RNA id: XM_036982880.1


Basic Information

Item Value
RNA id XM_036982880.1
length 2997
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110527466
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20654190 ~ 20676948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAGGAAGGCCAACCAAAATAAGCGCGCTCAGTCTATGCGTTCTAATCTGAACGTGGTGGAGCTATGAGAAGATAAGTGCCATTGGATTGTATTCGTCTGTGCCATAGCTTTTGGAGAGAGACAAGCCAACTAAAGTAACCTTCTAATAATAATCTTATTATAATACTTCGACTAGTTTTATTTTACGCAAGTATAGTGTATTTTACGCAAGTGTTATATGGTGATGACCTGATTCCTGTTTGGATTCATCTGGATTGATCGGATATTAGTGGCTATTATTATTGATTTATCATTATTATTGATTTATCATTACTATTTCTATTTCCATTAAACATAATTTTTAACTCCAATTTGCAACACCATAATTGTCTACTACGGTTTCCAAGCGGAATGAGCCTGTTTTGCACCTCTTGAGGATACAAGGAGTCTggattcatgttcagaaaatgaAGTTTAAGTTTTTTACCGTGGGCTCTATACTACCACCTCTAGCCTATAACTCTGTCGGCAGTTGATATTGCCAATTGAAAACGTGATGCTGTTGCCTATTGTTGTTCACTGACGGTTGAAATATTATAATTGTATCTCCATGTGAAACATTCTCGAATGTGGATCACTGCAAACGATGTATACCGAGGTGGCTAATTTAAACTTCAGCTCTAATGGAAGCATCGAGGATCCACTGAGCTCTCTGGATCAAGAATGGAACGAGCCCCCGGCGAAAAGACTGTCTCGGACCGGACACCATGTGATGTCCGTCTTCCTTGGATCTATTATGGTTTTTGGTTTCATCAATAACCTGGTGGTATTGATCCTGTTTATTAAGTTCAAAACTCTGCGGACTCCTGTGAACATGCTTTTGCTGAACATCAGCGTGAGTGACATGCTGGTGTGCCTCTGTGGCACCACGCTCAGCTTTGCATCCAGTCTACAGGCACGCTGGCTGTACGGGAAGCACGGGTGCATGTGGTACGGCTTCGCCAACTCTTGTTTCGGAATTGTGTCGCTAATCTCGCTGGCCTTCCTCTCCTATGACCGCTACAGCACCTTAACCGTGTACAACAAGCAAGCCCCCGACTACCGTAAGCCTCTGCTGGCCGTGGCGGGCTCCTGGCTCTACTCCCTGTTCTGGACAGTGCCCCCCCTGCTGGGCTGGAGTAGTTACGGCCTAGAGGGGGCCGGTACCAGCTGCTCGGTCACCTGGACATCCCAGACGCCCCAGTCTCACTCCTACATCATCTGCCTGTTCATCTTCTGTCTGGGTCTGCCTGTGCTGGTCATGGTCTACTGCTACGGGAGGCTGCTCTACGCTGTCAAACAGGTGGGGAGGATCCGTAAGTCGGCGGCGCGGCGGAGAGAGTTCCACATCCTGTTCATGGTGATCACCACAGTGGTGTGTTACCTGCTGTGCTGGATGCCCTACGGCGTGATCGCCATGATGGCCACCTTTGGACACCCGGGCCTTATCACCCCCATCGTGACTGTGGTGCCCTCCATCATGGCTAAGAGTAGCACCGTCATCAACCCCCTCATCTATATACTCATGAACAAACAGTTCTACAGGTGTTTCCTGATCCTGTTCCACTGCAAGCGGCCCAGTTCTGAGAACGGCGTCTCTTCCATGCCCTCCAAGACCACCGTCATCCAGCTCAACCGCCGGGGCCACAGTAACAACGTAGCCCTCACACCCCAGCTCTCCACCGGCGCCAACCaccataaccacaaccacacGGTGGAGTGCAGCACTAACAACCGTGAAGTCACCACCCCCGTCTCCGAACAGACCAGCCCAGACCCCAACCAAGAGATCACCTCCTGTGGACAGCCGCGTACCCCCCGAAGCCCCTCTCAACCCACCCCCCCTTTCCCCCATGTGACAAACGCTATCCAGTGATCACCACCGAGAACTCTAGAGGATATGGTGTTATCCCTGGCATTTGTCATGTGGTGTCGCCCAAAAACTCAGTCTACACAGTATATCATGTGGCATCACCCAACAACTCCCCATAGTGATTTGTCATCATGAGAACGCCTCAACAACAGACTACCCATAAATGATCCATAAATGATCCATCACGACGTTGTGTCACCAGAGAACTCTTCTAAACACACAGTCAGTGATCTAATCCACAACGTTACCCAGACAGAGAACTATCAATATCTTCTACGAACAAAGTGATCTATTCCACGTCATCACCCCAGAAACTACACGGTATCTTATAGAACAGGGGACCCCAGCTGGCGGCCTGCGGGTGgatttatttggccccccaagttcatggcaaatataaataataatatatttttttttttgtgtggtatTTTTGTCGTTGGATATGAGACTGTAAGAACATGAAATCAACGGAAATGGATTTTAAGTTTGGAAACCTGTTTAGAAATGATTATGCTTTAGTAAACGTTATATCTGTTTGGACTTCTTGCTGTCAGTTGGcagtaattatgttctggccccccgACCATCCGTGCATCGgcccgcagctgaatctagttgatgatccatgTTATAGAAGGTGTGTCAACCGCCCCAACCCATAGAGATGGTCAACTGTTACTTTGTCACTCAGTAAAGGTGTAGATATAAATTCCTGTCAAGTCTTGCCGTGAGAAAACGCAACAGTGTGGTGTTGTTTACTTAAAAACAAAACGTGTATTTTTCCTCAACTTCCGTTATCATATTGTTACATGTGTTACGTCGATAGACACCAGAGTTGTATTAAGACTGCAGTGGCTTTAGTGTTGTCATTACTGTTACagttcaaaaaagtattttgtcataACTGTTACAGTGTGCTGTCATATAACAGCAATAACAGACAGTCCATCTATTCATTTGTTCTAAAGCAGCTATGTGAATGATGCCGGTGAAGCTGAATGCTTTGTACCTCATCTGTGAGATCAAATCACCTCGGGCCTCATTTGTTTGCTCAGTTTTTATTCTACATTTCAGCATACCATTAGTTCTTGAAACAATAGG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU666290 lncRNA downstream 75499 20549144 ~ 20578691 (-) True LOC110527461
TU666289 lncRNA downstream 80479 20540726 ~ 20573711 (-) False LOC110527461
TU666297 lncRNA downstream 96691 20542715 ~ 20557499 (-) True G584137
TU666296 lncRNA downstream 113004 20540941 ~ 20541186 (-) False LOC110527461
TU666226 lncRNA downstream 185586 20468397 ~ 20468604 (-) True G584077
TU666409 lncRNA upstream 22664 20699612 ~ 20699889 (-) True G584233
TU666416 lncRNA upstream 32030 20708978 ~ 20709240 (-) True G584240
TU666419 lncRNA upstream 36700 20713648 ~ 20713971 (-) True G584243
TU666439 lncRNA upstream 50205 20727153 ~ 20727414 (-) True G584263
TU666661 lncRNA upstream 60223 20737171 ~ 20737421 (-) True G584453
XM_021608738.2 mRNA downstream 66915 20583202 ~ 20587275 (-) True LOC110527463
XR_005052543.1 mRNA downstream 94492 20540604 ~ 20559698 (-) False LOC110527461
XM_036982878.1 mRNA downstream 94492 20547724 ~ 20559698 (-) False LOC110527461
XM_021608737.2 mRNA downstream 125297 20521527 ~ 20528893 (-) True LOC110527462
XM_036982874.1 mRNA downstream 136823 20355176 ~ 20517367 (-) True LOC110527459
XM_021608741.2 mRNA upstream 82056 20759004 ~ 20765110 (-) True LOC110527467
XM_021608746.2 mRNA upstream 96206 20773154 ~ 20777946 (-) False otos2
XM_021608745.2 mRNA upstream 96206 20773154 ~ 20778053 (-) False otos2
XM_021608743.2 mRNA upstream 96209 20773157 ~ 20777940 (-) False otos2
XM_021608742.2 mRNA upstream 96209 20773157 ~ 20777993 (-) False otos2
TU665792 other downstream 404205 20215649 ~ 20249985 (-) True G583661
TU663175 other downstream 2419152 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 2610810 18042927 ~ 18043380 (-) True G581089
TU662381 other downstream 3253654 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 3853504 16797782 ~ 16800686 (-) True LOC110527396
TU666686 other upstream 95919 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 161540 20838488 ~ 20839336 (-) False LOC110527470
TU667558 other upstream 744506 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 840447 21517395 ~ 21518873 (-) True LOC110527499
TU668281 other upstream 1415864 22092812 ~ 22094339 (-) True LOC110527506

Expression Profile