RNA id: XM_036982881.1


Basic Information

Item Value
RNA id XM_036982881.1
length 6813
RNA type mRNA
GC content 0.57
exon number 29
gene id LOC110527473
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20893808 ~ 20941725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCAGGATGGATCACACAGCTCCGCTCGTGCAATCAACATTCCTATAGCTATGGAGGGAAATGCGTTGTTTTGAAGAAACGTCGACGAACTAAACTTGACTCTTCTTTTTTGAACAGGTTTCATTCCAGACCACTGTGCCTGATGAGGAACTCCCTGTAATCAGTTTAACATGTTCAAAGCAGTATTTGGGAGGAATaggaaagaagagaagaggagcaggagggatCCAGCCGTAGTTGCTGATTACCACAGCCACAGTATCCAACGAAGGGGTGCTGGTGCTTGGGTGACCCACTACCAGGAGCCTAGCCGTGcccaccacccccacccctcaAGGGGCAGGCCGAGGGGGAAGCTGGCTAAGGGGGAGTCCATCTCCCTGCCTTCCTCACCCCTGGTCCATCGCCAGTCCTACATAATGCCCTCAGATATGGGCATCAAGTCCCCAGGTCTGTACAGGAAGCTGGAGTATGTGGAGAGTCCTTATTTTCCTGGAGACGCGTTCGCTTTCACTCTAAACAATAGCAAGACTGCCCAGAGAGAGCTGCACGCGGAGCTCCAGCccagctcctcctccttctcaaCCCAGGAACTGATGACCAGGCTGGGCTTCTTACTGGGAGAAGGGACCCCAGCCTCGCCTAGCACCCCCatggaggactggagggaaaAGAAGtGTAATGTCTCTGGCCAGGCGGTGAGCCCATGCTCCACATTGACCTGCAGCACTACGTCTCCATGCTCAGACAGCCCCTGCTCCACCATGGGTAGTAGCAGTACCGGGGGGCCCTGTCTCCCCAATCCCAGCCCAGGTGGGACCCTCCTCCGCCCCAGTCCCTGCCGGAGCCCAAACTCCACTCTTGAGAGCCAGGATAGCGGAATCATAGCTACCATCACCAGCTCTTCTGAGAATGAGGACCGCGGCGGTTCCACTCTGGACCTGGGCAAAGATGGCAGCCAGAGGGCCGCTGGGCATGGCGGGCACAGAGGCGACTACTGCCCTTACGTCGCCAAGGACGACCTGCCAGGGCCCAGCGAGGCCCCGCCCAGGTCTGAAGTCACCATCCCAGGGGAACCCAGAACTCCGCCCCCAGCCAAGAGGCCCCTCCCACAACGCCACACGTACAGCACTTCTTCCCTTGTGATGCCACGCCCTAACTCTGTGGCAGCCACTAGTTCCACGAAGCTGGAGGATCTGAGCTCCCTGGAGGATCAACAGAGTGCTGCTCCCCAGCGAAGCTCCGTCAAACAGCCCTGGAACAGCACAGGGGGAAGGGACGCCAACGCGCGCTTCGCTCCCTTCAAATCTGGCGACATCATGCTGAAGCCACTGTTGTTCGAGGTCCCCGCCGTCGCCATGGACGCACCGTTCCAAGGCCGTGATTGGCTGTTCCATCGGCTAGAGGAGGTCCTAAGGAAGAGTGACACCTGCGAGGGCCGTGGGGCCGTTATCGTGGGTGATGTGGGCTTCGGCAAGACGGCCGTTGTCTCGCGGCTGGTGGCTCTCAGCTGTCATGGAGGTCACATGCAGCAGGTCCCCACCCAGAGCCCCTGCACCTCCCCCAAAATTGGGGATAGGGGGACAGACGGCGCCTCCAAACAGCCCAGCACCCCCACCACAGACCCCCAGCCCAGCGAAACAACCTGCCCCGGGACACCAGAGGCACACCGAGACGAGGCTGTCAAACGCCTGGCCAGCAAGgtgGTGTCCTACCACTTCTGCCAGGCCGACAACACCTACACCTGCCTGGTCCCAGAGTTTGTGCACAGTGTCGCCGCCCTGCTGTCCAGAGCGCCACAGCTCAGCGGCTACAGGGAGCTACTGCTAAAGGAGCATCATATACAGAGCATGCTCAGTCTGCGCTCCTGTGTCCAGGACCCCATCGCTGCCTTCCGCAGGGGAGTCCTGGAGCCCCTGGTCAACCTGCGGAAGGAAAGGAAGATCCCGGAAGAAGACTTCATCCTCCTGGTTGATGGTCTGAACGAGGCAGAGTTCCACAAGCCGGACTACGGAGACACCGTCGCCTCCTTCATCACCAAGATCGTCTCCAAGTTCCCCTCCTGGCTCAAACTGTTGGTCTCCGTCAGGACCTGCCTACTGGAGATCACCGCCCtcctacccttctccagactctCACTGGACGACTTCCCAGAGAGCAGCGAGATCGGCGGGGACCTTAGCGACTACATCCAACACCGGGTCATCGTCAGCCCCGAGATTGCCGCCAACGTCACCACGCCCAACGGCACCGTCCCCGACCCCCTCCTCCTCAGCAAGTTCAACACCCACCTGGCCTCTCGCAGCCAGGGCTCCTTCCTCTACCTAAAACTGACCCTGGACCTGTTCCAGAGCGCCCATCTGGTTCTCAAGGGAGGCAACTACATGGTAGTGCCCGTCTCTCTGGCTGAGGTGTACCTGCTGCAGTGCCGTGCGGGGTTCGAAGGGGACCGAGCCTTCGAGCGGGTGCTGCCCGTACTCAACGTGGTGCTGGCCTCGTTACACCCGCTGCCGGACGAGCAGCTGTTCCGGGCGCTGAACGCTGGGGGTGTGAGAGGAGAGATGTCCTGGGAGGACTTCCAACAACGCCTGGAGACTCTGGCCTCCGTCCTGGTGAGACGCAGGGACGGCACCCGCATGCTCTTCCACCCCTCCTTTCGAGAGTGGCTCGTGTGGAGGGCGGACGGAGAGAGCACCGACTTCCTCTGTGACCCCAGGAGTGGCCATGCTCTGTTGGCTTTCATGTTCTCCAGACAGGAGAGCAAGCTGAACCGGCAGCAGACCATGGAGCTGGGACATCATATCCTGAAGGCACACATCTTCAAGggtcACAGTAAGAGGACAGGTGTGTCCTCCAGTGTTCTGCAGGCTCTGTGGGTGAGCTGTAGCACCGACAGCCTCTCTGCCGCCCTGGCCTCCCTCAGAAATCTCTACACACCCAACGTCAAGGTGAGTCGTCTACTAATGCTGGGCGGGGCGAGTGTGAGCGGGCGTTCAGAGGTGCTTGGCCGATCCCCTGTGCTGGGTGTGCACGCCCACCTGGGTCACCTTGAAATGGTGTCCCTGCTGCTGGAGCTGGGGGCGCCCGTAGACGGCGCCTCGGACAGCGACATGACCCCCCTCTGTCTGGCCGCCGCAGCAGGACACACAGGACTGGTCAGCCTGCTCTGTAAGAAAGGAGCCAAGGTGGGCCATGTTGATAAGAGTGGTCAGTGTGCCCTGGTCCATGCTGGGTTGAGGGGCCACCCAGACATTATCCACTACCTGCTGAACCAGGACTGGGGCCCCACAGAGGCCCCTGAGGGCCAACAGCAGCACGGTGTGAAGAGCAGTGTGAAGGGCCAGGCCTTACAACAGGCCCTGACGGCCGCCTGCAGCATGGGACAAACTCACGTTGCGAAGAGCTTACTGGAGCTGAAAGATGACGATTTGGCTGTGCAGATAGACGCTCCCGACACACTCTGGGGAGAGACGGctctgagTGCGGCTGCAGGCCGGGGCAGGACAGAGACGTGTGTTTTCCTGCTGGAGAGGGGTGCAGGGGCGGAGCAGCCCAACCGGAGGGGGGTGGTCCCAATCTTCAGCTGCATCAGGCATGGACACCCCCAGgtAGCAGAGCTGTTGCTGCAGAGAGGTGTGGACATTAACACCATCGATAAGCAGGGCCGCAGTCTGCTGATGGTGGCAGCCAGCGAGGGCCACCTCAGCACTGCTGACTTCCTGCTGACAAAGGGCGCATCTTTAGCCTCCGTGGACAAGGAGGGCCAGACAGCTCTGAGCTGGGCGTGTCTGAAGGGTCAGAAGGGCGTGGTGGAGTGCCTGGTGGAGAAGGGGGCAGAGATAGATCACCCTGACAGGAACGGACGTACCCCTCTCCACCTGGCAGCGTTCAACGGTGATGCAGAGATGGTTCAGTACCTGGTGGAGAAGGGTGCGGTGGTGGAGCATGTGGACCACAGTGGGGTGAGGCCTCTGGAGAGGGCTGTGGGCTGTAGAAACGCTGCTGTGGTGGTGACCCTACTGAAGAAAGGGGCCAAGCTGGGCTACAGAACATCCCCTTATGATCGATCAGGTCATGCTACGTGGGCGATGGCCACATCCAAACCAGACGTGCTCCTCATCCTCCTACAGAAACTCATGGAGGAGGGCAACCTGCTGTATAAGaagGGGAGGATGAAGGAGGCAGCCCAGAGGTATCAGTACGCCCTGAGGAAGTTCCCCCGAGACGGCTTCGGAGACGAACTGAAGGGCCTGAAAGAGCTCCGTGTCTCCTTGTACCTCAACATGTCACGCTGCCGCAGGAAAACCaatGATTTTGGTATAGCGGAGGAGTTTGCCACCAAAGCCCTGGAACTGAAACCCAAGTCTTATGAGGCGTTCTACACCAGAGCACGAGCCAAGAGGAGCAGCAGGCAGTATGCGGGGGCGCTAGCCGACCTCCATGAGGCGTCTCGGCTCTGCCCCACCAACCGGGAGATCCACCGTCTGCTGACGCGTGTGGAGGACGagtgtcaacaacaacagcagcagcagtcccCCAACACACCACAGGGCCAACAAGCAGCACACAGTCAGACTCCCGATGACCTCACAGAGAGGAGCCAGGACACAGAGAGGAGTTGTGATACACAGAGCCAAGATGAACTAGATGACGATTATgaagagatagggggagaggaagagcccTCACAGAACCCGTATGGACCCAACAGGCCCAATAACCCCTATGGACCCAACAGGGCTCTCCCACCAGTACCAGGCACAGTGGGCTTAGCTCCCCTGGACCCCAGGCCTGGTTCCCCTCTGGATGGGTCCACACAGACCAACCTGTCTCTGGACAAGCAGGGCCCTGTCCTGCAGGGTCCTAGACAGAACCAAAGCATGAAGAccaagcagcagcagcactgtAACTCCCTGCAGGTAGGGGGCAGACCAGGGGGCAGGCCTATGTCTCTGTGTGGCCCCTCTAGCCCCCTGCCAGGCAGACACATCTCCACCTCCCTGAGACCCAGCCCTGGCCTGGGCATCGACATCAGCCCTCTGCCCTCCTCTTCCACAGACCACCACCCGGGGCTCACCCCtgtcaaccaccaccacctctcctcctcctcatctgtcCAGCCATTCCAGGGCCACTCCTCCAGCCTGGCTAGGGGAACAGAAAGGCTCTCAGCCCACCCCGGCACCACGTTGGACGGGCATGCTGGGTCCCTCACTCCTGGGGTTggtaaggaggtaaggagggagggtTCTGGGGGGTCGGCTGGCCCCGGTCTGCGTTCTGGTGGTCAAACAGGCAGTATAAAGGCCTCCAGCTCTAGCAGTAGCCTAGCCTCTAGCGGGACCCTGTCAGACAGCAGCAGGACCCAGGCTACTCAGGGGCCCGACGTGCCTCGCCCCAAACCGGCTAAACCAGAGCTCAAGCCTCGGCCATTCATGGGGGTGAAGGACAAGGCAGTGCGTGTCCAGGGGCAGCCCCCACCTGGACTGGGCTGGCAAGGTCAGCCTCACTCCCAGCCACTTTCCCCTGAAGGTCTAGAGAACCAGAGACACAGCATGGCCCCTACGGACAACATCCAGGGATTGAATAATGAGTTCAAGCGGAGGTCCTCCTACGCTGAGCCACTGCAGAGCCAGGCTCCCCTCCAGGTGCTCAACGGGGCCCAGGCTCAAACCCAGCACCTGGCCCAACAGGCTCAGGCCCAGCACCTGGCCCAACAGGCTCAGGCCAAGGCCCGGGAGTTTGGAGACAGGTTCTACCACAGGGAGCCAAGACCAGGTCCAGCTGCAGGCCTACATCACTCCTCCCAGTTCCCAGACGGGAACCACCGGCAGGCAGGGTTCACCAGAGATAACCCAGCCATCCTACCCATCAAACCTAAACGCTCCTTTATAGAATCCAACGTCTGAACTGGCCATGTTCATTCAAGCACAAACACCATAATACATTTCTCTGTATTCCAGAGAAACGGTGGCAAGGGAAGGGTTTCAAAGTTTCTTTCCTTAATCTGACTCTTGTAAAGTGACAGTGTATGTGATGCACTGCGTTTAGACTTAAGCATCCATTTGAGGCTTTTGTGCTTTTTGCGTAAGCATGCCTAGAGCAACACCAGTAAGCAAACAACACAGTGCACATAATCACACCTGGGAAACACCATATAGTACCAGTCCAATAGCTGAACAGTAGCATAGCATCCTACTATGGACCATTATAACAACGTAACTATGATGTAGTTTGtaaagaacaacagtaaagggttTCGGATGCTAATGGACGAAAAGCCATTTGATTAAACGATTGGCTAATGATCGGCACGCATATCGAATAGGGATGTTTATACATTAGATTTGTACGTGTTCTATTTATAGATGATATAAGTGGTGATCGCCTTTGTCAGTATACCAGAGCCCTCGATGCAAAGTGCTTCACAATGCATGGAGGGTTTCTATACCTTTGTACATTTTATAAATAATTATATTTAACTAAGTGTACATATAATCCTACGGACGTTGTTGTAACTGCTTGTTGTTGCGGTCGATGTTAATGTATTTACTGTGCCGACGGCTTGGTCAGTTGTAAGAACAATATATTTGATATAGTTATTTTTGCACAGCTAGAGAAATATTTGAAAAGTTGATGGGATATATTTCGTTTGTGTGCACAACATTAACAGTTTACAGTAAAGGTACAGAATAGCTTGTAagggtattattattattatctttgaTTTGTGAGCTATGCGACACATTATACAGACTATGCTCAAGCACTACCACCATAATCATGGGGAAATAAAATCTCTTTGGAAAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU666502 lncRNA upstream 39104 20821799 ~ 20854705 (+) True G584323
