RNA id: XM_021608778.2


Basic Information

Item Value
RNA id XM_021608778.2
length 2064
RNA type mRNA
GC content 0.54
exon number 9
gene id LOC110527483
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21206431 ~ 21223145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTACTAAAAAGCCACAGATGGTAGAATGAATTTGTATGCGCTCCACTCAATATGTGTAGCCCTGCTGCGGTGACCAGGCCGCTCCGACTCACAGTTCACCACCGCCAGAAACTGTCAGTGGCGCTGGACGGCTTTGTGTCTGGTGGTCGGAGGTTCAAGTCCGGTGCCAGCAGACACGTGGGACAAAAATTGCAGACAACGATAGAAACAACTCCGGAGAAGTGCAAAACAATAGACGATCTACACGGACCTAGTTTGGCCACGACTGTGTATTGGCTGTTCGTGAAGGGATATGCAGATAAGAGCCATGCGATGCAGGTTGAACACAAGAAACTGTACGGGCCCATCTGGCGCTCGCGGTTCGGCCCGTTTGATGTGGTGAACGTGGCGTCTCCAGAGCTCATATCCCAGGTGATCCGTCAGGAGGGCCGCTACCCGGTCCGGACAGAGCTGCCACACTGGAAGGAGTACCGCGATATGAGGGGACAGGCCTATGGACTCCATGTGGAtACAGGCCCACAGTGGCACCGTATCCGTAGTGTCCTAAATCCAAAGATGCTGAAGCTAGCGGAGGTGTCTGCGTACGCGCCTGTCATCCACCAGGTGGTAGGGGACCTGCTACAGCGTATTGAGAGCCTCCGCCTCCGCAGTCAGGACCACACCACCGTACCAGACCTCACCGCAGAGCTCTACAAGTTTGGCTTTGAAGGGATCTCTTCCATCCTGTTTGAGACGCGGCTGGGTTGTCTGCAAGAGGAGATCCCTAAGGACACGCTGAAGTTCATCGCTGCAGCCAACAACATGCTAACCCTGTCTGAGACCGTCCTCTTCCTCCCGCTCTGGACACGCAACGTCCTGCCCTTCTGGAAACGATTTGTCCAAGCCTGGGACGACCTGGTGGCTGTAGCTCAGCGTCTCATTGACCATAAGTTGGCGCAGATGGATGCCCAGGTGCTGGCTGGGAAGCAGGTGGAGGGGATGTATCTCACCTACCTGCTGTCCTGTGATAAACTGACCCTGGAAGAGGTGTACATCAGCATCACAGAGCTGTTGCTGGGCGGAGTGGACAcgACGTCCAACACCTTGTCGTGGGCATTGTACCAGTTGGCTCGCGACGCCGCGTCTCAGGACAGGCTGTACCGTGAGATCATGTCTGTGTGTCCGGGAAGACAGCAGCCTAGATCAGAGGACCTGAGCAGGATGCCCTACCTGAAGGCTGTCATCAAGGAGACTCTGAGgaTGTACCCTGTAGTTCCAGGGAATGGCCGTCTAACCGTAGACAATGAAGTTGTTGTGGACAACTACTGGTTCCCAAAGAAGACCCAGTTCCATCTCTGTcactatgctgccagtcatgACGAGGGGGAGTTTGTGGATGCAGAGTGTTTCAGGCCTGAGCGTTGGCTGCGAGGGGACCCAGAGTCGTACCAACACCACCCCTACAGCTCTATACCCTTCGGGGTGGGCGTGAGAGCCTGTGTGGGCAAGAGAGTGGCAGAGCTAGAGATGTACTTTGCCCTCTCCAGGCTGATGCAGCATTATGAGATCCAGCCAGAGGATGGGGCCCCGACCACAGAGCCCAAGACTAGAACACTGCTCATCCCATCCAAACCCATCAACCTGCGCTTCCTACCCCGAGCCTGAGGAGGGTGCCAGGGAGTTATAGAAAGGGATTGACAGGAGGGTCTGgtgttgtgctgtgctgtggtAACCTCCAGTCCCCTAGATCCCCTTAAACATAGCCGATTGAAGTAGTTTGGGTGGGGGGAGGGGATGCTgaaaaataaagtttgttcatgCTACAGACAGCTATatcggtctgctaatacaggactagtaaaggctcagtgcacaacttttgtgaagaaattatacccccccccccctcccctcaaatGCCCTCAAACCAAATCTGATTCATATCAGGTTATTctgacacggaacccaaaccggctgcgagCGTGCgttatcgtgcatacatttatttgtcCCGCTACACCAaatgcgatcacgacacgcaggttaaaatataaaaacaaactctgaaccaatgacattcat

Function

GO: NA

KEGG:

id description
K00488 CYP27A1; cholestanetriol 26-monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU667414 lncRNA downstream 11271 21132657 ~ 21195160 (-) True G585106
TU667434 lncRNA downstream 74772 21131460 ~ 21131659 (-) True G585116
TU666964 lncRNA downstream 78638 21127559 ~ 21127793 (-) True G584709
TU666938 lncRNA downstream 124036 21080836 ~ 21082395 (-) True LOC110528811
TU666925 lncRNA downstream 166646 21038306 ~ 21039785 (-) True G584673
TU667480 lncRNA upstream 22446 21245591 ~ 21245934 (-) True G585162
TU667485 lncRNA upstream 36702 21259847 ~ 21260149 (-) True G585167
TU667490 lncRNA upstream 44956 21268101 ~ 21268314 (-) True G585172
TU667498 lncRNA upstream 56097 21279242 ~ 21279478 (-) True G585180
TU667529 lncRNA upstream 128986 21352131 ~ 21352574 (-) True G585211
XM_021608780.2 mRNA downstream 1354 21183950 ~ 21205077 (-) True LOC110527485
XM_021608781.2 mRNA downstream 17302 21183950 ~ 21189129 (-) False LOC110527485
XM_036982927.1 mRNA downstream 40637 21134375 ~ 21165794 (-) False LOC110527480
XM_036982920.1 mRNA downstream 40655 21134375 ~ 21165776 (-) False LOC110527480
XM_036982919.1 mRNA downstream 40812 21134375 ~ 21165619 (-) False LOC110527480
XM_021608777.2 mRNA upstream 1407 21224552 ~ 21243191 (-) True LOC110527482
XM_021608782.2 mRNA upstream 28124 21251269 ~ 21254666 (-) True LOC110527486
XM_036982939.1 mRNA upstream 64685 21287830 ~ 21304002 (-) False cdk15
XM_036982940.1 mRNA upstream 64685 21287830 ~ 21304408 (-) False cdk15
XM_036982942.1 mRNA upstream 64685 21287830 ~ 21311537 (-) False cdk15
TU666669 other downstream 367095 20838488 ~ 20839336 (-) False LOC110527470
TU666686 other downstream 428366 20772867 ~ 20778065 (-) True otos2
TU665792 other downstream 956446 20215649 ~ 20249985 (-) True G583661
TU663175 other downstream 2971393 18217158 ~ 18235038 (-) True G581174
TU663064 other downstream 3163051 18042927 ~ 18043380 (-) True G581089
TU667558 other upstream 198309 21421454 ~ 21424585 (-) True G585240
TU667595 other upstream 294250 21517395 ~ 21518873 (-) True LOC110527499
TU668281 other upstream 869667 22092812 ~ 22094339 (-) True LOC110527506
TU668853 other upstream 1240063 22463208 ~ 22470518 (-) False G586414
TU668953 other upstream 1387016 22610161 ~ 22620116 (-) True LOC110527522

Expression Profile