RNA id: XM_021608752.2


Basic Information

Item Value
RNA id XM_021608752.2
length 714
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110527470
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20838415 ~ 20839399 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGGCATTACTTTTAATGACGACATGATGTGCGACTGCGCAGAGATGGTACGTCACACTTTCACTTAACAGAGTAATGtcatcaactagctagctagctgggtaCGAATTAAATTATTTTACTCTAATAATGTCGGTCTATCACGACGAAGTTGAGATCGAGGACTTTGAATATGACGAGGATGAAGAGACATACTATTTTCCCTGCCCATGTGGCGACAGATTTGCCATAACCAAAGAGGATTTGGAAAATGGTGAAGAAGTAGCGACGTGTCCGAGCTGCTCGCTCATTGTTAAAGTAATCTACGACAAGCAGGAATTTATGTCTGGGGAGATAATCGAAGCACCAATTACAGAGACCAGATTGAAACTGGCTCAGTCCTCCTGACAGCGATGACACACCTCTTCAGTTTCTCATCTCCCATCAGTAAAAGTGGACCCTGTTGCATTTGTATGTGCTCCCACACAACACAAAGGCACACTATGAACGATATGCTTCACTGGTGAGGTCTGGGATGGAGGATTCTCAGCATTCATTCACAAGTTCCTGGCATTGATTTTGCAGAGTTACATAAAACGACCCAAACTACTACCATTTGCACAACGTATTTAAATAAATCCTTTATTCTTTTAAGTCTTtcaatccttttttttttttataaacatgTTATGCATTTTTGTTGATTCCTCAAGATTAAATCTGGATGAAGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU666709 lncRNA downstream 32473 20805733 ~ 20805942 (-) True G584500
TU666699 lncRNA downstream 45310 20792872 ~ 20793105 (-) True G584490
TU666696 lncRNA downstream 50705 20787415 ~ 20787710 (-) True G584487
TU666692 lncRNA downstream 54952 20783206 ~ 20783463 (-) True G584483
TU666690 lncRNA downstream 59996 20778213 ~ 20778419 (-) True G584481
TU666710 lncRNA upstream 32469 20871868 ~ 20873911 (-) True G584501
TU666763 lncRNA upstream 34911 20874310 ~ 20874570 (-) True G584542
TU666783 lncRNA upstream 53123 20892522 ~ 20893678 (-) True G584555
TU666730 lncRNA upstream 103524 20942923 ~ 20943944 (-) False LOC110527476
TU666731 lncRNA upstream 104040 20943439 ~ 20945214 (-) False LOC110527476
XM_021608749.2 mRNA downstream 1060 20780524 ~ 20837355 (-) True LOC110527469
XM_021608747.2 mRNA downstream 1062 20780524 ~ 20837353 (-) False LOC110527469
XM_021608750.2 mRNA downstream 12633 20780524 ~ 20825782 (-) False LOC110527469
XM_021608751.2 mRNA downstream 51225 20780524 ~ 20787190 (-) False LOC110527469
XM_021608745.2 mRNA downstream 60362 20773154 ~ 20778053 (-) False otos2
trnat-ugu-34 mRNA upstream 91709 20931108 ~ 20931180 (-) True trnat-ugu-34
LOC110527476 mRNA upstream 103538 20942937 ~ 20947259 (-) False LOC110527476
XM_036982898.1 mRNA upstream 112578 20951977 ~ 21021194 (-) False LOC110527478
XM_036982900.1 mRNA upstream 112578 20951977 ~ 21021194 (-) False LOC110527478
XM_036982903.1 mRNA upstream 112578 20951977 ~ 21021194 (-) False LOC110527478
TU666686 other downstream 60350 20772867 ~ 20778065 (-) True otos2
TU665792 other downstream 588430 20215649 ~ 20249985 (-) True G583661
TU663175 other downstream 2603377 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 2795035 18042927 ~ 18043380 (-) True G581089
TU662381 other downstream 3437879 17397857 ~ 17400536 (-) True G580487
TU667558 other upstream 582055 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 677996 21517395 ~ 21518873 (-) True LOC110527499
TU668281 other upstream 1253413 22092812 ~ 22094339 (-) True LOC110527506
TU668853 other upstream 1623809 22463208 ~ 22470518 (-) False G586414
TU668953 other upstream 1770762 22610161 ~ 22620116 (-) True LOC110527522

Expression Profile