RNA id: XM_021608840.2


Basic Information

Item Value
RNA id XM_021608840.2
length 3434
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC118936317
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22385870 ~ 22416150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAGGAATTTAGCGAGGCACAAGTGTGCAGAGTAGCACGGAATCCAAGGACTGAAACACACGGAGAGACCTGGCACAGATATGTGGCTACTGTCTTTCATTTTACCAATTTTGAGGTTGTATTTAGTGGGAGTTAAAGTTCTTCTGTATCAACTGTTCAACAAGTCTTTTACGTTACCAGTTTTGCCCACACAAAATGGAAGGGTTGCCATAGTGACGGGGGGTGCCCGAGGAATGGGTTATGAGACTGCAAGACACCTGGCCAGGCTTGGCATGCATGTGGTTATAGctggGAACTCTGAAGAGGAAGGCCTGCAAGCTGTGAAGAAGATCCACGAAGAGGGCAGCGAGGGGAAAGTGGAGTTTCTGTTCCTGCACCTGTGTTCCCTGAAGTCGGTACGGCAGTTTGTCCACAGGTTTAAAGCCAGGGCTCTACCACTTCACGTCCTTGTCAACAATGCCGGTGTCATGCTGGTTCCCGAAGGAACGGCCGAGGAGGGTTTCGAGCTGCACTTTGGTCTGAACTATCTAGGACACTTCCTGTTGACAAACCTCCTCCTGGACAAACTGAAGAGGTCTGGGAGACACGACGCCTGCTCCCGCGTCGTCACCATGTCCTCCGCCACACACTACGTTGGAAGACTCGATATGGAAGACCTACAGGGCAGgtccTGCTACAGTGCGCATGGTGCGTACTCTCAGAGTAAACTGGCTCTGGTTCTCTTCACGTACCATCTGCAGGAGAAGATAACAGCAGGAGGGTTCCCAGTAACATCCAACGCAGTAGACCCAGGCATGGTGGACACTGACCTGTACAACAACCTCTGCATTCCAGCCCAGGCAGCCAAGAAACCTGTTGCCAAAATGCTGTTTAGGACCCCAGCCGAGGGAGCGTCTACATCTATCCTGGCTGCCACTGCGTCGCAGCTGGAGGGGGTCGGAGGCTGCTACTTCTATAACGGGGAGAGAACTGAATCCGCTGACATTACTTACGATCACAACGTGAGGGCTGAGCTGTAGCAACAGAGCTGTGCGCTGGTTGGTCTTCGGGAGTCCTAGAGGAGGAACCAGGAACCATGATCTTAGAAGTATGCCAAGATCAGTGGCATGACACCTCCCTCCAGCGTCAACAACAACCAAGCTGCGTCCCAATTCTCAAGCCTTCCCTTCGGCcccaagtgtgcacttgttccctTCCCTTCATGGATTTAAAAGCACTGGTATAGGAAATATGGTGCAACTCCTTCTAGCCTAGGCtgacaccaatccaatgcttttaaattCATGGGGAGGAGAGCACAAGTGCATATTTTAGTAGTGTCGGGATACAGCCCAAGTCAGCCCCAGCCAGCACTACATACAGCGACAGCCTGTGGACTTAGGCTTCCTGATTACTTAGCAACATCTAGCTACAGCACAAACCTTGGTTGTGTTGCCTCTACAGTAACTGTCCTCTCTTGACCTCTGTCCTCATAGTACTGCGTAACACACCAGCAATGGAATCGACTCTTCAGCATTTCATATCTTCTAACATAGCTCCTCCTCCGCAACAACAGTTCTGAAGACACCCATTCTACCATGCGACAAGCTCTATTAAACACATGCTGAACTGCACATTGAGTGATGGAATTGATGTTTTTTATATTGCAATACAAGTTCTGCTGCCAAATGTATTAAGCTTTGGTCTGTAGCTCCCTCTTCTGGAATCGCAGATAACAAAACATTGAAGAACACAAAGAACAACATCGGAGCTACTAATATCTCTTCGAAACAGACCCATCTTTTTTTCTGTCTAAAATTGGACCCCCTGTCCATTCTTTTTCTCGTACTTGGACTCCCATCAGGGGCggactggccatctggcatttcgggtaaatgccagatgggctggtccatttttaTCCTAGTGGGCCTGtgtaaatctttttttttaaacaaaatgctcattatctggctaataatgggggccAAAAGGGAAAAAAATTATGTTGTGTTAGAATAATGCCAGAGGCCATTTCTGGTCCTAGTCCACCCCTGACTCCCATCAAGGACTGGACCAAATATCTGTAGATGTACTGCCTCATAGCTGTGATCAAAAATATCATATCAAATATGCTTTGGTGAAGGGCTAACAATGACCACCATGAGACTCAAACTTGGTTAGCCTTATTCCCGCTTAATTTGCACTTGCCTCATTTAATGCGTGTGTCCAATCCTTGTTGTTGTCGTCATCCAGGAAAAAAACTGACAACGAGCTTCCTCATAGTACAGTAGATGCCTTTGCCTTGTTTGACTTACTGTGCCCAGAGGGGATGTTCTGCCCTGCTATCTCCACTTCACTGTGACTGATGTGAAATGTTGTCGTGATTTTTGATGTCTCTGTGGCATACTGTGATGACAAAATGATGCTTATCTTTAAGTGTTCTGAAACAGTAATAACATGTTAATGGTTGGTGGATCGTATTTTCAGACACGCCATTCTCAGTCTTAGATTCTGAATCTTTAAATTACTGTAAGTGATTCTCATGATAAGAGGTCTCTAGTGTGGAGAGTTCTAACTTGGGCGCTGCCTGTAATTTGTGCTCGTGTTCGATGGCTGCTGGAATCACAAACACTTGCTATGACATCTTTTTTAATTGCGATGGTTAATAGGGACTGCACATCTTCATTTATCTAACTTCTTCTAGGTGTCTACAATCCATTGTAGGTGTGCGTGTCGAAATTCTCATACAGGATATCGTCGACgttttgtcttaggtgttttgtgttcaagtactgtatgtgtgtatgcatgcctaAGCAGTGTACGGTTCAGTTCTGTACATGCCCCAAGACAACAGTTATTCAATAACAACAGTGCCAATACTTACATGCTCTTTAGAATACTAATGTGGAAGGTTTGAAGAGAAGAGGACTCTCTTCCAAGCTTCCATCTGCTTTTGTTATGATACAACACGTGTTATGAGTCTAATGCTGGATAAAAGGCAGACATAAGAGACACCAAatgaaaatcaaattgtatttgtcacatgcgccgaatacgacAGGACCTTActgcgaaatgcttacttacaagcccttaaccaaccatgccgttttaagaaaataccaacaacaacaaaaaagtaagagaagaataacaaataataaacAGCGTAAACATTAGATATAATACATCCAAGGTGTAAACATTTCAGTAGGACATTTTCATCTGAAGTCATTCGGTTGTCCATTGTATTACCACAATCACTGTGAACGATGCCTTGTTTTCCAAGTTTTCTTTAGTTGTACTGTACTAATTAATTAAGTAGTTATTAATTTGAGTTTCAAGTCATTGAGTGATTCTTAGATGTGACTGTGTTGTCCTCACTCATGTCATAGAGAAGGATGTCCACATTGGACACAAATCTAAATAAAAATCTATTGTAAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU668473 lncRNA upstream 7719 22378382 ~ 22384934 (+) False G586080
TU668474 lncRNA upstream 7719 22378382 ~ 22384934 (+) True G586080
TU668471 lncRNA upstream 22490 22368673 ~ 22370163 (+) True G586079
TU668437 lncRNA upstream 43423 22317076 ~ 22349230 (+) True G586047
TU668435 lncRNA upstream 76280 22316145 ~ 22316373 (+) True G586045
TU668501 lncRNA downstream 27726 22443876 ~ 22444188 (+) True G586104
TU668502 lncRNA downstream 29807 22445957 ~ 22446265 (+) True G586105
TU668508 lncRNA downstream 36169 22452319 ~ 22452561 (+) True G586111
TU668483 lncRNA downstream 38937 22455087 ~ 22458177 (+) True G586086
TU668548 lncRNA downstream 109729 22525879 ~ 22526520 (+) True G586148
XM_021608827.2 mRNA upstream 32421 22356500 ~ 22360232 (+) False c7h10orf53
XM_021608825.2 mRNA upstream 45616 22327571 ~ 22347037 (+) True mxra5a
XM_021608824.2 mRNA upstream 80815 22290515 ~ 22311838 (+) False LOC110527508
XM_021608819.2 mRNA upstream 566628 21815880 ~ 21826025 (+) True sts
XM_036982998.1 mRNA upstream 567767 21813020 ~ 21824886 (+) False sts
XM_036983006.1 mRNA downstream 44160 22460310 ~ 22470522 (+) False LOC110527515
XM_021608838.2 mRNA downstream 44565 22460715 ~ 22470522 (+) False LOC110527515
XM_021608839.2 mRNA downstream 44571 22460721 ~ 22470522 (+) True LOC110527515
XR_005052552.1 mRNA downstream 204853 22621003 ~ 22633391 (+) False LOC110528815
XM_036983008.1 mRNA downstream 204853 22621003 ~ 22634558 (+) True LOC110528815
TU668464 other upstream 32426 22356583 ~ 22360227 (+) True c7h10orf53
TU667948 other upstream 439384 21953029 ~ 21953269 (+) True G585573
TU666895 other upstream 1310038 21080828 ~ 21082615 (+) True G584643
TU665732 other upstream 2152856 20238911 ~ 20239797 (+) True G583605
TU665478 other upstream 2370926 20017855 ~ 20021727 (+) False LOC110528807
TU668616 other downstream 270339 22686489 ~ 22687846 (+) False LOC110527523
TU668622 other downstream 285044 22701194 ~ 22703821 (+) True LOC110527523
TU669156 other downstream 593911 23010061 ~ 23015120 (+) True G586685
TU670005 other downstream 1195202 23611352 ~ 23621369 (+) False LOC110527540
TU670007 other downstream 1195202 23611352 ~ 23621369 (+) False LOC110527540

Expression Profile