RNA id: TU665478



Basic Information


Item Value
RNA id TU665478
length 538
RNA type TUCP
GC content 0.43
exon number 4
gene id LOC110528807
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20017855 ~ 20028775 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTACTAGTCTATTATAAAAAGGTCAGTTGTAAGAACTGCACAAACAAAACATGCAGTTGGTTTGGACAAAGCCAGTGGATGCTGATTGATGGCTTGCTGCTTTGAATCGGACGATTATTTCAGACTTTTAAGTACCGAAAGTCAGCTTACAGTTCATTCAAGTCTATAATTAGGTTACAGTTTACTGGTAAATAATGCTTGTGACTGACAAAATGCATATTGTAATTATTGGAATCCTACTGGGCATGTACATGAAGGTTCAAGCAGACCGTGAGCCGTACATCATTCttattagagaggaggagaggtgcctTCATGAGTTGCGACTGCATAATGTGTCCAAAACTCCCCAACCAGACTGCAAGGGTATGTGGGACCACTTGAATTGCTGGTCTCCTGCTTTTGTAGGGGAAACTGCATCACACAACTGTCCCGATTTCTTCAAATCAGAAGGTAAAGTGGACCGGAACTGCACAGACATGGGCTGGACGGACCCATTCCCTCCTTACGAGCATGCATGTTTCAACGAAACCTTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU665194 lncRNA upstream 103020 19914363 ~ 19914835 (+) True LOC110527447
TU665139 lncRNA upstream 166269 19849292 ~ 19851586 (+) True G583051
TU665168 lncRNA upstream 207104 19810427 ~ 19810751 (+) True G583079
TU665167 lncRNA upstream 208137 19809357 ~ 19809718 (+) True G583078
TU665161 lncRNA upstream 214592 19802977 ~ 19803263 (+) True G583072
TU665492 lncRNA downstream 4110 20025837 ~ 20026115 (+) True G583379
TU665493 lncRNA downstream 4638 20026365 ~ 20026866 (+) True G583380
TU665494 lncRNA downstream 5160 20026887 ~ 20027228 (+) True G583381
TU665490 lncRNA downstream 5599 20027326 ~ 20028201 (+) True LOC110528807
TU665514 lncRNA downstream 19774 20041501 ~ 20041702 (+) True G583398
XM_021608722.2 mRNA upstream 59545 19917445 ~ 19958310 (+) False LOC110527448
XM_021608723.2 mRNA upstream 59545 19917446 ~ 19958310 (+) True LOC110527448
XM_021608721.2 mRNA upstream 102674 19882568 ~ 19915181 (+) False LOC110527447
XM_021608713.2 mRNA upstream 229851 19782845 ~ 19788004 (+) True LOC110527444
XM_021608712.2 mRNA upstream 586980 19425365 ~ 19430875 (+) True LOC110527443
XM_021608728.2 mRNA downstream 41249 20062976 ~ 20064980 (+) True LOC110527452
XM_021608729.2 mRNA downstream 72067 20093794 ~ 20098063 (+) False LOC110527453
XM_021608730.2 mRNA downstream 72076 20093803 ~ 20098063 (+) True LOC110527453
LOC118965349 mRNA downstream 140353 20162080 ~ 20162895 (+) True LOC118965349
XR_002474135.2 mRNA downstream 288336 20310063 ~ 20315887 (+) False LOC110527457
TU664011 other upstream 1040856 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 1524946 18492227 ~ 18492909 (+) True G580997
TU662252 other upstream 2201007 17813342 ~ 17816848 (+) True G580365
TU662189 other upstream 2337187 17670275 ~ 17680668 (+) True G580315
TU662040 other upstream 2617322 17398793 ~ 17400533 (+) True G580179
TU665732 other downstream 217184 20238911 ~ 20239797 (+) True G583605
TU666895 other downstream 1059101 21080828 ~ 21082615 (+) True G584643
TU667948 other downstream 1931302 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 2334856 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 2664762 22686489 ~ 22687846 (+) False LOC110527523

Expression Profile