RNA id: NM_001195412.1


Basic Information

Item Value
RNA id NM_001195412.1
length 6496
RNA type mRNA
GC content 0.51
exon number 35
gene id ly75
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21046220 ~ 21079993 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCGGCTGGCTACTGGAGACGTATGAATCCGAATAGAGAATCCGTGGTATTATAACCATGGATAAAATGACACTTCAAGCAGCAGTTTACCTATGTTTTTTCTTATTATTTTGGGATAAAACTATTTGTTTTGGAAGTTGCGCGTCAACTACATATTCCGGTGACGACACCTTCACCATCCAGCATGTGAGCACAGGAAAGTGCCTGGTAGCTATGTCCACGTCTGGGACTGGAGTTTCCAGGATAGCAGGGGCTAAGTCTGCAGGGTCTGGGTTCAGCGTGACCCTGGGGGAGTGTGACGGCTCCAGGGGGTCCCAGTGGAAGTGGGGGTCCGGCCACCGTCTCTTCCACGTGGGCACGTCCCAGTGCTTGGGTTTGGAGGTGAAGACCAAGGCCCTGTCTCTGTTCAGCTGTGGCGTCATGGAGGCCGTCATGCTGTTGTGGCGCTGCCTGGACGAGGCCATCTATACGGTGTACCAGATGGGCCTCACGGTGACCGACGGGCTGGTCAGTGCCAAGCGCGACTCCTCAGACGCCTGGAGGAGGGATGAGTCGACCAATAATATCTGCCAGCGGCCGATGCGCATTGTCCACACCACCAATGGGACGTCGACCGGGGAGCCCTGTGAGTTTCCCTTCCACTACAACGGCAGCTGGTACCACGAGTGCCTCCCCGACGACCAATCATCTGAACTATACTGGTGTTCCACAACCTCCGACTATGATGCTGACAAAAAGATGGGATATTGTCTAAAACATGAGGAAGGCTGCAAGGCCCTGTTCAATGGCCCCGAGGGGGGACCCTGTTATGAGTTTGTGTCCCAGGTCGCGGTGACATGGCAGGAAGCGCTGGACTCTTGTCGCAGCCAGGGAGCTGACCTGCTCAGCGTCTCCAGCTCAGAGGACCAATCCTTCCCCATCTTGGACGTGGCCCATAACAGCTGGCCAGACAAGATGTGGATCGGCCTGCACCAGCTGGACACGTCTCAGGGCTGGCAGTGGTCAGACGGCTCACCCTTCAACGACGTGCGCTGGGACAACGcaatgCCACACACATCGATCCTAAGGGAGTCAGACTGTGGATTCATGAATTCGAAAAACTACTACGAGAGTGAGGTCTGCGATAAAAAACTTCCCTACATCTGTAAGAAAAACGTCAACGTCACCCAGTCGGTAGCAACAGAGCCTTTGGTGTATAAATCCACCACATGTGACGAGGGCTGGGCCCCTTGGAACATGTTCTGTTACAAGCTGGTGAAGGATGAACCGAAGATGTTTGCTCAGGCCGAGAATTACTGTAAGACCATCGGAGGAGGCCTGGTCAGTCTACACAGCCTGGACAGCATGGAGATGATCAGCACTCAGTTCCATGCAGATGTTGTGTTGGACGTGTGGATCGGTCTGATGGGGACGGGGAACCCAGCCATCTTtagctgggctgatgagacaccAGTCTCCTTCACCTACTGGGACAGAAATCATCCTATCCAACCCTCAGGAGACTCTGGCTGCGTCTCCTACTccggagagTCTCATGGCTGGAGGGTTAGGAGCTGTGGCCAGAAGCTGCCTTTCATGTGTCAGAAGAAAGGAGAGGTGAACGAGTCTTCTACGACAGGATGCCCTCCTGAAGGGGACTGGAGGAGACATGGGAACTCGTGCTACAAAGTGGACTCTAAAGAAGTGTCGTTCAAGGACAGGTGTGACCTCACCATAAAAAACAGGTTCGAGCAGGCCTTCATCAATAGACTCCTTGTGGAAGAGATCAACGTAAAGAGACAGTATTTCTGGACTGGCCTCCAGGACATAAAGACTACAGGGGAGTACCAGTGGGTCACTCAGGATGGCTCGGGAACCAACGTCGCATACACCAACTGGGGCTGGTTTGAACCAGccctAGCAGGGGGCTGTGCAGTGATGTCCACAGCCAAGCCTCTGGGTAAATGGGTGGTAAAGAACTGCACCATGTTTAAAGCTGGCTCCATCTGTAAGAGAGACATCGCCGCTCCACAGCCCCTAGAGCCTGAGCCTGACCCTAACCTCCCCTGTCCTGATGGATGGACATCCAGGCCTGGCATTTCCTACTGCTACAAGGTGTTCCACGAGGAGAGGCTGAGTCGTAAGCGGTCctgggaggaggcagagaggttCTGTGAGGCCCTGGGGGCCCATCTACCCAGCTTCAACCACCCACAGGAGATGGGAGCCCTGAACTATGTCATAAGAGACTCCATCAGCGATGACCGGTTCTTCTGGGTGGGGTTAAACAGGAGAAACCCAGCTGCTGGTTCCTGGGAGTGGAGCGACAACAGGCCTGTGTCCATGGCCATTTTCCCCCAAGAGTTCCACGAGGATGACGAGTACAACCGGGGCTGCACAGCCTTTAAGACACTGAAAGGAACCTTTAGGAGTTTATTTGTCTTCCTGATGCACGAATTCCCTCCTCTGCCGTTCTACGCTACCCCATTCCACTGTGACGCCAGGCTGGAGTGGGTCTGCCAGATCCCCCGCGGAAAAACTCCCGAGAACCCAGTGTGGTACAATCCTGGTGGGCACCATGAGACTTCCATATTCATTGACGGTAACGAGTTCTGGTTTGTGACGGAACCAAAGCTGCCATACGAGGAGGCTAGTTTGTACTGCAACAGCAACGGCAGCAAGTTGGCAGCACCACAAAGCTCCAACGCAGCCATACAGATCCACAATAATCTGCCACAGATGCCAGCAGGGAAGCAGAGCTGGTGGGTGGATGTAAGAGACACTGGACACTACTTCCCCATGAGGTTTTCCCATATGCACTACTACCGGGCTGCGTTCCTGGGCAGGTGTACAACCATCAGTGACAAGAACATCTTCCCAGAGTACGAGTACAGCTGTGAGCTGAAGCTGCCATTCGTGTGTGAGAGACACAATACCACAGCTATAGAGACCCACCCTGGAGAGCCTCACCCCAATGGTCTGCCCTGTGAGAGCGACTATTTACGCTTCAGGGACAAGTGCTACGTGGTGATCAAGCCTCTGTACCTGACTTTTCAACACGCCAACGAGCACTGTCAGTCGATGAGAGGAACTCTACTCACTATCACAGACCAAGTTGAACAGGACTTTGTGACCTCGCTGTTGCCGGCGCAGCCCCAGAAGACGTGGATTGGCCTGAAGCTCAAACAGCAGGACCCAGAGTGGGTGGATGACTCCCCGGTCTCCTACCTCAACTTTAACCCCCTGCTTCATGGCCTACTCAGGCCCATACTCGTCAACCTTCATGACCCAGAGAGAATTGAGCTGTGTGTCTTCGTGTTCAACGACCCCAGCTCTGCCATGATGGGCTCCTGGGACTACACCTCCTGCTCTGACCAGCAATATGTGTCCATCTGCCAGCACTATGCAGACAAGCCAGAGGAGCCCCAGTTCCAGTTGGAGCCATTCCAGGTCAACAACCACACCTTTAAGCTGCTTCAGAAGAACATGACGTGGCACGAGGCTCTGGCGGAGTGCAGGAACCAGAACATGGACCTGGCCAGCGTAGCCGACACCCTGCTGCAGTCGGTCCTCACCGTGCACGTCACCCGCGCACGCAGCCCCATGTGGATCGGCCTCTTCAGCGCAGACGATGGTGTCCACTACCACTGGACAGACCACAGTCACACGGTGTTTAGTCGCTGGTCCTCAGAGCCCACCGTTGGACACTGTGTCTTCCTGGACACGGACGGCTTCTGGAAGGCTACGGAGTGTATGGAACAGTTGGCAGGGGCTATCTGCCATGTTCCACACGAAGAGACTCACACCACCCCTGAGGACAGGGCTGTGAAATGTCCTCACAAGAGCGGCGGGCCAAACTGGATCCCCTTCAAGAACAACTGCTACACCTTCCAACTGGCATCGTCCAGATGGGAAGAGTTTGACAAGGGCCAGATACTTCAGACGTGCAAGAAACTGGATGCTGATGCAGACATCCTGACCATCAGGAACGTAGTGGAGAATGAGTTTGTGAAGGAGCAGCTCCTTCCCTTCAAAGACCTGGTGCAGTTTGTCTGGCTAGGGGTGTTCAACGATGACAACGATAACCAGATGAAGTGGTATGACGGTACCAACGTCCAGTACTCTAACTGGGGAGATGGAAGACCAAGCGTCTCAGCCAGCGATGAGTTTGTGGCGGGTCTCAACACTGAGGGAGTCTGGGAGATATTCACCAACAAACGCCACTTCAGCCCCTTCAAGCAGAGAAGCATTGTGGTCTGCAAATTGGATAAAGACTCTAAGGACGAATACAATCAGTCGGTCAGGGACTTTGAGCGCTATGGCAACCTGAGCTACCACGTGATAACCAGGAAGTTGAGCTGGTTCCAGGCGCTGGAGGAGTGTGGCCGTGGCAACGGACACCTGGCCAGCGTGCATGACACCGGGCACAACGCTCACATGGAGCTTATCGCCAAGCGAGACGGCTTCCCGCTGTGGATCGGTCTGTCCAGTCAGGATGCTAGTGGCTCTCAGTCTTATGAGTGGTCCGATGGGACTAAGTATCACTACAGTCAGGCGGGACTCTCCGACACTGTTGTCAAGTCCAGCTCAGACCctcagagtgtctgtgtgtacatCACTCCCCATGGCACCTGGATGAGAATGGACTGCAATGCCAAGCTGGACGGAGCCATCTGctacaacaccaccatcaccacccccactcAGAGATCGAACCTCGCAGTTCCCCAGGTGGCCAACAACTGCCCTCAGAACAGTGGCTTGTCTAAGTGGGTTGAGCACCAGGACCACTGCTATGCTTTTGACATGACCTTCTATAACTACTCTGTGTACAGCATGGAGGATGCCAAGAGCATCTGTGAAAGGCTTGATGCACAGCTGCTGACCATAATGACCAAAGAGGAGAATGACTTTGTCTCTGGCTACATGGCAGACAACCCTCTCATCACCAGTAGGGTGTGGCTCGGCATGGACCTGGACAAACAAGGTCAGCCAGTGGGCTGGGTGGACGGTTCCTCTCTGGCCTTCTCTAACTGGGAGACCAAGGGTTCTGCTAGTGGGGTGAAGACAGCGACCCAGCAGAACTCTTGTGCTGTCATGGTGTCTGCAGACGGAGGTGTCTGGAGCAGAGTCAGCTGCAAGGACAGCCACAGCCGCATCGTCTGCAAAGTACCCACACGGTCGGGGAGCGTCCCGGTGGCGCTGGTCTTCTTCCTGGTCGTCCTCACCGCCCTTCTGGCGGCCATCGGCTTCGTCGTTTATAAGAAGAGCAGGGCCAGATTCAACTCCACCGTGCGCTACAGGAGAACCATTGATGATGCTGACAGCACTAGTATAATGGATGCAGAGTGAGACTTGTCTTCTATCTATGCAGTTTAAAGAAGCAGTTATTTGCCTACATTTATTCAGTATGGAAATATTATTATGCAGCAAACTGAAACCTGGCTGCCTTTTCATTTTAAAAGACAACtttatttatttgtataaatTCCCAAGCAggcttttttttttgcattttctgTGACATTGTAAATATTGGCAAAAGGATTTTGAGAATCCCCAAACTAGAATTTTAGTATTTTTTGGTTGTTTTACCTTATGTTTTAATTAACTTTACAATGATTATTTTAGAGAAAGAGCTGCCACATTGAACAGTTGCTGCAGTGTTGATGGACTTGACAAAAAAGGCACTGGATACGTGATGCTTGTTGTCAGGGTATTTTTCCTTCTCGGAGGCACTGATGTTTTTCTCTGTTTTCACTCTTTGTGATTATTTTGTCATGGAGGAAGGTGTCGTTTTCACTGTTGGTCATTGACGAAAGAAGGAACAACTGCATCATGGCACTTTCATTAACAGAACTATAATTATTAGCTTGATGTACTTTcatcatttaaaaaacaatttaagGTCTAATACAGGTACTCTAGCTAATGCAGTCCAACACAGACTCCCTTAGACAATTTGGAGTGGCATGCATTCTCATTTGCCATTTGGCCATTTCAACTACATGCAATTCATTCCAACTGTAAATGCCTTAGGTGCATTCTCTTTGTCATGACTGTAACCTTCCTCTCCTATGCGCTCAAACTACTGAGAACATTTGCACTTTAAATTGAAACGTTTTATCGTGAATAATGCCTTAGCAGTTGTTTCTGCCACGTTCAAGCACAATAGTTGTCTTAGGGGTGTTCATTTGGGGTTAATGTTTTCAAAGGTCGCTACTTGCTGAGGCCTCAAACTGCACACAGCTGCTGTAAATGCTTTGTAAATATTtaaattctttttttttaaattgtattatgGAGAATCTAAACCAAAGATGTTTTTTTGAATCTCGTGAATGTTGATAACCTGGACATTCCTCTAGACTTTATTTGGATCTGCCTTGCAACAATGCTTGTTAACTAGGATTACCATTCCCAAAATGTTCAACAGTATCTTCATATCTACATTTTGGTCCCAAGCAGACCATCCACAACACTATGGTCTTCCAATAAAATAGGTTTGTCTTTAA

