RNA id: XM_021608841.2


Basic Information

Item Value
RNA id XM_021608841.2
length 4018
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC110527516
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22456193 ~ 22460210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaatcgATTTGAACAGCCATCCAACTAGGAATtccaactcttcctagagctctgactttccgaaCTTAAAATACAGACTTCAttatttgacctcgtatttttccgAGTTTCCGGGTGTTTTGAACCCTGCATTAATACCACAGATAGATATTGAGCCAGATATTAAACCGGAtttataaatgtgaagcatccggttggcgtttcctctcactaccaaatatgttAATGCAAGGAAGCCCAGTGACCGGCATGGTGAGAAGATGGAGTGAGATATATTTTGGCCAACATTCTGCTAATTTTCTaatcgatgaaacatttgatctccataAAGTTTTATGTTTCCGAAACTATAATCTATAACAAACAGAGTGGACTGCGTCTTTGCCAAAGTAAAACAAAAATGGGTTGTTTATAGGTGCGAATTCCCTTATTGCACAGGCGCATTCATAGAATGCGTTCCCTAAcaaaaatatgcaaataaatactAGAACGTGAGATTGAGATCTCAATAGCTAGTGCATGGCTCTTCCCATCTCCTTGCTTGTTCTACCCACCATGATTAATTtcctcccattggaaacgacagcctctggtctatcttgggttagttataaaaatctttgGTCTGACGTTCATTCATTACCCAAGGGTAACTATCTCCTCCTTTCTCTAATGTCTCTGTAGTGGATCGCTGTGACCATAGAAATAAAACGGATAGACAGGTCTGCTTGCAAAAGTGGGTCCTTCCTTACTCAACTCTGGGTGGGGTGACGGTTCTATTAATTTATATTCTGTATCAAAGAAGCACAAGGTTTGAGGATGATGTGATGAGACAACACCAACCAGGGCAGGTGAAAATCGTATTTATACGGGCTGATTAAACTCTAGCTAATTTATAAACATAAAAAGGAAGgtcttttttttaattttattttttagatcTGTAAGTGGTTTACCGTAGccttttaattaattaattttttaAATCAGTAATGGCGACCGAGTGCACCCAAGAAGCGGTTGTTCAATTTCTAATCGAGCGAGGAGGGAGAGTGAAAAATCAGATATTCATTGACTATTTCAAAGCTGTTTTCCCAGAAGACCCTGACCAGAAAGCAATTGTTCGGGAGAAATTCAAGGGATACGTGGACAACGTCGCATTTGTAAAGTTGGAGAATGGAGTGAAATGTGTATGTTTAAAAAAGAAGTATCGAGTTTCATTGAAGTATACAGTGGAAAAAGACAGCGAGTGCAATGGTAACGGGACAGGCACCTTATTGGAACAAGAGGACAGCGGTGCTGCTATATCAAAATCATATAAGAACTTGATAGAAGATTGTGCACCACAACTGCATCTGTCAGTATCATCTGCTGGGCATGTGCACTCTTGGGAAATCACTGCAAACGAAGAGGCACAAGACATTTCACTTGGCTCAGGTTACGGAACTGACAATGCCACGAGAGCGAGACCGCCTGACATTTCTGGAATTATTTTGGAAGGTAAAATTGTAGAAAGAGCTGCGTCAACAAGGTCTGTAGTTCAAAATAATAGTTTATCAGACAATATGGGAAATGCGTTAGGCATTGGTGGTAATGCAGAGCAGAAATTGACCAAGGGGGACATTCATTGCAACCGCACGACATTGCAACCGCATGACATACCGCAAATTGCAGTGATTGAGGCGTCACCTTTACCTACATCCGCGGATGGCTCTATGTTCCCCTTACCCATACGTCCATTTCCAACTAATGCACAGGACAGCCTGCTGTCCCGTCACCCTTCAACAGAGGACGGGGCAGACGAAAGCCAGTATTATGATTTTCAACAGAGCATATCTGGGAGTGACAGCTACACACCTAAAAGTAGCCGTAATAACTTTATTGAGCTCATGATGAACAGCTCCCTCCAGGTGCGACGCAGCATGGTGTTGAGGAACTCGGACTCCGCCTCTGTGGTTTCCTCTACTACAGACGAAGACGGTGCTTCAGTCACTCTGGACCCGTTGGAACACGAGTGGATGATGTGTGCATCCGACGGCCAATGGGAGAGTCTccaccctctcctttcctctgaaCCAAACCTTGTCATGAAGAAGGATTTTGTGACTGGGTTCACCTGCCTGCACTGGGCCGCAAAGCAGGGCAAACAAGAGCTGCTAGCGCTTCTCGTGAACTTTGCCAAACAACACACAGTGCCCATCAACATCAATGCCCGATCAAGTGCCGGCTACACGCCCCTACACCTAGCAGCAATGCACAACCAAGTTGAGGTGGTGAAGTTACTGGTAGGTGCCTATGACGCAGACTTAGAGGCCAGAGATTATAATGGGAAAAGGGCGTGTCAGTATCTTACAAACAGTGTGGCCGTTGATATCCGTGACATCATCGGGGCGGGTGTTGGCGGCGACTCGGACTCAGAGAACACAGACTATGGGGATGGGGGGCGTTGGAGGTTGTCTAAAGTTCTCCAGTCTAATCTGATGCCCCTCAAACTGCACAATCACAGCGAGGAGGACACAGGTGATGGAGTAGACCAGGCCAGACAGAAACCCTTGCTGAGGAAATCGTCCTTTAGCAAGATGAGGCCCAAACTCCAGAAGATCCGCTTCAGATCTTCGCAGATAGTTCACAGCACTTCGTTCCCAGCACACTGTGAGACAGAGGAGCTTAACGGGTCCAGGAAAAGCTCATTTAAATCCAGACCCATGTCAAATCTGTTTGGCTGAGGAATAGCCCCTAAATTCACTCGACAAAGAGCAAATCAACTACTACAGTGCAGAATGACTGACACAATGGGGTATAGTTTGATGTTACAAgtgtttatgttttttttttgtggcatAGGCCAAGTCTGGTGTTACACATACTTAAGGGTTTTCCTCTAGGCATTATATGAATATACTGAACTAACAGAATATGGTATTACATGATCTATTGAGTAACTGGCCAGATTGTCACCCCTGGTTAGGCTAAAAAATGTATGTGATGTATGTCTTATCATTCCGAAGTAGCCAAGTAGGTCTTATTGTTCGTCTGCTTGAACCCTTAGCGTACATGTAAAGCTGTCTGTAACCCACTGGGCAAAGATGTCATTTTAACATCTAGTTTTGGTTGAGTTGAACTAATTTGAATTCagtgtgaaatcaacaaaaaatgacacaatgtcattggatttaggttaaaagttgggtgattTAAAAAGATACGATTAACTTACATTGATTACTTTTTTTCAAAGCCAATCAGTTTCCCTCGTTGATTTGATGCCTTCATatttacttttttgttgttggttgAAATGACTTGGGAACCAGGTTGACTCGACCTGTTTTTGCCTAGTGGGAAGTGTTTAAACGTCAAGTTATTTCACCACATGGTAGAAACAATGTCATTGATTTCACAACGCTTGGGAACAATTCTATCTTATTACTGTCAGACTGTTATTCGTTTATTCTCCCTTTTATATTTACGTTGCTTAAAGCACTTTGATTTTAAACTGTTATTGATCCAGCTTTCCTGCGGTTGATGCCATTCAGTCCACCTGAAAGACTTTGAGATGGGAATTGACTTCCTCTTTGTGTTCAAGTGGACGATTGGAGGCCAACGAAAAGGCCTCTGGTCTTTTACGTCTGTAATCAGGGTCAGTAGAGGAGATTTCTGTGTCACAAGGTACGCGGTTGTAGAGTGCATGGTAGGCCGACTGTTTATAGTGATGAAAGATCAGGTTTCATTCCTATTCATGTTTAAAAAAGGTACATTTTTTTGACCTGATAGCTCCTTATTTTGAGTTGTCTAAGGTTGCAGTCGTCTGGTATCAAGTTGTAGGTTACCCTCTGTTCTGTTTTATATCAACAAGCTCAGGCTTGCCGACCCAGGAGAGCCTAGCTCAGCtgagagtgagcaagagagacTAGTGTACatttagtgccttcagaaagtgttcatactccttgacttattccacattttgttgcgttacagcctgaattcagaattgattaaatatatgtgTTTCtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU668847 lncRNA downstream 1369 22454261 ~ 22454824 (-) True G586411
TU668841 lncRNA downstream 10012 22445948 ~ 22446181 (-) True G586405
TU668825 lncRNA downstream 11670 22444286 ~ 22444523 (-) True G586392
TU668744 lncRNA downstream 139456 22316503 ~ 22316737 (-) True G586322
TU668741 lncRNA downstream 143696 22312278 ~ 22312497 (-) True G586319
TU668852 lncRNA upstream 4561 22464771 ~ 22465441 (-) True G586414
TU668834 lncRNA upstream 26074 22486284 ~ 22543581 (-) True G586398
TU668940 lncRNA upstream 104272 22564482 ~ 22605033 (-) True G586488
TU668978 lncRNA upstream 160789 22620999 ~ 22622509 (-) False G586522
TU668977 lncRNA upstream 161977 22622187 ~ 22624553 (-) True G586522
XM_021608829.2 mRNA downstream 71204 22368653 ~ 22384989 (-) True cd99
XM_021608828.2 mRNA downstream 71207 22368653 ~ 22384986 (-) False cd99
XM_021608832.2 mRNA downstream 71210 22368653 ~ 22384983 (-) False cd99
XM_021608831.2 mRNA downstream 71212 22368653 ~ 22384981 (-) False cd99
XM_021608830.2 mRNA downstream 71213 22368653 ~ 22384980 (-) False cd99
XM_036983003.1 mRNA upstream 10625 22470835 ~ 22478459 (-) False cep70
XM_036983004.1 mRNA upstream 10625 22470835 ~ 22478459 (-) False cep70
XM_021608845.2 mRNA upstream 10625 22470835 ~ 22478822 (-) False cep70
XM_021608846.2 mRNA upstream 10625 22470835 ~ 22478866 (-) False cep70
XM_021608844.2 mRNA upstream 10625 22470835 ~ 22478879 (-) False cep70
TU668281 other downstream 361854 22092812 ~ 22094339 (-) True LOC110527506
TU667595 other downstream 937320 21517395 ~ 21518873 (-) True LOC110527499
TU667558 other downstream 1031608 21421454 ~ 21424585 (-) True G585240
TU666669 other downstream 1616857 20838488 ~ 20839336 (-) False LOC110527470
TU666686 other downstream 1678128 20772867 ~ 20778065 (-) True otos2
TU668853 other upstream 2998 22463208 ~ 22470518 (-) False G586414
TU668953 other upstream 149951 22610161 ~ 22620116 (-) True LOC110527522
TU669046 other upstream 348443 22808653 ~ 22812503 (-) True LOC110527529
TU669376 other upstream 624280 23084490 ~ 23087137 (-) True G586878
TU669359 other upstream 701684 23161894 ~ 23165209 (-) True LOC110527533

Expression Profile