RNA id: XM_021608723.2


Basic Information

Item Value
RNA id XM_021608723.2
length 3637
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC110527448
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 19917445 ~ 19958310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGGCTTCTCAGTGCAAACTTCCTCACGTTTTGTTGATTATTTTATAGGTTTAATCGAAAGTAAAGGATACTAAAAACGAACGCTACCAACACGAAGTGGCCAATAGCATTATGTGTCAGGGTTTAGCCTGCGAtagtttactgtacattttcatGTATCCTAAAAACAGAGAGAGCACGACTTTGGTTGGGAAAGCATTGTAGGCAACCAGCCTTTTCTCAGAAAGGGAGCAACTTTGAGAGGATATGGTGCCATTTCCATGGCTTTCTGCTTGAAATGTATCAAGTGATAATTTATCTTAAAGTAAAAGCGTTTTATAGCAATATTGATAATGATATGTAATCCAGGGAGCTACAATTTGCAATGAAAAACGTGTGAAAGTGAATAGGCTAGTCAAAGTTAAGATGTTGCTTGCATACTTTAATGTTTAAGGCTTTTTACGAGTCTCGTTCTGTAGGTAGACGCCCTACTGTACCTTGTGAACAATAACGTCATCATGTCGGTGCATAAACTGGTTACTGTAATTGAATGGAACGGAAGGAGGTGGGGTGCTGCTGTTTAAGACGTTGATCATTGACGTTGCAAAGAAGGACCCGAGCGACTCAAACAATCTCGGCGACTTCCGAACGCGGATGAATTCAACCTAATCCATGGTCGACTATCAGGAGATTTGATGGATTTCCTATAAGAAACTATACTCGGGGTGCATAGTTCCAGTTTATATATACCGCTCCTTCTCCCTGGCTCCCTATACTCATCGCTCTAACAACGCAGAAGTCTCCACCGTCTTCATCATAAGTCATTTTCATGAACAATGACAACCAAGTTGCTGGTGTCTTTCTTACTTCTGTCAGTCCAACGGGTGCGTTCCGACCCAGACCCAAGGGACTACGATGGGGACTATGAGGACACTACTGTCAATCAGATGCTGGCTCCCAAAAACCACCAGGCCGAGGCAACGCTCATATTAAATAACTTACTTAAGGACTACGACAAGACACTACGCCCTGATATTGGAGTTAAACCAACGCTTATCGACGTCGACATATACGTCAATAGCATCGGACCTGTATCATCAATAGACatgGAATACGAAATTGACATCATTTTTGCACAGACGTGGATCGACAGCCGTCTGCAATACAACAGCACTATGAAGATCCTGACTCTCAACAGCAACATGGTGGGAATGATCTGGGTCCCTGACACCATCTTCAGAAACTCCAAGAACGCAGACTCTCATTGGATTACGATGCCCAATCAGCTTCTGCGTATCTGGAACGATGGGAAGATATTATACACGCTGAGGTTGACCATCAATGCAGAGTGCCAGCTGCAGCTCCACAACTTCCCCATGGATGAGCACTCCTGTCCCCTGGTCTTCTCTAGCTATGGTTACCCCAAGGATGAAATGATTTACAGATGGAAAAGGAACTCCATTGAAACCTCAGACCAGAAGTACTGGCGCCTCTACCAGTTTGACTTTATGGGGCTGCGGAATACCACAGACGTCCTAAAAACAACAGCAGGTGATTATGTGGTCATGACAGTGTACTTTGACCTGAGCAGGAGAATGGGTTATTTCACCATCCAGACCTACATCCCCTGTATCCTCACCGTGGTGCTCTCCTGGGTCTCCTTCTGGATCAATAGTGATGCCGCCCCTGCCAGAACAGCACTAGGTATCACCACTGTGTTGACAATGACCACCCTTAGTACAGTGGCCAGGACCTCCCTACCCAGAGTCTCCTATGTGACGGCCATGGATCTCTTCGTCACTGTGTGCTTCTTGTTTGTTTTTGCGGCCATGATGGAGTACGCCATCCAAAACTACTACGCCTACAGGGCACAGAAGCCCCGCTACAACAAGACAAACAAGACACAGAGACTGACCTACTCGATGCTAGACATGGGGCCCAGGTCCCCCACCACCGTGGTACCGTTGAACAACAACTACTCATACTGGCAGGACTATGAGGACGTGTACGAGTGTCTGGACGGGAAGGACTGCCAGAGCTTCTTCTGCTGTTACGAGGAGTGTAAGGGGGGAGGGTGGAGGAAAGGCCGCATCCATGTCGACATTAAGGAGCTGGACGTTTACTCGAGAGTCTTCTTCCCTACGTCGTTCCTCTTGTTCAACATCGTCTACTGGGTCTCTTATCTCTACCTTTAGCAGTTTCAGTTGAACTTGATAGAATTTGTTTGGACAAGTATGAAAAGACTCAAGTGGGAAGAGGAGATGTCACAAGACATAAGATGTCACTCAGTGGCAGCTTTGTGCACGTTGACACTTGATTGGTTGGTGGGTTAGTGTAGCCAACCAATAGACAGCTGTGAGACCCTAACACCAGGATGCTAGCCAGATAAGAGATAATGAAGCATCCATAGTGCCTTCTTCAGGAAGGGGCCATCACCTATACAGAGGTGCAATAAGGGGACTAGAAGCGTTGGAGTTTTTCCTACATAGGTTATCCCACATCCGCCATTTCAACGCATGCTATACTGTTCATTAAAAACAATCCATAGTTAGGATGGACTGCACTATGAAATGATTCTATTGTTGCTTTGTATTTCTTAGTTAGTTGCATAGTCATTGCAAGCCATTTGAAATATATAGAACCTCAATATGATTTATTTTGGACATCAACAGGATCTTAAATATTAGGTCATTGATAACATTGATTTGGTTTAGATTAATATACATTTATATCATAAACATTTGAATTATGTTTCCTACCAAGGGTGATATACAACAAGAACGTGCATAGTATACCTACAACACACCATAACATAATAATTGAAAGATGAAAATACTACTTTTGTAAAATAATGTATCTAATAAAGTTTTCTTTAGTAACATAGAGTTTTCCAGAGAGTATTAATAGACTATTTGATAATTAAATACATTGTCTGAGGACAAGGAATGGTAAGGTTTCAAACTAAAGTAATATTGAGATGTTGTTTAATTAATTTACAGAATGTGGACATACATTTATCTCCATACAGCAGGCCGACAATACATCACAGGCTGAGGGCCAGGGTAGCATTTgggtcaatacagtactgtatatattgtgctAGTATTCAGTACagtaataatacatttttttttatggtttCTCTCCAGCAACACTATTGCTATTTTATTGAGTAAGAACATGTATAGCTCATGTTATATCATACAGTAGCTGTTGTACGAAAACAGATAATAACATCACAAAGAATTGTGAAAGGTGTGTTTTTGGAGTTAAAAATAGTTTTATTTACTGTAAGTAACACTGTTGTTTCTGCAGTGGTGTGACTTAGAAGTATGGTAGTATCCTGTATTCTATGTTTTAAGAGAACGTGTATGTGAGAGATGTTTTCATGCTATTTCCATAGTTGAATGTAGATCATACTTTAGACCAACAACAAAGTGGTTTTCAACTCTGTATAACAACACAAATATTGCACTTCATAAGTGTCTTAGTTTGATATAATGTATTTACAATAAATCAAACACTATTTTCTAAGTCTGATGGAACGCACCCTTTTGTTACAGCAGATCTGAGAGAACCACTGTCTTGGTACAGCTATGCTTTTTAGAGAATCCAGTCTGTGGTATTGCTTAAATTAATAAAATTATCTTTGCTCAA

