RNA id: XM_036984476.1


Basic Information

Item Value
RNA id XM_036984476.1
length 2698
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110527101
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20050003 ~ 20055651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTCGCTCCGCCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTGCCCTACAACTGCGGAAAAATAAGCCACTGAAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGGATCCCATCGTGGTTGAGGAGCCCATCTCTCCACCAGCGAATCCCATCGTGGATGAGCTGCCCATCTTTCCACCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGGATCCCATCGTGGTTGAGGAGCCCATCTCTCCACCAGCGAATCCCATCGTGGATGAGCTGCCCATCTTTCCACCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGAactactcttcctcctccctccctattGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTGCCCTACAACTGCGGAAAAATAAGCCACTGAAGGGTCTGACACAGCgacataaaaaaatacagaaagACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTCGCTCCGCCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATAAAAAAAGTAAGACAGACATGGAAACTTCAGTTCCACAGGCCAGAactactcttcctcctccctccctattGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTGCCCTACAACTGCGGAAAAATAAGCCACTGAAGGGTCTGACACAGCgacataaaaaaatacagaaagACATGGAAACTTCAGTTCCACAGGCCAGaactactcttcctcctccttccctatTGGATTATTTCGCTCCGCCTACAACTCAGAGATGTCAAAGGGCCCTGGATTTCTTACCTCCACCTCCAGTGAAGCCTGTTGTGGTTGAGCTGCCCATCTCTCCACCAGTGAAACCCATCATGGGTGAGCTGCCCATCTCTCCACCAATGAAGCACGTCATGTTTGAGCTGCCGATCGCTCCAGTGGAAGCTGAGTCGCTTCAGAGATTTGAGGGTTTGACACAGCGACATaaaaaaagaaagacagacaTGGAAACTTCAGTTCCACAGGCCAGAactactcttcctcctccctccctattGGATTATTTTGCTCCACCTACAACTCAGAGATGTCAAAGGTCCCAGGATTTCTTCCCTCCACCTCCAGTGGAGCCCATCGTGGTTGAGGAGCCCATCTGTTCAGTGGAAGCTGAGTCTCTTCAGAGTTTTGAGGGTTGCCAAATGGCCCAACATGGAGTTAACCCATATTCAATGAGAGCAGTAACAGGTGCTCCAATGAGCAAATATCCAGGTTATCCATGTACAACGACCAAAGCTGGGCCTGGAATATCAGACGCTTCCCTGGTTCACATGCTCAGACCTCTCTCACCGATGTTGGTGCCGGAAGATGATGGAGGATGGGACTCTGCTGGGGATCACATGTCCACCCCTGGGACTCCCTTCTACATGGGTTGACTCTTTCACTGGACCTTTGAAGCCCTTTAAGCTATTTTGCCCGAAGAAAAGGACGCAGTGGAGCATAGCATTTTTCTTTTTAAAATAAACTCAAGCATACCCCACTTGGTCTTAAAATAAACTTATAATAAAATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU665504 lncRNA downstream 11781 20028701 ~ 20038222 (-) True LOC110527451
TU665502 lncRNA downstream 23137 20026650 ~ 20026866 (-) True G583389
TU665501 lncRNA downstream 23853 20025757 ~ 20026150 (-) True G583388
TU665449 lncRNA downstream 53471 19996328 ~ 19996532 (-) True G583337
TU665380 lncRNA downstream 135738 19912259 ~ 19914265 (-) True G583277
TU665528 lncRNA upstream 557 20056208 ~ 20056415 (-) True G583412
TU665545 lncRNA upstream 10259 20065910 ~ 20066495 (-) True G583427
TU665567 lncRNA upstream 29664 20085315 ~ 20085516 (-) True G583449
TU665579 lncRNA upstream 35366 20091017 ~ 20091243 (-) True G583461
TU665600 lncRNA upstream 38205 20093856 ~ 20098023 (-) True G583481
LOC110528808 mRNA downstream 3020 20038480 ~ 20046983 (-) True LOC110528808
XM_021608726.2 mRNA downstream 11734 20028634 ~ 20038269 (-) False LOC110527451
XM_021608724.2 mRNA downstream 32324 19997356 ~ 20017679 (-) True cfap221
XM_021608717.2 mRNA downstream 168245 19851805 ~ 19881758 (-) False LOC110527446
XR_002474134.2 mRNA upstream 109624 20165275 ~ 20173637 (-) False LOC110527454
XR_005052542.1 mRNA upstream 145949 20201600 ~ 20206635 (-) True LOC118965267
XM_036982866.1 mRNA upstream 162244 20217895 ~ 20255944 (-) False LOC110527455
XM_036982867.1 mRNA upstream 162244 20217895 ~ 20265255 (-) True LOC110527455
XM_021608732.2 mRNA upstream 242022 20297673 ~ 20310091 (-) True LOC110527456
TU663175 other downstream 1814965 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 2006623 18042927 ~ 18043380 (-) True G581089
TU662381 other downstream 2649467 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 3249317 16797782 ~ 16800686 (-) True LOC110527396
TU661516 other downstream 3249381 16797782 ~ 16800622 (-) False LOC110527396
TU665792 other upstream 159998 20215649 ~ 20249985 (-) True G583661
TU666686 other upstream 717216 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 782837 20838488 ~ 20839336 (-) False LOC110527470
TU667558 other upstream 1365803 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 1461744 21517395 ~ 21518873 (-) True LOC110527499

Expression Profile