TU666516 lncRNA upstream 56231 20836435 ~ 20837578 (+) False G584335
TU666518 lncRNA upstream 56231 20836750 ~ 20837578 (+) True G584335
TU666499 lncRNA upstream 78667 20814926 ~ 20815142 (+) True G584320
TU666492 lncRNA upstream 90333 20803217 ~ 20803476 (+) True G584313
TU666862 lncRNA downstream 89734 21031459 ~ 21031684 (+) True G584616
TU666863 lncRNA downstream 91617 21033342 ~ 21033590 (+) True G584617
TU666896 lncRNA downstream 141787 21083512 ~ 21083810 (+) True G584644
TU666897 lncRNA downstream 142736 21084461 ~ 21085015 (+) True G584645
TU666923 lncRNA downstream 186179 21127904 ~ 21128197 (+) True G584671
XM_036982890.1 mRNA upstream 130 20874252 ~ 20893679 (+) False LOC110528809
XM_036982891.1 mRNA upstream 130 20874257 ~ 20893679 (+) False LOC110528809
XM_036982888.1 mRNA upstream 130 20874258 ~ 20893679 (+) False LOC110528809
XM_036982889.1 mRNA upstream 130 20874259 ~ 20893679 (+) True LOC110528809
XM_021608757.2 mRNA upstream 19894 20869463 ~ 20873915 (+) True LOC110527474
XM_021608763.2 mRNA downstream 92145 21033870 ~ 21044932 (+) True LOC110527479
XM_036982929.1 mRNA downstream 235258 21176983 ~ 21183344 (+) True LOC110527484
XM_036981861.1 mRNA downstream 304633 21246358 ~ 21249349 (+) False sumo1
NM_001160594.1 mRNA downstream 304658 21246383 ~ 21249339 (+) True sumo1
XM_036982935.1 mRNA downstream 373281 21315006 ~ 21337432 (+) False LOC110527488
TU665732 other upstream 654012 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 872082 20017855 ~ 20021727 (+) False LOC110528807
TU664011 other upstream 1916810 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 2400900 18492227 ~ 18492909 (+) True G580997
TU662252 other upstream 3076961 17813342 ~ 17816848 (+) True G580365
TU666895 other downstream 139103 21080828 ~ 21082615 (+) True G584643
TU667948 other downstream 1011304 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 1414858 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 1744764 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 1759469 22701194 ~ 22703821 (+) True LOC110527523

Expression Profile