RNA id: XR_002474135.2


Basic Information

Item Value
RNA id XR_002474135.2
length 1373
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110527457
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20301287 ~ 20315887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGTTACTTCCGCAATCACATGATGCGGAAGTTTAAAGTGGCTGACGAGACGCTGATCATAACGTTTGTTAAAGCATTTCTAATATCGCACATTATCAGAGGGGCATGTTGGTCCACGCTGATGTGATGACATCGTGCAGTTTCTGCAGTTCGGATGGCGGGACActaccgccaccagcctgtaccgttgacaccaggttGGATGGGTCcctggactcatgctgcttatgccaaatcttgactctgccatcagcatgacgcaacaggaacggGGATTCcttggaccaggcaatgttttcccACTCCTCAATTGTGCAGTAATAGTGAACGTGTGCCTTTCTCTtctttttagctgataggagtttaacccggtgtggtcgtctgctataatagcccatccgtgacaagtaTCAACAAGTTGTCTGTTCCGAGATCTCATTCTGCACACCGCTGTTGTATTGCGTTGTTATCTGTCTGGTTGTGGCCCACCTGTTAGCTTGCGTGATTCtggccattctccttcgacctctctcatcaacgagctgttttcgcccacaggactgccactgactggatgtttttttgtttgtcgcaccattctggggaaaccctagacactgtcgtgagTGAAAAGCCCAGGAGTTCGGCCATTTCGGAGATACTGGAATCgccgatcataccacgctcaaagtcgcttaggtcattAGTTTTGCCcaacgttcaatcgaacagtaactgaatgcctcaatgtctgtctgcctgctttatatagcaagctatagccacgtgactcactgtatagtaggagcgatccattttgtgaacagggtggtgtacctaataaactaacCAGTGAGTGTATATATTCATGAAAATAATGTCAGGTCACAACTCGCTGCTCTTAAAGCTGGaatctgcagttgaaacaataacaaagtggacACCCCACCTCTGTTTAGGTAAAAGCTTAGGGATGGGCCAAGAGAAAATGTCTCTATGGCCATCCCtaagctttttaccaaaacattttgttattgtggggtgtaaccactctcaaactcatagacagagctatggatgcaaagactgaccatacatgatatcaaaatgatagctttaaccatgttgaggcttgTTTATATTGTTTACAAAGTTTGGAGTAAAACAggcttatatttggggttctaATGGgctacaacagttgaactaagctcatgagagccttcagaaagtattcacacccctattagtttttccacattttgcctgaatttaaaatggattaaatttagattttgtgtcactgatctacacaaaataatgtCAACATGTTGTTCGAAATGCTTTTttgaaatgaataaaaaatgaatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU665763 lncRNA upstream 31474 20278343 ~ 20278589 (+) True G583634
TU665754 lncRNA upstream 42924 20266895 ~ 20267139 (+) True G583626
TU665714 lncRNA upstream 60083 20215660 ~ 20249980 (+) True G583591
TU665730 lncRNA upstream 73481 20235661 ~ 20236582 (+) True G583603
TU665727 lncRNA upstream 76649 20231581 ~ 20233414 (+) True G583600
TU665954 lncRNA downstream 127552 20443439 ~ 20443982 (+) True G583818
TU665962 lncRNA downstream 142166 20458053 ~ 20458350 (+) True G583826
TU665966 lncRNA downstream 149712 20465599 ~ 20465817 (+) True G583830
TU665967 lncRNA downstream 150518 20466405 ~ 20466640 (+) True G583831
TU666012 lncRNA downstream 233274 20549161 ~ 20578395 (+) True G583871
LOC118965349 mRNA upstream 147168 20162080 ~ 20162895 (+) True LOC118965349
XM_021608729.2 mRNA upstream 212000 20093794 ~ 20098063 (+) False LOC110527453
XM_021608730.2 mRNA upstream 212000 20093803 ~ 20098063 (+) True LOC110527453
XM_021608728.2 mRNA upstream 245083 20062976 ~ 20064980 (+) True LOC110527452
XM_036982865.1 mRNA upstream 281288 20019482 ~ 20028775 (+) False LOC110528807
XM_036982877.1 mRNA downstream 211541 20527428 ~ 20539663 (+) False LOC110527460
XM_036982876.1 mRNA downstream 212808 20528695 ~ 20539663 (+) False LOC110527460
XM_036982875.1 mRNA downstream 213059 20528946 ~ 20539663 (+) True LOC110527460
XM_036982879.1 mRNA downstream 318248 20634135 ~ 20655294 (+) False LOC110527464
XM_021608739.2 mRNA downstream 318248 20634135 ~ 20658344 (+) True LOC110527464
TU665732 other upstream 70266 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 288336 20017855 ~ 20021727 (+) False LOC110528807
TU664011 other upstream 1333064 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 1817154 18492227 ~ 18492909 (+) True G580997
TU662252 other upstream 2493215 17813342 ~ 17816848 (+) True G580365
TU666895 other downstream 764941 21080828 ~ 21082615 (+) True G584643
TU667948 other downstream 1637142 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 2040696 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 2370602 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 2385307 22701194 ~ 22703821 (+) True LOC110527523

Expression Profile