RNA id: XM_021608741.2



Basic Information


Item Value
RNA id XM_021608741.2
length 990
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110527467
representative True

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20759004 ~ 20765110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcctctaggaagGAATGTTTGTTCTCTGGGCCTGTGGGGAGACTCCTGCTTCCACTGCTCCTGATTCTCCTCCTGCTTCCTCTACCCACTGCTTCCTGAGACTCAGAGAGACGCCTGGGACAGAGACGAAGACCATGGCTTTCCACAACCTCTGTCTGCAGGTTCTACTGCTAACGGCCTTCCTCTCCTACTGCGCTCACTCAGATGGCGCAGGGGAGAACAAGCTCCACAGACTACTGAAGAAAAGAGATGTGGGCGGAGGTACGAAGCCTGCGGGGGTGGCGGTGGCCCCCTCCAAGGCCAAAGAGTTCCTGACCTCCCTACGGAGGCCCAAGAGGAACATCTGGGACCGCAGCAGGCCAGATGTGCAGCAATGGATCATGCAGTTCATGCACATGGGGTATGACGAGGCGAGGCTTGAGACTGACCTGTCCTACTGGATGGACCTGGCCCGGTCGTCAGACCAAGGTCGCCAGCACCATTATGACGAGAACGCCCCCATCGGGCCCCAGGACCCCGGTTCCTACAGACACGGCGCCAATGTCAATTATGACTACTATTAAttggccagctgtgatttactcAGTTTCTCTGTCTCAACATAACAATCACACGAGCTTAAAGAGAGAGTTCTGAGATTTTACATAGCAAGATATGTGTTCCCTTAGACGACTTcaaagtaaggaaacaaatatGTTGTTTTGTAAAATCGCTGAACTGTCCCAATCACATGAATGCTTCCCTCTTCTGCGACTTATCCCTCTGATGCTATTCTGCACACATACAGTAATGTAGCCTTCTCTGTAATGCAATAAATGGAGCTAAGACATGCCTGTCCCAGACTATGGATTGGGTTTCACTGTCTCTACATTTTATCCTTTGCTGTCTGGGAGATTGAGACCTTCTGATGTACACGCTGTGATGGGACCACAATGCATTGGGTTGATCTGtctgaataactaaataaaagACAGTCAAAACCTTTAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU666661 lncRNA downstream 21583 20737171 ~ 20737421 (-) True G584453
TU666439 lncRNA downstream 31590 20727153 ~ 20727414 (-) True G584263
TU666419 lncRNA downstream 45033 20713648 ~ 20713971 (-) True G584243
TU666416 lncRNA downstream 49764 20708978 ~ 20709240 (-) True G584240
TU666409 lncRNA downstream 59115 20699612 ~ 20699889 (-) True G584233
TU666690 lncRNA upstream 13103 20778213 ~ 20778419 (-) True G584481
TU666692 lncRNA upstream 18096 20783206 ~ 20783463 (-) True G584483
TU666696 lncRNA upstream 22305 20787415 ~ 20787710 (-) True G584487
TU666699 lncRNA upstream 27762 20792872 ~ 20793105 (-) True G584490
TU666709 lncRNA upstream 40623 20805733 ~ 20805942 (-) True G584500
XM_036982880.1 mRNA downstream 82056 20654190 ~ 20676948 (-) True LOC110527466
XM_021608738.2 mRNA downstream 171729 20583202 ~ 20587275 (-) True LOC110527463
XR_005052543.1 mRNA downstream 199306 20540604 ~ 20559698 (-) False LOC110527461
XM_036982878.1 mRNA downstream 199306 20547724 ~ 20559698 (-) False LOC110527461
XM_021608737.2 mRNA downstream 230111 20521527 ~ 20528893 (-) True LOC110527462
XM_021608746.2 mRNA upstream 8044 20773154 ~ 20777946 (-) False otos2
XM_021608745.2 mRNA upstream 8044 20773154 ~ 20778053 (-) False otos2
XM_021608743.2 mRNA upstream 8047 20773157 ~ 20777940 (-) False otos2
XM_021608742.2 mRNA upstream 8047 20773157 ~ 20777993 (-) False otos2
XM_021608751.2 mRNA upstream 15414 20780524 ~ 20787190 (-) False LOC110527469
TU665792 other downstream 509019 20215649 ~ 20249985 (-) True G583661
TU663175 other downstream 2523966 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 2715624 18042927 ~ 18043380 (-) True G581089
TU662381 other downstream 3358468 17397857 ~ 17400536 (-) True G580487
TU661518 other downstream 3958318 16797782 ~ 16800686 (-) True LOC110527396
TU666686 other upstream 7757 20772867 ~ 20778065 (-) True otos2
TU666669 other upstream 73378 20838488 ~ 20839336 (-) False LOC110527470
TU667558 other upstream 656344 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 752285 21517395 ~ 21518873 (-) True LOC110527499
TU668281 other upstream 1327702 22092812 ~ 22094339 (-) True LOC110527506

Expression Profile