RNA id: XM_021608750.2


Basic Information

Item Value
RNA id XM_021608750.2
length 2395
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC110527469
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20780524 ~ 20837355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGTGCTATTTTTACCAGCTAGCAGGGAGGGATACGGCACAAGCCATGGACAGGCTGAACAGGAGTCGGGACCACATTTGAATATGAGAAGTGGTTCCGAAAGaagGACTCCATGAAAAATGACGGAGGAGGTGATAGTTATAGCCAAGTGGGACTACTCGGCTCAGCAGGAACAAGAACTTGACATCCGGAAAAACGAGCGGCTGTGGCTCCTGGATGACAGCAAGACGTGGTGGAAGGTGAGGAACACCTCCAACCGGACCGGCTACGTCCCCTCTAACTATGTGGAGAGGAAAAACAGCTTAAAGAAGGCCTCGCTGGTGAAAAACATCAAAGACACACTCGgCCTGGGGAAGACGAAGAGGAAGACGAGTGCCCGCGATGCCTCGCCAACGCCCAGCACGGACGCAGAGTACCCGTCCAATGGTGGCGGAGGTAGCAGCGCCGAGCGTATCTACGACCTCAGCATCTCAGCCCTGGTCAAGTTCGCCTACGCGGCGGAGCGGGAAGACGAGCTGACACTGGTGAAGGGGTCAAGGGTCATTGTCATGGAGAAGTGTAGCGACGGCTGGTGGCGAGGGAGTTCTGAAGGTCGGGTAGGTTGGTTCCCCTCTAACTATGtcctggaggagggagaggaggaggccgTCTCGGGGGACCTAAGCGGAGGTTACCCAGGGCAGGGGGCAGGGTCGGCAGGGGTTATCAACGGGACCACCAGGGCGCTCCACACTGTCCAGACGCTGTACCCTTTCAGCTCTGTGACAGACGAGGAGCTAAACTTTGAAAAGGGCGAAGTGATGGAGGTGCTGGAGAAACCGGAGAACGACCCTGAGTGGTGGCGGTGTCGGAACGCCCGTGGACAGGTGGGCCTGGTGCCAAAGAACTATGTGGTTATACTTAGCGACGATCCGGCCCCCGGGGGTGGGATGGGCTCGGGCCCCCACTCGCCCCAGATCAACTACACAGGGCCGGCCCGCGTAGGAAAGTTTGCCGGGAAGGACTGGTACTATGGGGGAGTGACCAGGCATCAGGCAGAGTGTGCGCTCAACGAGAGAGGAGGTCAGGGAGACTTCCTGGTCAGAGACAGCGAATCATCGcccagTGATTTCTCCGTGTCCCTCAAGGCGATGGGAAAGAACAAGCACTTCAAGGTTGCGCTGGCGGAGGGGGTCTACTGTATCGGCCAGAGACGCTTCAGCAGCATGGACGAACTGGTGGAGCATTACAAAAAAGCCCCGATCTTCACCAGCGAACATGGAGACAAACTCTACCTGGTCAAACCGCTgctgtgaccacacacacacacacacacacacacacacacacacacacacacacacacacacacaatccggACCCCGGTGCTCGGCCTGGCCTAACAACAAGCCTTATTACTGGACTTGCCACTGACTGATCTGAGCACAGCAAAATCCACTGCTCTGCCCATGCCCCTTCAATACAACAGTTAGCACAGAGAGAGACTCAAATGGAACATGTTGGCCACCGTAGCTCAGATTCCTGTCAGAATAGTGACATGGAGTCCTGTCCAGAAGTGTCCAGAGAACGCCTTCACTAAGGCATCGTCTGTAAGCATCTGCTCTCGGCCTTGGCTGACAACTCCACCTCCTAGTAAAGCCCTGCCGGAGCCTCCTAGGTTTTAGGAGTGAGCACGGATGGGGATTTACAGTCAATGGTTCCTTCACAACAGCTACATACACCATGAACGTGAATATTTAATGTGTTGACATTGACATCACATTATCACTGGAGACCTTttggattttttttgggggggggggcgggaCAAACGGGAGTAGAGAAACAGCTCTTCTCTTTTTGCTTGTCTCCAGTAGGTGTTGTTGCTTTGTCTGTCGTTATCGAGCGACCCGTCGTTTGCAGAAAGTAGTATTACGTTTCCATAAAGACTGTTGTACCAGAAAGAAAGGCACCACAACTGGCACTGCATTAACCAGATGAGGAAAGGACGCCCTCTGTAGGTGTATTGTGGAATGTCCGTGGATGTGTACCAGCCACACCCTCCTACTGCTCAAATGTTCCCCCCGAACGTTCTCTTCGAATCTCTCCTCAGCGTCCGGGTGAAAACGTCGCTGACCGAGGACGGAGATTCAAGAGCGATAAGAAAACGTTTTGTGGGTTGTCTGTTTGCCAGTGAAAGTCTGTTCAACATTTTGTTTCCTGCTTTTAAAAAAGAAAAACTGTCTTAATGTTACTGAGCACTGTTATTTAAATCTTGTTTTCAGCTCTGTATGTATATTTAAAAAGAAGAATAAGGTGAATATTATATGAATTTAGATACAGCTAAAAGGTACTGTACTCCAAGACGGTGTGGTGACTGAGGAATGAAATACTTTTGTTCAATTAAAAGGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU666690 lncRNA downstream 2105 20778213 ~ 20778419 (-) True G584481
