RNA id: XM_021608821.2


Basic Information

Item Value
RNA id XM_021608821.2
length 6726
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110527506
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22089741 ~ 22163995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACCCTGGTCTTTCTATCCTTAAATCTCTCGTCTTTGCTGTCCGATCTCTCCTCGCTTTCTCTCTATTACGGCAATTAGATGCAGCACAATTGACCGTGCTACTACAACGACTCACTGAAATTACCTTATAGGCTATGCGTGTCATTAACAACCGGAAAGCTCAATTTTTATTTTCTGCCTAGAACCTGAAGCGGAGTTTGACTTGTTTTTATCTGGACCCCACTGTCACGTTGGGATTTTCAGAGGAGCGCACACTGTGGAGTTTTATTTTTTGCCCGTGTGGTGGTGTATATTTTATTATCACATCCCTTGAAGTCAGGACTACGAGCTAAATTCACACAGTTGGAATACCGCAAAGGGTAACCAACCAAGCTGGAACTGGGTCGACGAGCAAAGACATCTGGAGACAAATACAGGCACTGCACCCCCGACCAATGACCTACACGTAGACCCACTCTCTTGGGATGGGGGGCACCGAGTTGCACAAAACTGCTCTGATTGGCTGGAGCTCTGTCTGTCAGCTGTCAATCACAGCCTGAGGAGCAGGTTATTGGTCtgggttgttgtggggggtgGGAGAGGAGTACCGGGAACTTCCAGGACCACAATCTGCTTGGCTGAGTGCAGCAGGAGCATGTTGAGGGGAGCCAGGCCAGGGGGAACCAGTACCTCTCCATTGAGCTCTGGAGGAGCCACTATAGCCCATGGAATGGGGATGGTCTACCTATCCAAGGTCTACCTTCTCTTATGGATTGGCTTCCTGTTAGCGTCTGTGTGTCTGCCGGTCGTGGCTCAGACCCCAGTCCACCCTGTTGTCACCACGAATTATGGGAAGCTGCGAGGGTTAAAGACGACACTGCCCAATGAGATCCTAGGGCCCGTGGAGCAGTACTTGGGGATCCCGTACGCTTTGGCCCCTACAGGGGAGAGACGCTTCCAGCCCCCTGAGCCTCCCATGTCCTGGCCTGGGATCAGGAATGCTACCCAGTTCGCCTCTGTGTGTCCACAGTACCTGGAGGAAAAGTTACTCAACGACATGCTGCCGGTGTGGTTCACAGCCAACTTGGATACAGTGGTAACCTATATGCAGGATCAGAACGAGGACTGCCTGTACCTAAACATTTACGTGCCAACTGAGGATGACATCCATGATGAGAACGGGCTGAAGCCGGTCATGGTGTACATCCATGGTGGATCCTACATGGAGGGAACGGGGAACATGATCGATGGGAGTATCCTGGCGAGCTACGGAAACGTCATCGTAATCACCATAAACTACAGGCTCGGAGTGTTAGGCTTCCTAAGCACAGGGGACCAGGCAGCCAAGGGGAACTATGGACTGCTGGACCAGATCCAAGCCCTGAGGTGGATCAAAGAGAACATTCAGGCCTTCAAAGGAGATCCAAAGAGAGTGACAATCTTCGGCTCTGGTGCAGGGGCATCGTGTGTTAGCTTGCTCACGCTCTCTCACTACTCAGAAGATCTCTTCCAGAAAGCCATCATCCAGAGTGGTACAGCTCTGTCCAGCTGGGCGGTTAACTACCAGCCTGCCAAGTACACACGGATGCTGGCTGAGAAGGTGGGCTGCAACATGCTGGACACCATCGACCTGGTGGAGTGTCTCCAGAGCAAGAACTACAAGGAGCTGATCGAACAGAACATCTTACCCGCAAAGTACCACATCGCCTTTGGCCCCGTCATCGACGGCGACGTCATCCCGGACGACCCCCAGATCCTCATGGAGCAGGGCGAGTTCCTCAACTACGACATCATGCTGGGGGTCAACCAAGGCGAAGGGTTCAAGTTTGTGGAGGGCAGCGTGGACAGCGAGGACGGCGTCTCGGCCAACGACTTCGACTTTGCCGTGTCGGACTTTGTGGATCACCTCTACGGCTACCCGGAGGGCAAGGACACGCTAAGGGAGACCATTAAGTTCATGTACACTGACTGGGCCGACAAGGAGAACCCCGAGACAAGGAGGAAGACGTTAGTCGCACTCTTCACCGACCACCAGTGGGTGGCGCCGGCCGTAGCCACAGCGGACCTCCATGCCCAGTATGGTTCGCCGACGTATTTTTACGCCTTCTACCACCACTGCCAGAGCGACATGAAGCCTAGCTGGGCTGACTCGGCACATGGAGACGAGGTGCCCTATGTGTTCGGGATCCCAATGATCGGACCCACGGACCTGTTCAACTGCAACTTTTCCAAGAACGACGTCATGCTCAGCGCGGTTGTTATGACTTACTGGACTAACTTTGCCAAGACAGGAGATCCAAACCAGCCCGTTCCTCAGGACACCAAGTTCATCCATACAAAACCCAACCGCTTTGAAGAGGTTGCCTGGTCGAAGTACAACCCCAAGGACCAGCTCTACCTGCACATCGGCCTGAAACCCAGGGTCAGGGACCACTACCGGGCCACTAAGGTAGCCTTCTGGCTGGAACTAGTTCCACACCTCCACAACATAAATGAGTTGTTCCAGTATGTATCCACAACGACCAAGATACCGCCGCAGGACACCACTCCGTTTCCTTACACCAAGCGTTTCCCGGGGAATCGGCCTTCTACCACCCGCCACCCTGGGGTTCCCTCCGCTAACACCAAGCAGACCACCGACCAGCGGAAAGGTGAGGACCTCACCGACGAATCAGCCGTGGTTATCGAGACTAAACGGGACTATTCCACGGAGCTGAGCGTCACCATCGCCGTGGGAGCCTCGCTGCTCTTCCTCAACATCCTGGCGTTCGCCGCGCTCTACTACAAGAAGGACAAGCGGCGGCATGAGTCAAACCGGCGCGGGCCAAGCCCACAGCGTATCTCCGCCGGGCCGGCCAACGCGGCGGTCTGCGCCAATGACATCGCCCACCTGCAGAGCGAGGAGCTGATGTCCCTGCAgatgaagcagcagcagcagacggATCATGAGCACCACCACGAGTGTGAGTCGCTCCAGGCCCACGACGCGCTGCGCctcacctgcccgcccgactacaCCCTCACGCTGCGTAGGTCGCCAGACGACATCCCCCTCATGACGCCCAGCACCATAACCATGATCCCCAACTCGCTGGCCGCCATGCAGCCGCTTCACAACTTCAACACGTTTGGCGGCAGTCAGAACAGTACCAACCTGCCCCATGGACACTCCACCACCAGGGTATAGCTCAATGTGGAGAAGTCAAACGTCCATGTGGCCTGGCCTGTGTTGGACAAACACGGAGGAACGAGAGCAGAGTGACTGACTGTGTTTCACACAGAACTCGTCTCCGTGGACGAGATGTTATTTTGCTACCATGCCTTCTTGAACAGTATATATCAAAGTCAAATATGAACTTCTAATGACGTGTTTGAAAAGTGACTGTTACCATAGTAACGCCGTTTTCAGAGTGAAGCTTCTCGAATGAATCGAAGAGAGTTTTACCAAAAGATCAACACCTGAAGACAAGTGGAATAATCGGCTTTAGAATGCTtgaaaaaacaatacaaaacacaaaGGGTTACAGTGATGACAAGGATTACTCAAATATCTTTTTGTGCCATTTAAGTACATCAGAGGACGATAACACACAATTGTGCAGTGAAATACCACTCTACTGCATTGGTAAAGTATGACAGACTAGTCATGGGCACTGAATTTGAAACTACCCCCCAGCCTGAAATGTATTTATGAaaactttgtaaaaaaaaacaaaaaaacagtatATAGTTGTGAgtgaaaataaacaaaaaaagagAACTTTAAAGAACTTCTATTGTTGTTTGAGTTTAACTATGGCTTTTCCAAGCGTGTTCTTTCTGTTGAGGTGAGTGTAAATAAACAGTATCAGCCATtattcattttttgttgttgtattaaaATCTGTTTTCACAGCagcagatttaaaaaataaaaaaaaacactatccATTTTGGGAGAATACTGTGCATCGTCTAGACAACCATTATATTATCCCGTGTGTCCTTTGGATCCATTTCTGACACAACGCTAGTCCGGGAACTGCTTTATAAACTCCATTTTCAGACAGCATTCTGATTCTGTCTCAAAATGAGGTTCGATAGCTTGagtccattttttttttgtcacccGATTCATCTTGTTCTGCTTTTAATCGTTTTGTTtgtaggctttttttttttttaaacatttatgtcTAGCAGCAATCTCACCACTGCCTGAGCTTCAAATGTGACCAGAAATGTATTACTTAGAAAAAAAAGGCAGTGGATTTTGGTATCAATATTAGTTGGATATGTTTGTAAAGAAGTATATGTTAGATATTTCAAATTGTCATATGCTAGCAATATGTAAAGTATTGTGCCAGGCTTTTGATATGTTGGGTTACTACAACACAAGTGAATgaatgtaaataataataatgatacatGATATTATTAATAATAACAAGTATAAGTACAATATGAAGTCAACATTAACCCAAATTATTTCCGTTCTGCATCCTATTACCCAAAAAAAAACTAAAGCCAAGTCCATATAAAAAGGTTTATAATAATGCTACATTTGTAAAAtccatgaaataaaaatatatccttACCATTGGTCCATCAACTGTCAAGATACCAAGGGTTTTGATGTAGGATTTGAAATGATTTTAGTTTGTCTGATATTGTTTGCAGTTTTGCCTTAAGTGATAGATGATATTTCTGGCTGGACACCTGTATAAAGATTTTCTGCAGCATTTTTAATAAAATATCACAGTATTTTCTAAAGAAAAgcttcatggacatttttgtttttttaaatgtgagttTGTAAGAAATGTTGGATGATGCGCAGGATTTGGAACACGTGCTATTGAATAAGACCCCTTCTTCATTTGCTGTCTAACACAATGAAGCCATGCGTTTCCATATAAATGGATATACTGTGTCCTGTTGCAATTCCGTCCTCTACTCCTATTCACTTTGTGCAGAATCACTCCTCATGAACCTCATGAAGTTATCAATTTAGAGTTTATCAATTTAACAACCAACACTTTTAAAATGTTATATATCGGGATTTTGTAAATAGTTTAGCCGATCCAAATCCATTGACTTGCAGACTTGATAAATTGCCACTCTGCTCAGTAAGGGGAAAGAAAAAACTGGCACACGTATGAGCTGAATAGCCCAGTGTGTAGCTACATTGGGTTTGCAGGGTCTCTAGTGGTATTTGCATACAAAGGGTTTGCATCCTGTATGGTGTAAAATTGCTTTACAATGATGTCCCTCTTTCCTTCCCACGGGTCAATGTATTGATCTCTCTTCAAACTAACTTGACAGAAGGAAAATCTAAAAAAATGTTGCAATTCAATCCATTTTCTTTGCAGTTCCTGGGGCGAAGTAGATGTCTTTGACATTTGTAGACTTACAGTGTATAAGGCCCCGATGCAAGAGGTTGGGGGCGAAGAAAATGGTTGTCATTATGAGGCAGAAAAAAAAGTGCCAAGATCATTTAATATGTTGTCTTCCTTAGTTACATGATCTGTCTAGTCTGGTTCTGTCTCAAACTGCATGTCAAAATATATATCTTAAGACAACCAGTGAAAACACAGGACCATGCATGGAGTGTGTCTGTAGAGTAGACCAGGGCTCCGTCCCAAATTGGACCCTATtgcctttacagtgcactacttttgacaagagccctatggCCCTATAAAAAGagtagggtgtcattttggacacGCAACAGCTCTTCTTCTTAATTGGCATGTTGTTTATGCTAGGGGTAATGGGGTGGGGTTCACTGAGCATGAATACTCCAGACTCGACTGGAAGTTAATTAAGCCAGGCTACAGTGTTCCATCACTCAGCTCAGAGTCAGGCAGCTCAGCCTGGGACATGCTCAGCTCGGTCCCACCACCGTCTGTCATTCAAGTCCCTCGGCTCTCCAAGCAGCCATTACCGAGTGGTATCGATCGCCATGGTGACAAGGTAGCAAACCAAATAAAGAGTGGGCAGGAATGAGGGAGGAGTCTGACTCCCTACCATTGGGGAAGGGCCTAAAAGGGCCTACCATTGGGGAAGGCATAAAGTCCACTGTAACCAGCTTATAGCTCGCTAGTACACAGCCATTGCTACTACTACACCCTCCCTTCACATTATTGCTGTGTGGTGTTTTTCTTCCAACGATGCATTTAGATGCAGGTAAATACCTCTTGCATCGAAGTCAGTTGATTGCATTCCCTCCCTAGGTGGCAGGACCCTAATAGATGAATATGAAATCTTCTAAGCCAATATATATGCTGAACAGTTAAGTGGAGAGGAACTCTCATCTGTGTGTGGTGAAGACCTGACTGGCTGCCACGGTAATGATAATGGCCAAGAGAAAATTCCCCTTTGACttttttcatgatttttacttTGAGAAACATATTGTCCTCTTCTCACCTTCTCAGTACTTGTCAATAGTTTTTAAATCAGttgtgcagagagaaagagaaagagacatggaGCTATTTCAGTGGCAACAAAAATTGTATTTGAATTCCATAATGTCGATTTCATATTAGGATATTACATTAGAATGCCACAATTTAGTTTTTGTATTAGGATATTGAATTAGAATTCCATAATTTTGAATTTGTATTAAGATATTGCATTTGAATGTAAGACTTTGTAATGCACAAATGTAATAATTGAATTCATAAATTAAGCTTGAATGAATATTGCAATTCgttttaaaatgaaataaaaatgtgtGTCCCGTTTCACGAAGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU668121 