RNA id: XM_036982955.1


Basic Information

Item Value
RNA id XM_036982955.1
length 3263
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110527491
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21374202 ~ 21388754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCGTCATAGTTGGGATGCCCAACGCCACTTCTGCATGAGCGTTGGAGAGGCTGCGATCTGGCATGCATTGATTGCTAAAGATGTGAAAATGGCGGAGTTACAAATGCTTTTGGAAGAGGAGATTCCAGCTGGACGTAGTGCTTTATTAGATAGTTTTACCAATTTGGAAAGAGTTGCCGAGTATTGCGAAAGCAACTATGTTCAGTCACCAGATAAGCACAGAGCGTTGGAGGAGACTAAGAACTACACCACCCAGTCTCTGGCCAGCGTAGCCTACCTGATCAACACCTTGGCCAACAATGTCCTGCagatgcttgacattcaggcctcCCAGCTCCGCCGCATGGAATCCTCCATCAACCACATCTCACAGACAGTGGACATCCACAAAGAGAAAGTGGCCAGGCGGGAGATTGGCATCCTGACCACCAATAAGAACACCTCTCGCACACATAAGATCATTGCTCCGGCCAATCCAGAGAGGCCGGTGCGCTACATCCGCAAGCCAATCGACTACAGCCTGCTGGATGACATGGGCCACGGAGTCAAGTGGTTGCTAAGGTTTAAGGCCAGTGCTCAAAACATGAAGGCCGGAGCCACAGGTCTCCCTCGCACCAACCCACCCACACAGAAGCCGCCAAGCCCACCCATGTCAGGGAAGGGAACCATTGGGCGCCACTCCCCCTATAGGACACTCGAGCCGGTGCGTCCTCCCGTTGTCCCTAACGACTACGTCTCGAGCCCGACGCGCCATGGCAACATGGCGCCCCCACAGCAGAGCCCTGCACGCACTGCGTCTGTTAATCAGAGGAACCGCACGTACAGCAGTGGCAGCAGTGGAGGCAGCcaccccagcagcagcagccgcagcagcagcagagagaatAGCGGCAGCGGCTCCGTGGGCTTGCCTATCGCCGTGCCAACGCCTGCCCCGCCCCCCACAGCATTCCCAGGTGCCCCCCAGTTCTTCAGCATGAACCGGCCGGTGCAACCACAGAACCCTCCTGCGGTGGGGGGGTCTCTGCCATACCGCCGGCCCGCGTCATTAACAGGCCAGCCCAACTCCAACATGGCCCTGAACCAGCCCCAGCCCAACGGAGGACCCCACTTCAACCAGGTCCCAGcagGTCCTCTtgttgccccccctcccccctccatgcAGATCACTCCTCAGCTCCCTCTGATGGGCTTTGTGGCTCGGGTACAGGAGACCATCTCAGACGTGCCCCCTCCCCCGCCCCCTGTAGAAGAAGCTGTGTTTGAGGAACCCACCCCGCCCCCTCCAGAGGactatgaggatgatgatgaggaggaagaagagtCGGCCGTGGTGGAGTACAGTGATCCCTATGCAGAGGAGGACCCCCCGTGGGCCCCACGCACCTACATGGAGAAAGTGGTGGCGATCTACGACTACGCGGCGGACAAGGAGGACGAGCTGTCCTTCAACGAGGGCGCCATCATCTACGTCATCAAGAAGAACGACGACGGCTGGTACGAAGGAACGATGAGTGGCACCACCGGCCTCTTCCCTGGGAACTACGTCGAGTCCATCATGCACTATGCCgactgaggaagaggagaggttaTAAGAAGGTCAAAGACTTTGTTAGGCAGAGCATGATCACATTGAGGAAGTTAACGAGGAAGAGATGAGCGTTCATGAAGAGTATTTAACTATCCTCAACCGGTCTACCAGATGAAGTACATTGTACAACGGCCACTTGTAGATATTTCCTGTGTTTTTGAATGATATGAGACTTTATGGTGGGGGGTTTTTGTATGTACTATTAGGGCTTCAttttgtctttactattattttaAGGAAGGCTACAAGGATtattgtgatttaaaaaaaaagaaaaatctcATTTCCTTTGGCCCTTACTTTTAAGTTTTATTTATTTGGACCATGTATTATATAGGGAGGGATGGTACAGTGGCCAGGGCTGCTGATTAAGGATAGAAATAGATGTCAGATAATCCTGATGAAGTTCTCTACTCTCAGCCCAAGAGAAGACGCGagatgaatgttttttttttttttttgacactCCCCGAGCCTTTCTAGACTCATATTATATTTGATTTAAAACCAGGAGCAGCTCCTATTGGTTAGTGGGATTAGGAGATGGATTGTTGCGCTTGAACTTTATACAATGTCACGTTAGGCGAGAAGACaagcacatactgtatgtctacaACAGCTAGATATTAGTGGTGGGTAAGACTGGAGGGGAAAAAGACTGAAACTGATTTGTTTTCAGCTCACCTGAACACCCATTTTGAAACTCTCTTCAGTTTGGATTCAGTAGTTAATGAATTGGTTCTGGCCCAAGGCTAGCTAGGGCAGCTTAGAACACTAGGGCTTGGAGCATGCTCAGTCACTACTTCACTTGCCTCACTTCACAGGCCAGATGGGTAgagcagtgtttctcaaccttGGGGTCAGTTCTAGTTTTAATTGAAGATGTTGGCTTCCATGGCACAAAACAAGTTTGAGAAACACAACGCAAAATTAGTGAGTCTTAAGTCTCTTCCTTACCTTGTAATCAAGACAGAGAATAGATTGACTTTGACTGTCTGGGAGTCTCTTTTAGGAAGATAAATACTCTGGCCACTCATTTGCATCAATGATTTCAATATTTGATGCTTATTCGTTCTTATTGTAGTGGGTCTTCACCAAAGCGTGGCAGATGGCAtgcttttgaaaaaaaaaaattcaacagTCTCCTTTTCTGCTATATTATTCCTGTCTTAATATTTTAGATATATGGTGTGGTTATTGGTTTGGTTTTAAATATTCACCCATATTACCATCGTTGACAGGTGGGGTTTCATGATGCATTTATAGGTGATAAAGGAAGCTTGTGCCATATTGAAGTGTGCGTGTGTAGGTGTCACTTCCATttgcaataaaataaaaagcCAGTGGGATGGGTTTGAAAATGTAGATCTTTAAGTTGTTTGGGATTGAAAGCACATGTGGTAAGAGTGAATTGTTACTGAAATAAAATTTAAACTGTGTTACTGCCTCAGATGAGGACTAATATTAAAGTGAGCCGTTGTAGAAATTATCCAACAAACCGGCACCAAAACCTTTCAATGACTCCATCATGCTGAAACTGATGCATTGAGTGTGTTTATATAGTCTCTAGAGGTACAAGTATTATTGCCAATGTGCTTGGCTGTGTCTGAGGGCTCTGTGCTTGTCTGTCAGTCAAatcctttattttttattaaaagtgGGTCTGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU667118 lncRNA upstream 106116 21267844 ~ 21268087 (+) True G584830
TU667053 lncRNA upstream 119679 21251274 ~ 21254524 (+) True G584795
TU667050 lncRNA upstream 130030 21243974 ~ 21244173 (+) True G584792
TU666969 lncRNA upstream 236697 21132659 ~ 21137506 (+) True G584714
TU666966 lncRNA upstream 242975 21130910 ~ 21131228 (+) True G584711
TU667089 lncRNA downstream 541 21389295 ~ 21390450 (+) False G584808
TU667091 lncRNA downstream 541 21389295 ~ 21392225 (+) True G584808
TU667108 lncRNA downstream 5129 21393883 ~ 21438876 (+) True G584820
TU667169 lncRNA downstream 51596 21440350 ~ 21441601 (+) True G584881
TU667212 lncRNA downstream 142646 21531400 ~ 21531633 (+) True G584919
XM_021608804.2 mRNA upstream 151 21368701 ~ 21374052 (+) True LOC110527492
XM_036982946.1 mRNA upstream 9881 21355140 ~ 21364322 (+) False LOC110527490
XM_036982947.1 mRNA downstream 15813 21404567 ~ 21433139 (+) False LOC110528813
XM_036982948.1 mRNA downstream 15813 21404567 ~ 21433139 (+) False LOC110528813
XM_036982949.1 mRNA downstream 15813 21404567 ~ 21433139 (+) False LOC110528813
XM_036982950.1 mRNA downstream 27519 21416273 ~ 21433139 (+) False LOC110528813
XM_036982951.1 mRNA downstream 27519 21416273 ~ 21433139 (+) False LOC110528813
TU666895 other upstream 291588 21080828 ~ 21082615 (+) True G584643
TU665732 other upstream 1134406 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 1352476 20017855 ~ 20021727 (+) False LOC110528807
TU664011 other upstream 2397204 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 2881294 18492227 ~ 18492909 (+) True G580997
TU667948 other downstream 564275 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 967829 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 1297735 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 1312440 22701194 ~ 22703821 (+) True LOC110527523
TU669156 other downstream 1621307 23010061 ~ 23015120 (+) True G586685

Expression Profile