TU666661 lncRNA downstream 43103 20737171 ~ 20737421 (-) True G584453
TU666439 lncRNA downstream 53110 20727153 ~ 20727414 (-) True G584263
TU666419 lncRNA downstream 66553 20713648 ~ 20713971 (-) True G584243
TU666416 lncRNA downstream 71284 20708978 ~ 20709240 (-) True G584240
TU666670 lncRNA upstream 12706 20838488 ~ 20839336 (-) True LOC110527470
TU666710 lncRNA upstream 46086 20871868 ~ 20873911 (-) True G584501
TU666763 lncRNA upstream 48528 20874310 ~ 20874570 (-) True G584542
TU666783 lncRNA upstream 66740 20892522 ~ 20893678 (-) True G584555
TU666730 lncRNA upstream 117141 20942923 ~ 20943944 (-) False LOC110527476
XM_021608745.2 mRNA downstream 2471 20773154 ~ 20778053 (-) False otos2
XM_021608742.2 mRNA downstream 2531 20773157 ~ 20777993 (-) False otos2
XM_021608746.2 mRNA downstream 2578 20773154 ~ 20777946 (-) False otos2
XM_021608743.2 mRNA downstream 2584 20773157 ~ 20777940 (-) False otos2
XM_021608741.2 mRNA downstream 15414 20759004 ~ 20765110 (-) True LOC110527467
XM_021608752.2 mRNA upstream 12633 20838415 ~ 20839399 (-) False LOC110527470
trnat-ugu-34 mRNA upstream 105326 20931108 ~ 20931180 (-) True trnat-ugu-34
LOC110527476 mRNA upstream 117155 20942937 ~ 20947259 (-) False LOC110527476
XM_036982898.1 mRNA upstream 126195 20951977 ~ 21021194 (-) False LOC110527478
XM_036982900.1 mRNA upstream 126195 20951977 ~ 21021194 (-) False LOC110527478
TU666686 other downstream 2459 20772867 ~ 20778065 (-) True otos2
TU665792 other downstream 530539 20215649 ~ 20249985 (-) True G583661
TU663175 other downstream 2545486 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 2737144 18042927 ~ 18043380 (-) True G581089
TU662381 other downstream 3379988 17397857 ~ 17400536 (-) True G580487
TU666669 other upstream 12706 20838488 ~ 20839336 (-) False LOC110527470
TU667558 other upstream 595672 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 691613 21517395 ~ 21518873 (-) True LOC110527499
TU668281 other upstream 1267030 22092812 ~ 22094339 (-) True LOC110527506
TU668853 other upstream 1637426 22463208 ~ 22470518 (-) False G586414

Expression Profile