RNA id: XM_036982910.1


Basic Information

Item Value
RNA id XM_036982910.1
length 3345
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110528812
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21111060 ~ 21128520 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCATGCTTCATAAAGCTGTCTGTTACTGTAGGTTTATAGTTACTCCTGCCCAGGGCTGCAGTTGGAACTGGACGTTTTGAGGGCCGGCGGCAGTGGCGGCGTCTCCCTGATTCCTCTCCCCTCATTTTTCAGGCGGCGACAAGGACGCAGCTCCCCTTTGACAGGGCAGCATGGTACCAGAGGAGGGCCCTGATGTAGTAACCGCGAGGACCAATGGGGATTGCTGTACTTCTGCTCCTGATTCTTCGGCATTGGATCAACAACGTGGAGGGAACATGTTCGGTTGGCAGCGCAGTGACTTGTGACGAGTGTCTCCAGCTGGGTCCCCACTGTGCATGGTGCACACAAGAGAATTTCACAGACTCGTTTTTAATTAGTGAGCGATGTGACACGCCGTACCTCCTCCTAGGGAGAGGCTGTCCCCAGGACCAGGTAGAATTTCCTGTGACCAACTCCGAGGTCCTCCGGGACCAGCCTCTCGGGAAGAAGACGGGGAATACAAACAGCACCCAGATTTCACCACAGAAGATGGCCCTCAAACTCAGAACTGGCAGTGAGGTGACCTTCCAGATCAGTGTGCAGCAGACAGAGGACTACCCTGTAGACATCTACTACCTGATGGACCTCTCAGCCTCCATGATTGACGACCTGGAGATGATTAAAGACTTGGGCTCCACCCTGTCCAAAGAGATGGCAAAGCTCACCAGTAAATTCAGACTTGGATTCGGGTCCTTCGTTGAGAAACCAGTCCTCCCGTTCATTAAGATCACTCCTGGAGAACTGGAGAACCCTTGTAGGAGTGTGGATGAGAGCTGTCTGCCAACGTTTGGATACAAACACATCCTACCTCTCACCAGCAGCACAGAGAAGTTCAACAATATCATCACCAACCAGCGTGTGTCTGCCAACATCGACCTGCCGGAGTGTGGCTTCGATGCCATTATGCAGGCTGCTGTCTGTGGGGACAAGATAGGCTGGAGGAACGACTCCATGCGTCTGCTGGTGTTTGTGAGCGACGCCGACTCTCACTTTGGGATGGACAGCAAGATGTCAGGCATCGTCGTCCCTAACGACGGGGAGTGCCATCTGGACAGCAACAATGAATACTCTATGGCTGCCCATCTGGAATACCCAACTCTGGGACAGCTGATGGATAAACTGGTGGACAACAATATCCTGCTTATATTCGCTGTGACGGAAAATCAGAAACACAACTATGAGAACTATGCAAGTTTCATACCTGGTGCCACGGTGGGGGTTCTGGAATCCGATTCAAGGAACATCCTGGAACTGATTGTGACGGCGTATAAAGAGCTGCGGTCTGAGATAGAACTGGAGGTACTAGGAGACACGGAGGATCTACAGATCTCCTTCACAGCGATCTGTCAGGATGGGACGGTATTACCTGGACAGAAACGATGCTCCAACGTCAAAGCTGGAGACACGGTCTCCTTCAACGTGACTGTAGAACTCTCTGAGTGTCTCGACGGTCCCCAGCGTTTCCTCATCAAACCGGTGGGCTTTCAGGACCCCCTGGAGATAGACCTGGAGTCCCTGTGTTCCTGTGCCTGTCAGCAGACCCCCGAGCCCAACAGCAGCCACTGCAGTCTGGGCCGGGGATCTCTGGAGTGTGGCTCCTGTCTGTGTAATCCTGGGTACATGGGCTCCAAGTGTGAGTGTACGGAGGAGAGCGTCCAGAGCAGTAACTGCAAGGAAAGTGGCGCTCTTGAGTCCTGTAGCGGGCAAGGGGAGTGTTACTGCGGCCAGTGTGTGTGTCACCCGTCTAGTTTTGGACGCGTCTACGGGGCCTACTGCGAGTGTGACGACTTCTCGTGTGTGAGGTTCCGAGGGGTCCTCTGTGGAGgtcacgGGGACTGTGACTGCggcgagtgtgtgtgtcagagcggCTGGACGGGGGAGTACTGTaactgcagcagcagcagggacATGTGTGTGTCGGAGGACGGAGCGCTGTGCAGCGGACGGGGGAAGTGTGTGTGcgggaagtgtgtgtgttccatgccCGGAGCCTCTGGAGACACCTGTGAAAAGTGCCCTACCTGTGGAGACACCTGTAGCTCTGCTAGgaCCTGTGTGGAGTGTCATCTCCAAGCAGAAGACGAGGCCACAGAGGAGTGTGTCCAAAGGTGCAGCGTCCCTCACGTCTTCGTCAACAATTCCACAGAATACGATGAGAGCCGGTCCACGCTGTGTACCCTAAAGAGTGAGAACAACTGCTTCATCTCTTTCAGTGTGGTGGCTGGAGACGCAGGGAGCACTGTGTATAATCTAAAGATGTACGacTGTCCTGAGCCCCCCAACATAGCTATGATAGTACTGGgggtctctctgtccatcctcaCCATCGGCCTCATCCTGCTGGGGGTGTGGAAGCTGTTGATCTCAGTCCACGACCGCGATGAGGTCGCCAAGTTTGAGGCCGAGAGGGCAAAGGCTAAATGGCAGTCGGGTACAAACCCTCTGTTTAGAAGCTCGACATCAACGTTTAAAAATGTAACTTATAAAAGTGCAGGGGGACCAAAAGTTGATATTCATTCAATGGATGGCTGCTGATGccgacatcagtgtgtgtgtgtgcatgtgcatgtgtgtgtgtggtgtaaggACAAACTGTAAACACCACAATGTACAACATTGTATCACTCCAAAGGGTCTGGATCTTCTTCAGGGATGCTATCTCATATCAGCAGACAGAAAATGGAATGTCTAGCTATGAATCATCTCTAAATGAAATGATTTTGATTTTGCTGCTCTCTGGTACAAACACTCTGCTGAACTGAACACTGGATTTTCCCATTTAGATTGTTACAGatttaggatcttaatttgatcaccccgttgcaggagaactttcctgcaatgcaggaaatgtcaaaattgttgtgtatttgaggtttaaaaaggtttctgaagtttgtaatttccgctttgaaatttcagacttgattttcccttactaAAAATATGTAAACCTCTACAACAATATCCATGTGTAATTCACATAATTATTTACATTTCTGgtttctgcaggattattttcctgctgtagcaaactggctcaaattatgaTCCTACATCTTTACTTTTTTTGATAGATTTTGGTTTGGGACATAGGTAGCCTAAAAGAGAGAACAAACTGAGTAGGCTTGATACTACTGCAATAATGTttaatgttttttgttttataAAAGTTTTGTTTTGGGTTTTGAATCGAGGCTGAGCCTTGAATATTGTAATATTGATTGGACTCATTTTGAGAAGAATAATGGATTACCTTCAATGTAAGGCGCAAAAATAAAGTTGAACTTTTGAGTTGTTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU666938 lncRNA downstream 28665 21080836 ~ 21082395 (-) True LOC110528811
TU666925 lncRNA downstream 71275 21038306 ~ 21039785 (-) True G584673
TU666864 lncRNA downstream 77276 21033561 ~ 21033784 (-) True G584618
TU666818 lncRNA downstream 156862 20951977 ~ 20954198 (-) True LOC110527478
TU666739 lncRNA downstream 161964 20946423 ~ 20949096 (-) True LOC110527476
TU667434 lncRNA upstream 2945 21131460 ~ 21131659 (-) True G585116
TU667414 lncRNA upstream 4142 21132657 ~ 21195160 (-) True G585106
TU667480 lncRNA upstream 117076 21245591 ~ 21245934 (-) True G585162
TU667485 lncRNA upstream 131332 21259847 ~ 21260149 (-) True G585167
TU667490 lncRNA upstream 139586 21268101 ~ 21268314 (-) True G585172
XM_036984416.1 mRNA downstream 126 21080798 ~ 21110934 (-) False LOC110528811
NM_001195412.1 mRNA downstream 31067 21046220 ~ 21079993 (-) True ly75
XM_036982902.1 mRNA downstream 89864 20951977 ~ 21021196 (-) False LOC110527478
XM_036982906.1 mRNA downstream 89865 20951977 ~ 21021195 (-) False LOC110527478
XM_036982916.1 mRNA upstream 5860 21134375 ~ 21154437 (-) False LOC110527480
XM_036982921.1 mRNA upstream 5860 21134375 ~ 21154438 (-) False LOC110527480
XM_021608773.2 mRNA upstream 5860 21134375 ~ 21154439 (-) False LOC110527480
XM_036982922.1 mRNA upstream 5860 21134375 ~ 21154439 (-) False LOC110527480
XM_036982918.1 mRNA upstream 5860 21134375 ~ 21154440 (-) False LOC110527480
TU666669 other downstream 271724 20838488 ~ 20839336 (-) False LOC110527470
TU666686 other downstream 332995 20772867 ~ 20778065 (-) True otos2
TU665792 other downstream 861075 20215649 ~ 20249985 (-) True G583661
TU663175 other downstream 2876022 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 3067680 18042927 ~ 18043380 (-) True G581089
TU667558 other upstream 292939 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 388880 21517395 ~ 21518873 (-) True LOC110527499
TU668281 other upstream 964297 22092812 ~ 22094339 (-) True LOC110527506
TU668853 other upstream 1334693 22463208 ~ 22470518 (-) False G586414
TU668953 other upstream 1481646 22610161 ~ 22620116 (-) True LOC110527522

Expression Profile