RNA id: XM_021608767.2


Basic Information

Item Value
RNA id XM_021608767.2
length 2795
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110527480
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21134375 ~ 21165794 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTATATTtcatggtagtgactggttatctGTTGATTGTCAAACAGTGAAACGTGTTCTGTATTCAGAATAGTAATACTAACCGTACTCAATAGCAAGGTCATTTGATTATATCTTGAAACATACCTCTAGTGTATGCGCAATGGTTTGGTCTGTGGAAGGCGGGACTCAGGAGCGGTCAGCAGGACGTCGTAGATCAATGAACTGAACTGAGTTTTCTGCCTGGGTTGGacgacactttggtgggattaaacCCTATAACCTACGCAGTGTAGCATATGTCAGGTAGCCTACCGATGTGACAACGCGACAAGGACATTTTAATCAGGATCAAAAACGGAAATACCGGAGTTCATTTCTAACCCGGTCGATATGCGGATTTTGTCCAAATAAACCCACTGGATTCTAATAAACGGGTCTGCATGTAGCTTCATTTTTTGGGAGTAAACACGCTTCTTTTTTTATCTCGGAATAACTGGAATAGGCTATCCAGGATGATCTTTGCAAACACTGCCAACCCGTTGAAGAGCACATATCGGAAGCAGTCGTACCCCATGGCTCCAGCCAGCCCCAGCACGGTGAGcaccagcagcaacagcagcaccaCAGGATGGGACCAGCTCAGCAAAACAAACCTGTACATCCGCGGCCTGCCTCCAGCAACCACTGACCTGGACCTAGTCAAGCTCTGCCAGCCATACGGCAAGATCGTGTCGGCAAAGGCCATCCTCGATAAAACAACGAACAAATGTAAAGGGTATGGGTTTGTGGACTTTGACAGCCCTGCAGCAGCCCAGAAGGCGGTCCATGCCCTAAAGACCAGTGGGATACAAGCCCAGATGGCTAAGCAGCAACAGGAGCAGGACCCCACCAACCTGTACATCTCCAACCTGCCTGTGTCTGTAGACGAGCAGGAGCTGGAGGGGCTGCTGAGGCCTTTTGGACAGGTCATCTCCACCCGCGTCCTCAGAGACTACAGCGGGGCCAGCAGAGGCGTCGGCTTCGCCAGGATGGAGTCCAAGGAGATGTGTAACTCAGTCATAGCCCACTTCAATGGGAAGTTTATCAAGACGGCGCCTGGAACTACGGCTCCCTCTGAGCCTCTGCTGTGTAAGTTTGCTGATGGTCAGAGGAAGAGGCACAGCCACAGTCCCTACATCCCCAGCGGTCGCACATGGCCCCGAGAGGGAGAGCTCAGACTAGGCGGGATGACTCTCACCTACGACCCCACCTCAGCTGCTATGCAGAACGGCTATTATGCCTCTCCCTACACCCTAACGGCCAATAGGATGATGACTCAGCAAGCCATGTCTCCCTACATGTCTCCTGTCACCTCCTACCAGGTACAGAATCCTTCCTGGATGGCCCACCAGCCTTACATCATGCAACACCCAcaggCTGTAATGTCGCCCTCTGTGGACCACTCCATGACAATGCAGCCCACCGCCATCATGACACAGCAGATGGGCCATCTCTCATTGGGCAGCAGTGGAGCGCAGTATATTTCAGCCAACGCTGCAGTCCAGGCAGCCTATATTCCTCAGTACGCCCACATGCAGCAGACAGCCTTTTTCCCTCTTCAGGAAAATGGTTCACAGCAGCAAATGGATTCGTCCAACAATTCGTCTCCCTACAGTCAACAGAGCAAGTGACTTCTGTGAGCAGTAATGGATGCTGTGATCGCTGACTCATGAGTCACAGTCACAGCCTCTCCTGATTGGACCAGACCAGACTTCAGTAAGAACTCTTTTGCACAGCTTCAACCAAACAACTGTGTATGATGGAACCAACATCAATGATACCATGGTGTGTAAAACGAAGACAGAGCTGTAAAAATGGACAAAACCAACAATTATTTCCCCCCCCTTCAAAacaggaaaaaaaatgttttattttgataAACGAAAAGACGTGTATTTTTTACCACGGATTCTCCAAGTGGATGCAATGGGGCAAGTAGCCTACAGCGTGATGTTAAAAGATGCATGAGATTGATTCTTTTTTTTTGTGGAATCTGTTGACTTAAGGAAAAAGAGATTTCCaatgggttttataggtagtttATTAGCCAAGATATATGATGAAAAACATGTTGCTTGCAAAAAGTGTTCATTTGGTGAGGTGTTACTGGTTTTTATTTTTGGTCTTTATAAGATATTATCATTCAATTAGGCTTTTAGGGTTAATGTCTGACATGATTTTCTGTATCAGATTAAATATGTAGGATTGGCCGTTTGGCAGCTGTCAATCAATCTATGAATAGAGAACTGATAAAGAAGCAGATGTTTTGCCAAATAGATGATGGGTTGGATAATGTGCCTTCCTCTAACATCATAAGTCATTTTACATAGCCTGGCAGAATCCGAACTGATTCCCTGACGTTTCACTGTTTCACTTCATGGTGATCACAGTATTCAGCCTGGTCTAACCAGGATACATTAAAAAGAACAGCCACTCTTAATTAGAACTCCTGTCAGTCCATAGTAAGGTCTCTTTAGACTTTGACAGGGTAGGTGTCCTGTTTTGTCATACTTCACACACAGCCGAGGATGTGAACCTCCATCAAATGCTACACCTACTGATCTCATCTCCCTAATTAAGGCGAGAGAGCCTacaattcaaataaaaaaaacacgtATAGATTTAAAAGAAATGCAAGCTTGAAATTGTGAGGTAACGTCAAGGCGGTTAAACTTTTTTCTCTGCTATTTTTTACTTCAACAGATACAGTAATATTAATAGAAAATGCTTAACTTTAATGGTGAAATTACAATCTGTTTTACTTTACGCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU667434 lncRNA downstream 2716 21131460 ~ 21131659 (-) True G585116
TU666964 lncRNA downstream 6582 21127559 ~ 21127793 (-) True G584709
TU666938 lncRNA downstream 51980 21080836 ~ 21082395 (-) True LOC110528811
TU666925 lncRNA downstream 94590 21038306 ~ 21039785 (-) True G584673
TU666864 lncRNA downstream 100591 21033561 ~ 21033784 (-) True G584618
TU667480 lncRNA upstream 91149 21245591 ~ 21245934 (-) True G585162
TU667485 lncRNA upstream 105405 21259847 ~ 21260149 (-) True G585167
TU667490 lncRNA upstream 113659 21268101 ~ 21268314 (-) True G585172
TU667498 lncRNA upstream 124800 21279242 ~ 21279478 (-) True G585180
TU667529 lncRNA upstream 197689 21352131 ~ 21352574 (-) True G585211
XM_036982913.1 mRNA downstream 5855 21116455 ~ 21128520 (-) True LOC110528812
XM_036982908.1 mRNA downstream 5860 21111060 ~ 21128515 (-) False LOC110528812
XM_036982910.1 mRNA downstream 5860 21111060 ~ 21128515 (-) False LOC110528812
XM_036982909.1 mRNA downstream 7485 21111060 ~ 21126890 (-) False LOC110528812
XM_036982912.1 mRNA downstream 9016 21111060 ~ 21125359 (-) False LOC110528812
XM_021608781.2 mRNA upstream 29508 21183950 ~ 21189129 (-) False LOC110527485
XM_021608780.2 mRNA upstream 29508 21183950 ~ 21205077 (-) True LOC110527485
XM_021608778.2 mRNA upstream 51989 21206431 ~ 21223145 (-) True LOC110527483
XM_021608777.2 mRNA upstream 70110 21224552 ~ 21243191 (-) True LOC110527482
XM_021608782.2 mRNA upstream 96827 21251269 ~ 21254666 (-) True LOC110527486
TU666669 other downstream 295039 20838488 ~ 20839336 (-) False LOC110527470
TU666686 other downstream 356310 20772867 ~ 20778065 (-) True otos2
TU665792 other downstream 884390 20215649 ~ 20249985 (-) True G583661
TU663175 other downstream 2899337 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 3090995 18042927 ~ 18043380 (-) True G581089
TU667558 other upstream 267012 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 362953 21517395 ~ 21518873 (-) True LOC110527499
TU668281 other upstream 938370 22092812 ~ 22094339 (-) True LOC110527506
TU668853 other upstream 1308766 22463208 ~ 22470518 (-) False G586414
TU668953 other upstream 1455719 22610161 ~ 22620116 (-) True LOC110527522

Expression Profile