAATGTATCTCACAGGGAATTACATTCCTGTGGTACGCAGATCTGATTTCTTGGAGGCTACCGGATTGGATTTGCTTCACCTAGGAAACAATAGGATATCCCTCATCCAAGACAGAGCTTTTGGGGATTTAACCAACCTGCGTAGGCTGTATTTAAATGGTAATCTAATCGACAGGCTTACAGCAGAGATGTTTTTTGGCCTGCAGAGTTTGCAGTATCTCTACTTAGAATACAACAAAATCCGTGAGATTGTAGGGGGCACGTTCCGGTTTGTGCCAAACCTTCAGCTGCTTTTCCTCAACAATAACCTTCTGAAAACCTTACCAGCGGGAATCTTTACTGGGCTGTCCCTCTCTAGACTTAATCTCCGCAGTAACCACTTCCAAAACCTGCCTGTGAGCGGTGTGTTAGATCAGTTAAAATTGCTGTTGCAGATAGATCTGATTGAGAACCCATGGGATTGCTCGTGTGACGTCGTCGGCATGAAGATATGGCTCGAGCAGCTCAGTGCCGGCACCGTTGTTAATGAGGTTAAATGTGAGACACCCAAACGTCACAGCGGGATTGATATGCGTTCCATTCAGTCTGAACAGCTGTGTCCAGATTACTCTGACGTAGTCGTCTCAACAGCGCCCCCCTCTGATGAGCCTCTGCCGGACAGAGCCACCACCACAGAGACCTACCAGAGATCTAACCCCACTAGCAGCgtcgtccctctctctgtcctcatcctCAGCCTGCTGCTCGTGTTCATCATGTCCGTCTTTGTGGCGGCGGGGCTGTTTGTTGTCGTGGTGAAAAAGCGTAAAAAGTCCCAGAGCGACCGCACCAGCACCAACAACTCTGACGTGAGCTCGTTTAACTTGCAGTACAGCCTTTACAGTAATAACCGAACCGTCCCCAAAGTCAAAGCCCCCGCCGGACACGTGTATGAGTACATCCCTCACCCTATGGGCCACATGTGCAAAAATCCCATTTACAGGTCCAGGGAAGGCAACACAGTCGAGGATTACCGCGACCTCCATGAATTGAAGGTGACTTATAGGAGCGATGTGGATGAGGAGAGGAACAGCAACATGAGAAGTCCCACTTATAGCGTGAGCACTATTGAGCCTCGCGAGGACCCCTCCCCTGCAGAAAATGCCGAGCACTTCTTCAGGGGCATCATAGAGGCGGACAACCAATCCCCCTCCGGTAACAGTCTAGAATACAAGTACACTGGCCCTGTCTCGTACACGTACAACCCAAACTTTGATGTTAGACGCCAGTTCTTACACCCAGAGAGGATACGAGAAACAGTGCTTTATGGCACAGCGCCGAGTACTGTTTACGTGGAGCCCAACAGAAATGAATATTTGGAACTAAAAGCGAAACTTCAAGTCGAGCCGGACTACCTCGAAGTTCTTGAGAAACAGACCACTTTCAGTCAGTTTTGAGCAACAGATTTGTCCATGTATGAAGGATTTCCCCCCTTAAACCCACTGGCTCAATATTGAGGGTGCCTTGGCACGACACATCAACAAAATAAGCATTAAACGGGGTGTGCCAAACTCTATTATTCTTATTTCTTAATTACATGACATTGCAGGAACTGAAAGTCTCTCTCTGAACCTAACTGGACGAAAGTTGTTCTACTTAACTGGTGATTTAGAATCTATTTTTATATGGTGAAGATTGAATATACATACATGTAAGTGTACAGGTCAACTTACCCAACTACATTTTCAGGAATATAACCATACATATATTGTGAATCACAAAAATGTTTATAAATCACCATCTGACGAAAAAACACTGTACGGCAGTGTCTCCATCAAACTGCGCAGGACAATTCTCTGCTTTAGTCTGTAAGTAAGTATTTATTGGAGTACTCTGCCATGTATTTTCAAACATTTTGATTCTTCATCAGTATTACCTGTGTCATAATTCCATGATCCTCTGTAAACGTTTATGTTTGTAGTTCCATATCATTTACTGTAGCTCGCATTGTAAAAgtggcttttttttttaaaatggtgGCACACCCCCAATGTTAAAGAAAGACTGCGTCatttaaagaagaaaaaaagttgTCTTTGTATGCTTTCTGCACTTTTTGGAGTTGGAAGGCAAGTGGGCCTTTAAACAGCTATCATTAGGATGATTACTATTAAAAATGAATATGTGCGTTCATTCTTAATATGTATTCTTGATATGTTATCAAATTCATGAATAATAATTGAAGTAATAATTATGTTGTGTAATACTGATCTTTTAATGTGACACCTATTTTTATACAAGCATTCGCAATTCTCTTTCCCTCATCAATTTCATTCGTTTTAATTGCTTTGCACTTATTGCACTATATTGACCAAAATATGTTAATGTCATCAATAAATATGATGTCAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU664052 lncRNA downstream 57544 19005042 ~ 19005285 (-) True G582017
TU664049 lncRNA downstream 59117 19003479 ~ 19003712 (-) True G582014
TU664048 lncRNA downstream 60250 19002321 ~ 19002579 (-) True G582013
TU664041 lncRNA downstream 63738 18998841 ~ 18999091 (-) True G582006
TU664026 lncRNA downstream 77168 18985435 ~ 18985661 (-) True G581991
TU664326 lncRNA upstream 72824 19140290 ~ 19140532 (-) True G582279
TU664395 lncRNA upstream 154153 19221619 ~ 19223542 (-) True G582343
TU664401 lncRNA upstream 170172 19237638 ~ 19237864 (-) True G582349
TU664478 lncRNA upstream 238377 19305843 ~ 19306068 (-) True G582422
TU664507 lncRNA upstream 258149 19325615 ~ 19325952 (-) True G582451
XM_021608700.2 mRNA downstream 661033 18384671 ~ 18401796 (-) False LOC110527435
XM_021608701.2 mRNA downstream 661033 18384671 ~ 18401796 (-) False LOC110527435
XM_036982859.1 mRNA downstream 661034 18391089 ~ 18401795 (-) False LOC110527435
XM_021608702.2 mRNA downstream 661035 18384671 ~ 18401794 (-) False LOC110527435
XM_036982858.1 mRNA downstream 679506 18315416 ~ 18383323 (-) True LOC110528806
XR_005052702.1 mRNA upstream 74680 19142146 ~ 19145574 (-) True LOC118965376
XR_002474071.2 mRNA upstream 78291 19145757 ~ 19154599 (-) True LOC110527100
XR_002474133.2 mRNA upstream 108569 19176035 ~ 19181090 (-) True LOC110527441
XM_021608715.2 mRNA upstream 756165 19823631 ~ 19832571 (-) False LOC110527445
XM_021608716.2 mRNA upstream 756165 19823631 ~ 19832571 (-) True LOC110527445
TU663175 other downstream 827791 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 1019449 18042927 ~ 18043380 (-) True G581089
TU662381 other downstream 1662293 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 2262143 16797782 ~ 16800686 (-) True LOC110527396
TU661516 other downstream 2262207 16797782 ~ 16800622 (-) False LOC110527396
TU665792 other upstream 1148183 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 1705401 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 1771022 20838488 ~ 20839336 (-) False LOC110527470
TU667558 other upstream 2353988 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 2449929 21517395 ~ 21518873 (-) True LOC110527499

Expression Profile