RNA id: XM_036982998.1


Basic Information

Item Value
RNA id XM_036982998.1
length 1876
RNA type mRNA
GC content 0.55
exon number 11
gene id sts
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 21812987 ~ 21826025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACATGTATATCCACGAAGTGTTCATTTGAAAAATGAAGTCCCCATGGATCCCATGCTGTCTAGGTTTACTGTTGTTGTTTGATGTGTGCTATGCCTTGAATGGTGACAAAAGGCCGAATTTTGTCCTGATGATGGTCGATGACTTGGGGATTGGAGACTTGGGCTGCTATGGGAACACAACCTTGCGGACCCCCAACATCGACATGCTGGCTCAGGAGGGGGTGAGGCTGACGCAGCACATCGCTGCGGCCCCCCTCTGTACGCCCAGCAGGGCagccttcctgacgggccgatACCCGATACGATCCGGTATGGCCGGCCTTGGACGGTTAGGGGTTTATATCATCTCTGCTGCATCTGGCGGTCTTCCCAGTGAAGAAGTCACCTTTGCCAAGATGGCCAAACAACAGGGCTACGAGACTGCTCTCATAGGAAAATGGCACCTTGGTCTTCACTGTGAGAGGAACGACGACTTCTGTCACCACCCCAGTGCTCACGGCTTCGACCACTTCTACGGTATAACCCTGACCAACCTACGTGACTGTCAGACCGGCCACGGCTCCATCTTTACCAATGTCCAAGCACACATACCATTCAAGACCCTGGGAGTGGGTGTGGCTACCGTGACCCTCCTGCACGCGAGGGGTGTGGTCACCGTGCGGAGGAAGTTGGTGCTGAGCGCGGTGGCGTTGGTGGGCGCGGCGGCGGCCATCTTTGGCACATTCGTCGCCACGTTCCCCTACTTCAACTGCTTTCTGATGAGGAACCGGGAAGTGGTGGAGCAGCCGTATGTCTCGGAGAACCTGACCCAGAGAATGACAGATGAAGCAGTGGACTTTTTAGAAAGGAACTCTGCACTACCCTTCCTGTTGTTCTTCTCCTTCATCCAAGTGCACACAGCCATGTTTGCATCGCCAGCCTTCCAGGGGACCAGTCAGCACGGTATCTATGGAGACGCTGTCCACGAAGTAGACTGGAGTGTAGGTCAGCTCATGCAGACTCTGGACCGGTTGAACCTGAGGGAGAACACACTGGTGTACCTGACCTCAGACCAGGGTGCACACCTTGAGGAGATCTCAGTCCGGGGGGAGGTGCACAGAGGCTGGAACGGGATATACAAAGCCGGGAAATCCACCAATTGGGAGGGGGGGATCCGAGTTCCAGGACTGCTCCGTTGGACTGGGATGTTACCTGCAGGGAAAGACATTGTTGAACCCACCAGCAACATGGACATCTTCCCTACTGTGGTGAAGCTAGCCGGAGGGACGGCACTGGGGGACAGAGTGATAGACGGTCATGACCTCATGCCCCTGCTGCAGGGGAAAGTTGAGAGATCAAAGCACGAGTTTCTCTTCCATTACTGTAACGCCTACCTCAACGCTGTCAGGTGGCAGCCTCCCAACAACCACACCCCTGACCCCAGACACGGAACCTGCTTTCCACTCGGTCCTGGAGAAGATCCTGGCCGCGGTGGCTCTCCATAAGGAGTCCATCACCCCCGTTCAGGACCAGCTCGCCCCGGGACACGTCCTATGGAAGCCCTGGTTGCAGCCCTGCTGCTCCTCCCTGTCCCAGCTCTGCAGGtgtgagagagatggtgggagacaCGGCCACCGGAGCACTGCAGCGGCAGAGGCAGACTCTCCACAGGACCAGCACATCATTGCTTAACACTGAGGGGAGGGTAACGTAGGAACCCAGAACCAATCTTTTAGTGGGTATGTAAACAATCTGTGACAAGAGACAACCGGCAGGGAAATGACCCCCATTTAAATGtttgatttaaccaggtaggccatttgagaacaagttctcatttacaactgcgacctggcattTTAACTGGGCTTGTGGGTAGAAGTGACTTGGATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU667367 lncRNA upstream 6718 21805889 ~ 21806302 (+) True G585063
TU667363 lncRNA upstream 10169 21802607 ~ 21802851 (+) True G585059
TU667063 lncRNA upstream 57884 21752803 ~ 21755136 (+) False LOC100136615
TU667069 lncRNA upstream 57930 21752803 ~ 21755090 (+) True LOC100136615
TU667075 lncRNA upstream 57986 21750916 ~ 21755034 (+) False LOC100136615
TU667406 lncRNA downstream 58991 21883877 ~ 21884502 (+) True G585102
TU667902 lncRNA downstream 86715 21911601 ~ 21911880 (+) True G585527
TU667904 lncRNA downstream 99193 21924079 ~ 21926933 (+) True G585529
TU667930 lncRNA downstream 115702 21940588 ~ 21940797 (+) True G585555
TU667933 lncRNA downstream 117045 21941931 ~ 21942171 (+) True G585558
XM_021608817.2 mRNA upstream 22841 21762128 ~ 21790179 (+) True LOC110527503
XM_021608816.2 mRNA upstream 31484 21762128 ~ 21781536 (+) False LOC110527503
XM_036981854.1 mRNA upstream 61495 21749340 ~ 21751525 (+) False LOC100136615
NM_001124601.1 mRNA upstream 61495 21750632 ~ 21751525 (+) False LOC100136615
XM_036982997.1 mRNA upstream 69020 21737749 ~ 21744000 (+) True LOC110527502
XM_021608824.2 mRNA downstream 465629 22290515 ~ 22311838 (+) False LOC110527508
XM_021608825.2 mRNA downstream 502685 22327571 ~ 22347037 (+) True mxra5a
XM_021608827.2 mRNA downstream 531614 22356500 ~ 22360232 (+) False c7h10orf53
XM_036983001.1 mRNA downstream 560984 22385870 ~ 22416150 (+) False LOC118936317
XM_021608840.2 mRNA downstream 567767 22392653 ~ 22416150 (+) False LOC118936317
TU666895 other upstream 730405 21080828 ~ 21082615 (+) True G584643
TU665732 other upstream 1573223 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 1791293 20017855 ~ 20021727 (+) False LOC110528807
TU664011 other upstream 2836021 18976678 ~ 18976999 (+) True G581976
TU662969 other upstream 3320111 18492227 ~ 18492909 (+) True G580997
TU667948 other downstream 128143 21953029 ~ 21953269 (+) True G585573
TU668464 other downstream 531697 22356583 ~ 22360227 (+) True c7h10orf53
TU668616 other downstream 861603 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 876308 22701194 ~ 22703821 (+) True LOC110527523
TU669156 other downstream 1185175 23010061 ~ 23015120 (+) True G586685

Expression Profile