RNA id: TU666730


Basic Information

Item Value
RNA id TU666730
length 871
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110527476
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20942923 ~ 20949096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCCTGatgagttcctctgtccaatCACCAGAAAGCTGATGAGGGACCCTGTTATCGCTGAAGATGGGTACTCCTATGAGAGAGAAGCGATTTGAGAGCTGGATCACAACCAAGAATCGTTCCAGCCCCATGACCAACCTGCCCTTATGGACAACACATCTGATCCCAAACCGAACCCTGAAGATGGCTATTGGACGCTGGAGGACCAGCCAGTGAGAGAGGGATGCAAGCGTGTCTCTACATCCCTTTTCAATCCAAAGATGGTCTATCCCTCAGTTAACTTCTGACCAAAAGTAGGCTTATAGTACATAAAGCTATAAATGATGTTTTCAGGTTGACCACACAGAGCTTCGATTCAACCCCTCACTGTGTCTGCACTCACACACATCTGTTGGGATGAAACTACTTTTATAATGTAAATATTTATAGCTGATGAGACATtctaatatatataatatatatatatatatatatatattaaactcaATATTAAACTCATGCATGTTGACCATGTTCTACTCTGCTGCTTTAGCTCAAACCATTTCATTGTTGATGatagtgtattcggaaagtattcagaccccttgactttttccacattttatgttacagccttattcgttaaattaaatgtttttttttccccctcctcaatctacacacaataccccataatgacaagcaaaaacaggttagaCATTTTTCAAATATATAAGAAAATAAAAACCTATCacatttacaagtattcagacctttttacttttgttgaagtacctttggcagcaattacagtctcgagtcttcttgggtatgaaactACAAGCtctgcacacctgtatttgtggagtttctgccattcttctctgcaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU666783 lncRNA downstream 49245 20892522 ~ 20893678 (-) True G584555
TU666763 lncRNA downstream 68353 20874310 ~ 20874570 (-) True G584542
TU666710 lncRNA downstream 69012 20871868 ~ 20873911 (-) True G584501
TU666670 lncRNA downstream 103587 20838488 ~ 20839336 (-) True LOC110527470
TU666709 lncRNA downstream 136981 20805733 ~ 20805942 (-) True G584500
TU666733 lncRNA upstream 2479 20946423 ~ 20949096 (-) False LOC110527476
TU666734 lncRNA upstream 2479 20946423 ~ 20949096 (-) False LOC110527476
TU666736 lncRNA upstream 2479 20946423 ~ 20949096 (-) False LOC110527476
TU666737 lncRNA upstream 2479 20946423 ~ 20949096 (-) False LOC110527476
TU666739 lncRNA upstream 2479 20946423 ~ 20949096 (-) True LOC110527476
trnat-ugu-34 mRNA downstream 11743 20931108 ~ 20931180 (-) True trnat-ugu-34
XM_021608752.2 mRNA downstream 103524 20838415 ~ 20839399 (-) False LOC110527470
XM_021608749.2 mRNA downstream 105568 20780524 ~ 20837355 (-) True LOC110527469
XM_021608747.2 mRNA downstream 105570 20780524 ~ 20837353 (-) False LOC110527469
XM_021608750.2 mRNA downstream 117141 20780524 ~ 20825782 (-) False LOC110527469
XM_036982898.1 mRNA upstream 8033 20951977 ~ 21021194 (-) False LOC110527478
XM_036982900.1 mRNA upstream 8033 20951977 ~ 21021194 (-) False LOC110527478
XM_036982903.1 mRNA upstream 8033 20951977 ~ 21021194 (-) False LOC110527478
XM_036982904.1 mRNA upstream 8033 20951977 ~ 21021194 (-) False LOC110527478
XM_036982892.1 mRNA upstream 8033 20951977 ~ 21021195 (-) False LOC110527478
TU666669 other downstream 103587 20838488 ~ 20839336 (-) False LOC110527470
TU666686 other downstream 164858 20772867 ~ 20778065 (-) True otos2
TU665792 other downstream 692938 20215649 ~ 20249985 (-) True G583661
TU663175 other downstream 2707885 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 2899543 18042927 ~ 18043380 (-) True G581089
TU667558 other upstream 477510 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 573451 21517395 ~ 21518873 (-) True LOC110527499
TU668281 other upstream 1148868 22092812 ~ 22094339 (-) True LOC110527506
TU668853 other upstream 1519264 22463208 ~ 22470518 (-) False G586414
TU668953 other upstream 1666217 22610161 ~ 22620116 (-) True LOC110527522

Expression Profile