Function

GO: NA

KEGG:

id description
K05186 GABRG; gamma-aminobutyric acid receptor subunit gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU665194 lncRNA upstream 2611 19914363 ~ 19914835 (+) True LOC110527447
TU665139 lncRNA upstream 65860 19849292 ~ 19851586 (+) True G583051
TU665168 lncRNA upstream 106695 19810427 ~ 19810751 (+) True G583079
TU665167 lncRNA upstream 107728 19809357 ~ 19809718 (+) True G583078
TU665161 lncRNA upstream 114183 19802977 ~ 19803263 (+) True G583072
TU665492 lncRNA downstream 67527 20025837 ~ 20026115 (+) True G583379
TU665493 lncRNA downstream 68055 20026365 ~ 20026866 (+) True G583380
TU665494 lncRNA downstream 68577 20026887 ~ 20027228 (+) True G583381
TU665490 lncRNA downstream 69016 20027326 ~ 20028201 (+) True LOC110528807
TU665514 lncRNA downstream 83191 20041501 ~ 20041702 (+) True G583398
XM_021608721.2 mRNA upstream 2265 19882568 ~ 19915181 (+) False LOC110527447
XM_021608713.2 mRNA upstream 129442 19782845 ~ 19788004 (+) True LOC110527444
XM_021608712.2 mRNA upstream 486571 19425365 ~ 19430875 (+) True LOC110527443
XM_021608711.2 mRNA upstream 724491 19183383 ~ 19192955 (+) True LOC110527442
XM_021608705.2 mRNA upstream 1335935 18539259 ~ 18581511 (+) True LOC110527438
XM_036982865.1 mRNA downstream 61172 20019482 ~ 20028775 (+) False LOC110528807
XM_021608728.2 mRNA downstream 104666 20062976 ~ 20064980 (+) True LOC110527452
XM_021608729.2 mRNA downstream 135484 20093794 ~ 20098063 (+) False LOC110527453
XM_021608730.2 mRNA downstream 135493 20093803 ~ 20098063 (+) True LOC110527453
LOC118965349 mRNA downstream 203770 20162080 ~ 20162895 (+) True LOC118965349
TU664011 other upstream 940447 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 1424537 18492227 ~ 18492909 (+) True G580997
TU662252 other upstream 2100598 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 2236778 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 2516913 17398793 ~ 17400533 (+) True G580179
TU665478 other downstream 59545 20017855 ~ 20021727 (+) False LOC110528807
TU665732 other downstream 280601 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 1122518 21080828 ~ 21082615 (+) True G584643
TU667948 other downstream 1994719 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 2398273 22356583 ~ 22360227 (+) True c7h10orf53

Expression Profile