lncRNA downstream 17713 22071750 ~ 22072028 (-) True G585745
TU667951 lncRNA downstream 134183 21955339 ~ 21955558 (-) True G585576
TU667932 lncRNA downstream 147826 21941598 ~ 21941915 (-) True G585557
TU667903 lncRNA downstream 175084 21914454 ~ 21914657 (-) True G585528
TU667793 lncRNA downstream 289868 21750307 ~ 21799873 (-) True G585425
TU668405 lncRNA upstream 115060 22279055 ~ 22279455 (-) True G586015
TU668414 lncRNA upstream 119551 22283546 ~ 22284025 (-) True G586024
TU668728 lncRNA upstream 124919 22288914 ~ 22289410 (-) True G586306
TU668735 lncRNA upstream 147371 22311366 ~ 22311538 (-) True G586313
TU668741 lncRNA upstream 148283 22312278 ~ 22312497 (-) True G586319
LOC118965269 mRNA downstream 258182 21829164 ~ 21831559 (-) True LOC118965269
XM_021610949.2 mRNA downstream 352818 21697817 ~ 21736923 (-) False LOC110528814
XM_021608823.2 mRNA upstream 49628 22213623 ~ 22230742 (-) True pudp
XM_036982999.1 mRNA upstream 198166 22362161 ~ 22368437 (-) False LOC110512351
XM_036983000.1 mRNA upstream 198166 22362161 ~ 22368437 (-) True LOC110512351
XM_021608833.2 mRNA upstream 204658 22368653 ~ 22384979 (-) False cd99
XM_021608830.2 mRNA upstream 204658 22368653 ~ 22384980 (-) False cd99
TU667595 other downstream 570868 21517395 ~ 21518873 (-) True LOC110527499
TU667558 other downstream 665156 21421454 ~ 21424585 (-) True G585240
TU666669 other downstream 1250405 20838488 ~ 20839336 (-) False LOC110527470
TU666686 other downstream 1311676 20772867 ~ 20778065 (-) True otos2
TU665792 other downstream 1839756 20215649 ~ 20249985 (-) True G583661
TU668853 other upstream 299213 22463208 ~ 22470518 (-) False G586414
TU668953 other upstream 446166 22610161 ~ 22620116 (-) True LOC110527522
TU669046 other upstream 644658 22808653 ~ 22812503 (-) True LOC110527529
TU669376 other upstream 920495 23084490 ~ 23087137 (-) True G586878
TU669359 other upstream 997899 23161894 ~ 23165209 (-) True LOC110527533

Expression Profile