RNA id: XM_036982898.1


Basic Information

Item Value
RNA id XM_036982898.1
length 8915
RNA type mRNA
GC content 0.56
exon number 36
gene id LOC110527478
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 20951977 ~ 21021196 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTGAGAAGAGTCTCCTTCAATCTGCTGTtagtaactaacacacacactcactcacaccgaGACTCAATTACTGCCCAATTCCTTTCTTTATCATCTGTTACCGGCCTCTTTCAAAACGAAATCGAAAAGAGACTAGAAGGCTACACGAAGTATTACTTGAAACAAAATCCCGTTGGAAATAAGTATTAGTGTCGAAACTAAAAGgtGTTAGAGCAGTGATGTCACAGAGCTGAAGACATTTCCTGTCAATATGGAGTCTGGAGAGCGGCTGGCCTCCCCCGCGCCCCCCACCCTGCCCACCGCTCGCACCTCCTCCcctgctgcctcctcctcctcttcctcctcctcgtcctccccgGCTCCCCACTCCAAGAGCAGTCTGGCCCCCAGCCCTGCAGCCTCACTGGGATCTACCCTCAGCACCTCTGGTCGTTTGTATGGGGCGATGAGCGACCAGCAGCCCTACACGTTGTCAAGTGCCTTCCCCCTGGTCAGCCACCCAGCCTTCGGCCTGTACACCACCAGCTCAGGACGCCCAGAGTTTGGAGGCCTGGGGTCGTTGGGGTCCCTGGGTTCTCTGGGGTCCTTGGGGATGTCTGCTGCCCTGGCCGCACACCCCCAGCTGGGGGCTCTGACAGAATGGTGGCGAGCAGCAGAGGCCCACAGTAGGGGGGCAGCAGCCTTCCTCCCTCCGTTCCTGGGCCTCCCTACAATGTTCACCCCCCACATCCAGCAGAACCACAGCCCCCTGCAAGCCCCCTCCAGGAACCCCAGCAAAAACGGACAGATCCCCAAAGGGGTGAACGGGGCAGTGAACGGAAGTGGGGTCTCCTCCCCAACCATGCAGGGGTCTTACTCCATGAACGCGTCCCCATCTCTGGGTGCCTCCCAGTCTGTTAAGGGCCCCAAGGCCAGGGGCCCCAGGAGCAGCCCTCACAGCCAGAGCCACACAGCAGAGCTACAGCTGGAGAAAGTACCCCACAAACCTAAAGACCAGAAGCCCAGTAAAAAGCCAGCAGAGGTCGCCGGGGTCAGTGACAGCGAATCAGGCTCCTCCTCGGACAGCTCCAGCGACGGAGTCATCAGCAGCGACCTGGAGGACCTCGGAGGGGAAGAGGACGACGACGATGATGATGACGACGATGATGAAGACGAGGAAGAGGATGGAAAGTGTGAGGTGTGGAACTCTGAGAAGGAGAAGGCGAGGCGGGCGAAGAAGAAAATGAAGatCGGGACACTAAGCCTGGGCATGAAGGAGGCCCGAGACAAGAGGAACAGCCTGCCCCACAGCCTACCCTCCGACCCCCCCACCCTGGTCCCCTCACAGCACTGCCCCTCTCCTCCTACCCTGTCCCAGAGCTCCCCCCTGTCCCTCCAGACCTCCCGGCCCAGGGAGGAGGGTCTCCAGCAGCACCTCAGTGTCATCCAGTCCACGGGCCTAGCAGCCAGCTCCATGCCCCTGGCTCTCCTCACCCAACCCCGCAGGGAAACCTCCCCATCACCCCTGTCTGCCTCTACAATCCCCCTCATCACCTCCCCCAAAGGACGCACCACATCCTCCCCCAAGCCGCCCAAGCTCCTGCCCTCCTCGCCGCAGAACCTGCCCCTGTCCCTCTGCACCTCCCTGTCCCGCTCGGTACCCCTGTCCTCCTCGCCTcaatccttccctctcctcacgtCGCCCATAGCCAACTCCCAGCAGACCAAGCCTCTGAAGACACCTGGCAGTGGGAAGGCCAGTAAGAGGAAGCTGCTGGAGGAATCACTCTCTCAAATCAACGAATTCAGGCTCAAACAGTCTTTACTCTCGCAAGGCCAGATGTTCCCGGCGGCGCAGCCCAAGAAGCAGCAGGGTCACAGAACCTCTCGGAAGGCTGCTGGGGTGACGTCATCCTCCTTGCCGCCCCCCAAGCTGTCCTCCTCGGAGAGTCCGGGTGGCGGTGGCAGAAGCACCAAGTTGCCCCctgctctcctcccccctccctcccagaaCAACCACTCCAACCTCTTCCTGTCCAGCGCTCTCCTGGGCCTGGCTGCCCACCCCAACGGAGTCATCCAAAGCACCACCGCTCAGGACGCACCGCTGGCCCTTATCACCAAGCCCCGCAAGGACTCCAACAAGGACCTCTCTGGGGCAGGGGCGTCCCTCTCGCTGCCCGTCAACCTCAGCACCGGCGGAAGGGCCCACTTGGCCTCCTCACAGGGCCCCCCGGCGAGGCCCGCTACCTCACCCTCACCGGCCACGGCCCGGGGCCCCAGGAAGATCAAGGCCCCTAAGCTCCAGGCCCCTAACCTCCAGGTTCAGGCCCATGCTCTGGCCCCCATGGCAGCCTGGAAGGGCCTCTCTCAGAGTCACCTAGTGCAGTCTCTGGTGGACCTGTTCAGAGGGGCTGAGGCCGGCCTCCCAGGTCTCCCCGGTCTCCCTAGCAGCAAGGACTCGGATGACTCTGTTGAGGatgacgacgacgacgacgatgatgatgatctggatgatttggaggatgatgaggaggactCGGATGACAGCTTGTCAGATTCTGACAGTAACTCGGAAAGCGACGCAGACGTCTCCGGTGGCAAACTGAAGGACCCGAAGCTGAAGCTGCCATCTTCAGGCTCCGCCTCCAAGAGGGAGAAGACACCACTCAAGCTAACCAAAGGCCACGCCTCCTTACTGAGCAACTCAACCAATCACACAGCCACCAGCTGCTCCCCGCTCAACCTGCAGGTCATCAAGACGCCCAACATCGTCACCAGCTCCAGTGCCTTGGCCTATCAcagctctccttcctcctcctactCCCTGGCCATGCCCCCAGgtgcagGGAAAAGAAAGAGGGTGATGGATGAGCAGGAGTTGAGGATACCTCTGGAGTTGGGCTGGCAGAGAGAAACGCGGATCAAGAGCGTGTCTGGGAAGATGCAAGGCGACGTGGCGTACTACGCGCCATGCGGGAAGAAGTTGAGGCAGTACCCAGATGTGATGAAGTATCTATCCAGAAATGGAATAAGTGGCATCACACGCGATAATTTTAGCTTCAGTGCAAAGATAATGGTTGGTGACTTCTATGAAGCCAGAGAAGGACCCCAGGGTCTGCAGTGGAGCCTGCTGAAGGACGAGGACGTCATCCCTCATATCCTGGCCATGGAGGGCCGGCGGGGACGGCCCCCCAACTCAGAGCGCCAGCGCGTGGCCGAGGGGGGAAAGGGCTCCCGGAGGAGGAAGGGCCGGCCGTCCAACGTGGGAGAGGTTCTGGGGTTGGGGGCAGAGGTGCCTAGCCCCAGCGAGGCCAAACTCTTACGCAAACTGGAGGCCCAAGAGATAGCCAGGCAGGCGGCCCAGATGAAGATGATGAGGAAGCTGGAGAAGCAGGCCATGGCCAGGGCAGCCAAAGAGGCCAGGAAGCAACAAGCCATCATGGCGGCCGAGGAAAGGAGGAAGCAGAAGGAGCAAATGAAGATCATCAAGCAGCAGGAGAAGATCAAGCGTATTCAGCAGATCAGGTTGGAGAAGGAGATGAGGGCACAGCAGATTCTGGAGGCTAAAcggagaaagaaagaagaggtTGCGAATGCCAAAATTATGGAGGCAGAGAAACGAATAAAGGAGAAAGAAATGCGAAGACAGCACGCAGTCATTTTGAAGCACCAGGAGTTGGAGAGGCATAGACTAGATATGgagagggagaggagacggcAACACGGGATGCTCATGAAGGCGGTGGAGGCTCGCAAGAAAGCAGAGGAGCGCGAGCGCTTGCGGCAGGAAAAGAGGGATGAGAAACGCCTGAACAAGGAGCGGAAATTGGAACTGAGGAGGCTGGAACTGGAGATTGCCAGGGAGCTGAAGAAGCCAAATGAAGACATGTGTCTGGCCGATCATAAGCCTCTTCCAGAGTTTTCCAGAATCCCTGGCCTGATCTTGCCGGGGGGTGCGGTGTCTGACTGCCTGATGCTGATGCAGTTCCTACGCGGCTTTGGGAAGGTGCTGGGCTTCGATGTGGGGGTGGACGTACCCACCCTGGGcatgctgcaggagggcctgctCAACGTGGGAGACAGCATGGGACACGTCCAGGACCTGCTGGTCAGACTGCTCTCCCTGGCTGTGTGTGACCCTGGACTGCCCCCTGGACATAAGacCAAGACCATGCTGGGGGACCATCTGACCAACGTGGGCATCAACCGGGACAATGTGTCGGAGGTGCTGCAGATGTACATGGGGGCCCATTGCGGGCAGACTGACCTGGCTGAGCTGGCCCTCAGCCTGAAGACCAAGGCCTTCCAGGCTCACACCCCCGCCCAGAAGGCCTCCATACTAGGCTTCCTGGCCAATGAGCTGGCCTGCAGCAAGAGTGTCGTCAGTGAGATCGACAAGAACCTTGATCACATGACCAACATGAGGAAGGACAAGTGGCTGATCGAGGGCAAACTCAAAAagttgagGACCATCCATGCCAAACGGACCGGGAAGAGAGATGCCAGCACGGGAGGGGAGGAGGCCCAGCCCCTGGGTACGCCCTCCTCTGGCCTCAAACGCAAGAGAAAAGCCGGAGCAGAAAGCGACGACGACGATGATGAAGACGAAGACAGCGACGACCTGGCCGATGAAGatgacgaggaagaggaggaggagatgaagaagGGGAAGAAAGTGGAAACGTGTGACGAGGACGATGGGGACCAATCAACTAGTGTGGAGGAGCtggagaaacagatagagaagCTAGCCAAGCAACAGCACCAGGTGAGGAGGAAGTTGTTTGAGGCGTCCCACTCCCTGCGCTCCATGATGTACGGCCAGGACCGGTACCGCCGGCGCTACTGGGTTTTGCCCCACTGCGGAGGGGTCTTCATCGAGGCCATGGAGAGCGGTGAAGCTGCGGGGGAGctggagaacgagagggagaggaggagggtggcagCAGGGGAGGTGCACATCAAGGAGGAGCCgcaggaggaggaggtgcagAAGAAGAAACCTGGGGGCGTcggcggggaggagaggagtgtctACACCCCCGTGGGgtcagaggaagggaaggaggagaaaaaaggttctcccAATCTTTTCCTCTTGCAGTCAGCCTCTCTCTCCAAACTGACCACGCTCCTCCACGTCGCTAAGGAAGTTGCCAAGGCAACCCGCGAAGCTGAGGCAGACCCCCATCCCAAATACAACGGCAGCCCCACTCCACTCTCTGTTACCACgacaacaataacaacaccaccatcctATCCCGCCCACAACGCCTCTCTACCCGCCTTACCTACAAGCCCCTGTGCGTCGACGGCACCCAATCTGCCATGCGAGGAGGCCAAACCCGGCTACCCCTCCTCCACCACGTCTCCCTCCTCGTTCTCCTCCCTCCTGAGCCCCCCACCCCAGCTTTTCAGCCCTATGAAGACCtccaccctaatccctaaccctccACAGCTCCAGTACCTCCCCAGTGACCAGCTCCTCAGGGTCCTGACAGAGAGGAGCGGTCACTGGTTCACCCTGCTCCCCCGCTCCCCCTGTGACGACACCTCCCtcaccacctctccctccccaggGCCCGGCCCTCTCCAGTCCTCCCCGCTGCCCTCCTCCAGCCTCACGCGGCCCAGGTCTCCCCCGGCTTCCCCCGCCTTGCCTCTCACCCCCTCGGCAGCGTCGGCCTCAGCCAGCCCCCACCATCCAGCTGGCTTCATCAACTACCCTCTGTCAGTCCTGCAGGGTAAGGCTGGCGGGTCATTGCTGGGTCTCTCAGCGTTCTGCGGTGGCTGGCCCAGTGGAATGCTGAGCCCCAGCCAGCTGCCCTTCTGCAACAGCCCCCTGCCAGGCCACTCAGGCCTCAGCTCCGTGGAGGGCAGTGCCAACGCACCGCCCAGCGTCTCCAGCAAGAGCGAGTCGCCTGTTCCTTCAGGCGAGAAGCTCTCATCCACGGTGCCCTCTCCCGCCATGATGGAGGTGCCCAAGCACTCGGATCACCCCACACCACGGCCCATCCCCGAGGagaTGCTGTCAGGCTGGTGGCGGGTGTCAGACATTGAGGAGCTGCGCTCCCTGGTGGAGTCCCTCCACAGCCGGGGAGTCAGAGAGAAGGTCCTGCACCGACAGGTGCACAAATACATGGAGCTCATCCCACAGGTCTGCACCAAGCACCGAGACGCGGCCATGATAGAGCTGTGTGAGCTGGAGGAGAGCCAGGTGAGTGTGGAGTCAGTGCGGGGGTGGTGTGTGGAGGAGCAGGCCATGGAGATGGACATCGCTGTGCTGCAGCAggtggaggagctggagaggAAGGTCACCACCGCCAGCCTGCAGGTgaagGGCTGGATGTACCCCGAGCCCCAATCAGAGAGGGAAGACCTGGTCTACCACGAGCACAAGCCCCTCCCCAAACACCAACCAGCGGCGGCCGGCGCAGGCGACAAAGACCAACCGGAGGACAAGGCGGACCACAAGGCGGGCGGCGTGGTGCGTCACGCGGACAACCCTCTGGACATAGCGGTGACGCGGCTGGCGGACCTGGAGAGGAACATCGAGAGAAGGTACCTGAGGAGCCCCTTAGGTACCACCATTCAGATCAGGCTGGATAATGTGGGGGCTACCGGTACCGTCACTGTCCCAGCTCCCTCCAGTAGTGCTGACAGGGAAGGGGGCGAGGAGGAGGTGGCCCATGGGATGAAGGTGTGGAGGAAGGCCCTGGGCGACGTCCGCAGTGCCGCCCAGCTGGCCATGTGTCTCCAGCAGCTCCAGAAGTCCATCGCCTGGGAGAGGTCCATCATGAAAGTGTACTGTCAGATCTGCAGGAAGGGTGACAACGAGGACCTGCTCCTGCTGTGTGACGGCTGTGACAAAGGCTGCCACACGTACTGTCACAAACCCAAGATCACCACCATCCCCGAGGGGGACTGGTACTGCCCCGCCTGCATATCCAAGgCGAGCGGCCCGTCTCCCAAGAACAAGAAGCCGCCGAGCAAACCGGTGGCGGGTGGAGGCGGGAAGAAACCCGCCGAGGCCAAGCGGAACGGGAAGCAGGCCGGCAACAGTAACGGTAATGTGGAGGTGTCAGAGGACGACTCGGCGAGCGCCAGCGGCACCCCGAAGAAAGGAGGAGGAGCGAAAGAGCCCCCCAGcaggaagagaaaaggagaggagagcccCGCCCTGTCCCAGGCCCCGCCCACAccccagtcacccagtcaggagagccctgtggtgtgtgtgaagaGAGCCAAGACAGCCAGAGACAACAACAGAGACCTTGGTTTGTGCAGGGTGCTCCTGGCTGAGTTGGAGCGTCACCAGGATGCCTGGCCCTTCCTCAACCCCGTCAACACCAAGGGGATCCCTGGCTACAGGAAGGTCATCAAGAAGCCCATGGACTTCGCCACCATCAGAGAGAAGCTCGTCAGCAGCCAGTATCAGAATCTGGAGACTTTCATTATTGACGTCAACCTGGTTTTTGATAACTGTGAAAAGTTTAATGAAGACAATTCAGACATCGGGCGAGCGGGACACAACATGAGGAAGTTCTTTGATAAGAGATGGACAGAGCTTCTCAATCAAATAAACTAATCCATCAATTTGGGTGTTGTTTTACCGATCATCATCACTGTCTCGAACCAGACCTCAAGTAAAGTTCTATTTGACATTTCATAGCAGAGGCACCACGTTTTGGGAACGACAAGATGATGATGCTGGTCCGTCTGTACTTTGGGACGAACCCGGGGCAGTTAAAGTGAAATGTCAACAGACAGACTTGTAACGCTAGTGTTGCTACAGTACAACAGGGATCCAAACACCCAAAGAGTCCCACACAATGTCAACCGGGTGTCTTAGTGCAATACCATTTCCTGTTCAAGATCATTGCACTGAATCCTCATCCTGCTCAACCACCCAAGATGCATCTGCGGTAGAATACTTTCCACTACTTGTAAATAgacgttttatttttatttaatcgtATTATAGTGaatgtatttaattttttaataATTATTTATGaatcaataaataaaataaaaaaaaggtccACATCATTTTCTATGAAAAGGAAGAATCAGCTCAACTGCTTTGAATCGAAAGGAATGTCTATCTTTGTGTTTGacttttattagatttttttcccAAATATGAAACAAAGCCAAGAAAAAAAATTGCTGTTTACACTGTTCTATGCTTTTGGGCACCAGAGGACTGTAATCATTACGTTAAAACTGTACAACTGCATTTAATTACAAAAATTGCAGAAAAACAGTCAGACAATGGTGatacatgtgtatatactgtttaTTAATGTCAATATTCAAGTCTTGTTTGGAACGAATTGTTTAAAATATCAGATATTGTTTATGCCTTAGAATGATTGTagcattctattctattttaGTGAAAGTGATTAAAAAAACCATTATAAATATTGTttgtacaatatatacatatccTCTGCAAACACTGTGGTATCCTTAATCTTGGTAGTGCCTACCCTTCCAACAGGGGCGTAGGGGATATAATTTttttggtttttccatttttATGATGACATTATTTTTATATAATTTAAATCCAACATGGCCTCCAAAGTCTGACAGTGACACAGTAATCATTCCTCTCCATACAGAAAGAGAAAAACAAACGACGTTTAAGTATTTTTTGGGTCTTTTTTTCCATGAAACATTTCCCCATATCTGCCTTGCCACAGTACAGAGGACGTAAGGCCATTTGTAACCACTGTGTTTGAATCTTGCTGTGTGTCGTGGCCTAATGGAGGCAGCTAGAGTTTTTTGTACCCAAGTCAGAGTACTTGAAGTTACTTTATTTAAGATATTGTGGAAAAAAAGTATCATTCTTTTTGTAGGAGCTTTATTTTTCACTAGTGTGTGGCACGGACCTATTAAAGTATGTTTTTCAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU666733 lncRNA downstream 2881 20946423 ~ 20949096 (-) False LOC110527476
