RNA id: XM_021608720.2


Basic Information

Item Value
RNA id XM_021608720.2
length 1440
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC110527446
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19851804 ~ 19881758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGGGCTTTTCTGAGTGGAAAATTATTTAGTGTTCTTTCAGCACCAGTGATTGTAGCTGTCGTTTGTTGCGCACAAAGcgTGAATGAACCAGGGAACATGTCTTTTGTGAAAGAGACGGTGGACAAACTACTAAAGGGATATGATATTCGTCTTCGACCAGACTTTGGAGGGGCCCCTGTTGCAGTTGGCATGAGTATAGATGTGGCGAGCATAGACATGGTATCCGAAGTCAACATGGACTACACTTTAACCATGTACTTCCAGCAGTACTGGAGGGACAAGAGGCTGGCGTACTTAGGGATCCCACTGAACCTCACCCTGGATAACCGGGTAGCAGATTCACTCTGGGTCCCTGACACCTACTTCCTGAATGACAAGAAGTCCTTCGTCCACGGTGTGACGGTCAAGAACCGCATGATCCGCCTCCACCCGGATGGAACAGTGCTCTACGGCCTGAGGATCACAACGACGGCAGCCTGTATGATGGACCTGAGGAGGTACCCTCTGGACGAGCAGAACTGCACTCTGGAGATCGAGAGCTATGGATACACGACAGATGACATTGAGTTCTACTGGAAGGGAGGAGACAATGCGGTGACGGGGGTGACACGCATTGAGCTGCCACAGTTCTCCATAGTGGACTACAAGCTGGTGTCCAGAAATGTTGTCTTTTCCACAGGTGCCTACCCACGACTGTCTTTGAGCTTCAAGCTAAAGAGGAACATCGGCTACTTTATCCTGCAGACCTACATGCCATCCATCCTGATCACCATCTTGTCCTGGGTCTCCTTCTGGATCAATTACGATGCCTCGGCTGCAAGAGTGGCATTAGggatcaccactgtgcTCACCATGACCACCATCAACACCCATCTGAGAGAGACGCTCCCCAAGATCCCCTACGTCAAGGCCATCGACATGTACCTGATGGGCTGCTTCGTCATGGTCTTCCTGGCCCTGCTGGAGTACGCCTTCGTCAACTACATCTTCTTCGGCCGAGGACCACAAATGCAGAAGAAGCTGGCAGAGAAAGCCGAGAGGGCCAACAATGAGAGGGCGGCCAAATATGACACCAATCGGGCGGAGTCCCACGGTAATATCCTGCTGACCACCCTGGAGATCCATAACGAGGTGGCAGGAAATGAGGTCACCACCAGCCTGGCGGACAGCAGGAACTCCTCCGTCATGGGATTTGACAACACCAGCACAGGTACCGGCGTCCAGTGCAGGAAGGCGAGCCGGTCCTCGGGTCCTCGCCACAGCCTCGACAGGCACGCCCAGCTCAAGAGGCACAAATTGCGGCGGCGCTCGTCGCAGCTCAAAATCAAAATCCCTGACCTGACGGACGTAAACGCCATCGACAGGTGGTCGCGGATTATCTTCCCCTCCGTTTTCTCCCTCTTTAATCTAATCTACTGGATGTATTATGTCAACTGA

Function

GO: NA

KEGG:

id description
K05181 GABRB; gamma-aminobutyric acid receptor subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU665283 lncRNA downstream 663 19847720 ~ 19851609 (-) True G583186
TU665321 lncRNA downstream 8443 19843434 ~ 19843829 (-) True G583223
TU665285 lncRNA downstream 28776 19819710 ~ 19823496 (-) True G583188
TU665287 lncRNA downstream 37774 19812037 ~ 19814498 (-) True G583190
TU665303 lncRNA downstream 61455 19790579 ~ 19790817 (-) True G583206
TU665358 lncRNA upstream 8234 19889389 ~ 19892589 (-) True G583255
TU665363 lncRNA upstream 13142 19894297 ~ 19894565 (-) True G583260
TU665380 lncRNA upstream 31104 19912259 ~ 19914265 (-) True G583277
TU665449 lncRNA upstream 115173 19996328 ~ 19996532 (-) True G583337
TU665501 lncRNA upstream 144602 20025757 ~ 20026150 (-) True G583388
XM_021608715.2 mRNA downstream 19701 19823631 ~ 19832571 (-) False LOC110527445
XM_021608716.2 mRNA downstream 19701 19823631 ~ 19832571 (-) True LOC110527445
XR_002474133.2 mRNA downstream 671182 19176035 ~ 19181090 (-) True LOC110527441
XR_002474071.2 mRNA downstream 697673 19145757 ~ 19154599 (-) True LOC110527100
XR_005052702.1 mRNA downstream 706698 19142146 ~ 19145574 (-) True LOC118965376
XM_021608724.2 mRNA upstream 116201 19997356 ~ 20017679 (-) True cfap221
XM_021608726.2 mRNA upstream 147479 20028634 ~ 20038269 (-) False LOC110527451
LOC110528808 mRNA upstream 157325 20038480 ~ 20046983 (-) True LOC110528808
XM_036984478.1 mRNA upstream 168848 20050003 ~ 20054501 (-) False LOC110527101
XM_036984476.1 mRNA upstream 168848 20050003 ~ 20055651 (-) False LOC110527101
TU663175 other downstream 1617234 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 1808892 18042927 ~ 18043380 (-) True G581089
TU662381 other downstream 2451736 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 3051586 16797782 ~ 16800686 (-) True LOC110527396
TU661516 other downstream 3051650 16797782 ~ 16800622 (-) False LOC110527396
TU665792 other upstream 334494 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 891712 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 957333 20838488 ~ 20839336 (-) False LOC110527470
TU667558 other upstream 1540299 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 1636240 21517395 ~ 21518873 (-) True LOC110527499

Expression Profile