RNA id: XM_036982994.1


Basic Information

Item Value
RNA id XM_036982994.1
length 2101
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110527502
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21737749 ~ 21744000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTTTGTGGCAGATGCTGGACTTTCCAGCAGCTGTGATATGAAATGGATTTGATATAAATGTACAGCTCTGAATGAGGTCAGCTTTACAACATGAGAAGGCAGGAAATGTGACTTCATGCAAGCGACTTTACAGTAAATATATTGGGGTATAGCATAGCTGTCACTATGGCAACGAGCGCTGTTCCCAGTGACAATCTCCCCACGTATAAGCTGGTCGTGGTGGGGGATGGGGGAGTGGGGAAGAGTGCGCTCACCATTCAGTTCTTTCAGAAGATCTTTGTCCCTGATTACGACCCCACCATCGAGGACTCCTACCTCAAACACACTGAGATTGATGCCCAGTGGGCCATATTGGACGTTCTGGATACAGCAGGCCAAGAGGAGTTCAGTGCTATGAGGGAACAGTACATGAGGACCGGGGACGGGTTCCTCATCGTGTTCTCTGTCACAGACAAGGCCAGCTTTGAACATGTGGACCGCTTCCATCAACTCATCCTCAGGGTGAAGGACCGGTGGGATTTACTACTTAGCTTCCCACTGGTGGCCGTGGCCAGGACAACAGTCATTCCTGCCTTCCGTTATTCAGGCATTCATGCATTTATtactctgtccatccatccattcgtTCATTTATTCATTGTtattttccttattttttttaGGGAATCCTTTCCTATGGTTCTTGTGGCCAACAAAGTGGATCTGCTGCACTTACGTAAAATACCCAGTGATCAGGGGAGGGAGATGGCTAGTAAACAcagtGCAACAGATTCCAGAGAGGAGCCTGAAGAAGAAGAGGAAAACCAAGTGGCGAGCCGACAGGTCCACTGTCTCCCACCGACTGCACTGTGTTGTCCTATGATGGTTTTTTACTTGTACAGCTGCTCCCTACAGGACAGGGGGAAGATGATTTCATTTAGGAGTGTTTACTCTCTACACAGAGTTCCAGGAGGCAGTTTGTACCCTCTATCCCGGCACATGAGTTAGGTGGAAGGGTCAGGTCCAACAGCACAGGAGTTTCCCAGACACGGGATGTGACTGACTCGCCCTAAAAGGACCAGTGGATTAATTTACAGCTCTTCTGGGAATGTGCACTAACTTACTCAACTACATTGCGATAAAGTGGCATCAATACTGCCTTTATCTACCAATGAAGCTCTTTGACAGAGAAACTGGACATATGGGCTCACAAAGATAATCTGTAAATAATTAGGACATACTGTAGCAGGGTCACACAAACATCGTTTTACTAAGAGGTAGGCCTTTAAAACTTGGTCCTTGTTGTTTTTAAATAGCTTTCTTGTTATAGTCCCTATCATTAAGATGGAGGCCATTTAATAAAGCactggaaggagggaggaaacTGAGAACTTTCCCCAGTGAGGGGGAGTATAttagagaggggagtgagaggaggggagaggatatGTCTGTTTGTGTTGGAATCAGTGGGCCTGTCAGACaacagagagaagaagggaaagtgaggaaagagacacagagagagaaagagagattccAAATGGATAGCATCTGGCAAAGGGACTCCAGACATTGTGTTAAAGCCTGGGAGGCAGCCAATGTGTAGCCCCATAATTTCTACATGGAGAACGTCTTTATAATCTCTGAACAAGACTGTCATAGAACTGTATTGTAGCTTATTGAACACACCAAATGTCTTATTTGAATGTACACTTATGAACCGTGACCATTTGGACTTATCAGTGCTCACTGGATGTAGTCGTGCACTTCTCAAAACGCTTTCAACACActattgtggtgtgtgtgtgcgtgcgtgagtgcccTGGATGTGAACATATCCTAGACGATGAAATCAAATTTTTACATGTGAATATTAGATTTCTTTGCTACTATTTCACTATTTATTTTATATAAGTAATGTATTGCTGTGTTATCATTAGTACAAGGCTACCCCAGAGAGGCACAAAGCACAGAGTTTAACTAAGAAATTGATGGAACAAAAGACGTGTAGGCAAAGTATAAATGTGTGTTAATACATTTTGTGTTCTATTATATGTGTACACATCCTGGGTAAACTGGTTTGTCTGGATAAAACCATAATTATAATGAAACAgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU667302 lncRNA upstream 16311 21680071 ~ 21721438 (+) True G585003
TU667262 lncRNA upstream 123147 21614296 ~ 21614602 (+) True G584969
TU667255 lncRNA upstream 135585 21601956 ~ 21602164 (+) True G584962
TU667253 lncRNA upstream 141315 21596224 ~ 21596434 (+) True G584960
TU667252 lncRNA upstream 142064 21595446 ~ 21595685 (+) True G584959
TU667060 lncRNA downstream 6354 21750354 ~ 21751526 (+) False LOC100136615
TU667062 lncRNA downstream 6354 21750354 ~ 21751526 (+) False LOC100136615
TU667067 lncRNA downstream 6354 21750354 ~ 21755034 (+) False LOC100136615
TU667070 lncRNA downstream 6354 21750354 ~ 21755090 (+) False LOC100136615
TU667072 lncRNA downstream 6354 21750354 ~ 21799872 (+) False LOC100136615
XM_021608813.2 mRNA upstream 42555 21689336 ~ 21695194 (+) False LOC110527501
XM_036982990.1 mRNA upstream 42555 21689386 ~ 21695194 (+) True LOC110527501
XM_036982982.1 mRNA upstream 241738 21454750 ~ 21496011 (+) False LOC110527497
XM_036981854.1 mRNA downstream 5340 21749340 ~ 21751525 (+) False LOC100136615
NM_001124601.1 mRNA downstream 6632 21750632 ~ 21751525 (+) False LOC100136615
XM_021608816.2 mRNA downstream 18128 21762128 ~ 21781536 (+) False LOC110527503
XM_021608817.2 mRNA downstream 18128 21762128 ~ 21790179 (+) True LOC110527503
XM_021608818.2 mRNA downstream 68987 21812987 ~ 21826025 (+) False sts
TU666895 other upstream 655134 21080828 ~ 21082615 (+) True G584643
TU665732 other upstream 1497952 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 1716022 20017855 ~ 20021727 (+) False LOC110528807
TU664011 other upstream 2760750 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 3244840 18492227 ~ 18492909 (+) True G580997
TU667948 other downstream 209029 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 612583 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 942489 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 957194 22701194 ~ 22703821 (+) True LOC110527523
TU669156 other downstream 1266061 23010061 ~ 23015120 (+) True G586685

Expression Profile