TU666734 lncRNA downstream 2881 20946423 ~ 20949096 (-) False LOC110527476
TU666736 lncRNA downstream 2881 20946423 ~ 20949096 (-) False LOC110527476
TU666737 lncRNA downstream 2881 20946423 ~ 20949096 (-) False LOC110527476
TU666739 lncRNA downstream 2881 20946423 ~ 20949096 (-) True LOC110527476
TU666864 lncRNA upstream 12367 21033561 ~ 21033784 (-) True G584618
TU666925 lncRNA upstream 17112 21038306 ~ 21039785 (-) True G584673
TU666938 lncRNA upstream 59642 21080836 ~ 21082395 (-) True LOC110528811
TU666964 lncRNA upstream 106365 21127559 ~ 21127793 (-) True G584709
TU667434 lncRNA upstream 110266 21131460 ~ 21131659 (-) True G585116
LOC110527476 mRNA downstream 4718 20942937 ~ 20947259 (-) False LOC110527476
trnat-ugu-34 mRNA downstream 20797 20931108 ~ 20931180 (-) True trnat-ugu-34
XM_021608752.2 mRNA downstream 112578 20838415 ~ 20839399 (-) False LOC110527470
XM_021608749.2 mRNA downstream 114622 20780524 ~ 20837355 (-) True LOC110527469
XM_021608747.2 mRNA downstream 114624 20780524 ~ 20837353 (-) False LOC110527469
NM_001195412.1 mRNA upstream 25026 21046220 ~ 21079993 (-) True ly75
XM_036984416.1 mRNA upstream 59604 21080798 ~ 21110934 (-) False LOC110528811
XM_036982911.1 mRNA upstream 89866 21111060 ~ 21125359 (-) False LOC110528812
XM_036982912.1 mRNA upstream 89866 21111060 ~ 21125359 (-) False LOC110528812
XM_036982909.1 mRNA upstream 89866 21111060 ~ 21126890 (-) False LOC110528812
TU666669 other downstream 112641 20838488 ~ 20839336 (-) False LOC110527470
TU666686 other downstream 173912 20772867 ~ 20778065 (-) True otos2
TU665792 other downstream 701992 20215649 ~ 20249985 (-) True G583661
TU663175 other downstream 2716939 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 2908597 18042927 ~ 18043380 (-) True G581089
TU667558 other upstream 400260 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 496201 21517395 ~ 21518873 (-) True LOC110527499
TU668281 other upstream 1071618 22092812 ~ 22094339 (-) True LOC110527506
TU668853 other upstream 1442014 22463208 ~ 22470518 (-) False G586414
TU668953 other upstream 1588967 22610161 ~ 22620116 (-) True LOC110527522

Expression Profile