Function

GO: NA

KEGG:

id description
K06559 LY75, CD205; lymphocyte antigen 75

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU666925 lncRNA downstream 6435 21038306 ~ 21039785 (-) True G584673
TU666864 lncRNA downstream 12436 21033561 ~ 21033784 (-) True G584618
TU666818 lncRNA downstream 92022 20951977 ~ 20954198 (-) True LOC110527478
TU666733 lncRNA downstream 97124 20946423 ~ 20949096 (-) False LOC110527476
TU666938 lncRNA upstream 843 21080836 ~ 21082395 (-) True LOC110528811
TU666964 lncRNA upstream 47566 21127559 ~ 21127793 (-) True G584709
TU667434 lncRNA upstream 51467 21131460 ~ 21131659 (-) True G585116
TU667414 lncRNA upstream 52664 21132657 ~ 21195160 (-) True G585106
TU667480 lncRNA upstream 165598 21245591 ~ 21245934 (-) True G585162
XM_036982902.1 mRNA downstream 25024 20951977 ~ 21021196 (-) False LOC110527478
XM_036982892.1 mRNA downstream 25025 20951977 ~ 21021195 (-) False LOC110527478
XM_036982894.1 mRNA downstream 25025 20951977 ~ 21021195 (-) False LOC110527478
XM_036982895.1 mRNA downstream 25025 20951977 ~ 21021195 (-) False LOC110527478
XM_036982896.1 mRNA downstream 25025 20951977 ~ 21021195 (-) False LOC110527478
XM_036984416.1 mRNA upstream 805 21080798 ~ 21110934 (-) False LOC110528811
XM_036982911.1 mRNA upstream 31067 21111060 ~ 21125359 (-) False LOC110528812
XM_036982912.1 mRNA upstream 31067 21111060 ~ 21125359 (-) False LOC110528812
XM_036982909.1 mRNA upstream 31067 21111060 ~ 21126890 (-) False LOC110528812
XM_036982908.1 mRNA upstream 31067 21111060 ~ 21128515 (-) False LOC110528812
TU666669 other downstream 206884 20838488 ~ 20839336 (-) False LOC110527470
TU666686 other downstream 268155 20772867 ~ 20778065 (-) True otos2
TU665792 other downstream 796235 20215649 ~ 20249985 (-) True G583661
TU663175 other downstream 2811182 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 3002840 18042927 ~ 18043380 (-) True G581089
TU667558 other upstream 341461 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 437402 21517395 ~ 21518873 (-) True LOC110527499
TU668281 other upstream 1012819 22092812 ~ 22094339 (-) True LOC110527506
TU668853 other upstream 1383215 22463208 ~ 22470518 (-) False G586414
TU668953 other upstream 1530168 22610161 ~ 22620116 (-) True LOC110527522

Expression Profile