RNA id: TCONS_00034069


Basic Information

Item Value
RNA id TCONS_00034069
length 1566
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_017059
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 812012 ~ 823276 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgatcccagattgataaagggataaagccgacaagaaaatgaatgaatgtacttcACAGACAGTGTGAATAAGTGTGGATTCTTTGGAAAATTACGGCTGGTTCTCTTTAATTAGCGAATATTAGTTAATGGGCGGGGCGTTTGCGTGGAGGGCGTGGTTATTCTGTTTAACGTCTGATTACACTCGCCAGCGTTTAGCATCGATTTATCAATGGATTTTCTAGAAAAAAACGTTTTATTCGAGCTTCGTGCGACATTTATTAATAGCAACAAACCTCATATAAGTGTCTTATGCTAACTGTTGATTGAAGAACAAGAAGAATGGAGGGGAAATCTGCCTCGTGTCCTGAAGGAGTCGTGAGCTGGTACATCAGAACCTCCAGACTGGCTGTGGCTTTGGCTATTATCAAACTCAGGCCACCAGGAGGAGCCAGACAGTTCACTGAGTCTCTGGCTGAAAGACTCAAACGGCAGGATGAAAGCTGGAAGTCTAAAGCTGAAGGTCTTCATGAAGATCTGCTGCATCTCAGACAGGAGCTGCTGCTCACACGCACACTGCTGAACACGAGGAGCAGCGCTGGACAAGCACCTGCATTCACAGGTCAAGAGATTGCCAAAGTGCTCTCTCAGGATGACACACGGGAGGTCAACTCTGGCACTTTACAGACATGCCTGCCTCCGACCCCTCCAAACAGCCAGAAGGTTCCTCCGAAAGATCGGCAGTGGCGCCAGGACCACAGACTGACCAAACACGTGCAGTTCCTTCAGCGTCTGAGTGGCTTACGCAGCGGTTTCGAGGAGTCTCTGTGTCAGGATGGTGATGTGGTTTGGGATTCAGTAGTGCAGCTGCTGGATTGTGTGGTGGAGGACTTCAGGCAGGCGCACACTGGACAGCCTTTACGTCACCCAGAGCAGCTGCATAACGCCATTCAGGTGGTGGCACAGACCCTGAGTCCAGGAGGAGCACGCCAGGGGTTTCCAGTGCAGCACTTCAGCAGAGTGGAGGATCTGTTGAAGGAGATGGTCAACCTACTGCTAACCAACCAACAACTCAATGCGTTCTCAGTGCAGGACTCGCTGTCGGACTGTCTGCTGGCTCTGGGGGGAAACTGCTGTATCACCAGAACTCCACTCATTCAGCTCCTGATGTCTCAGATTATCCAGCTTGCACAGCAGCTAAGGGACGCCTGTGAGAAATCCAGAGAAGAGCATGAGCATCATCAGGTGGACTGGGTCTGCTATCAGAATTCCTTCTATCTGTTCTGGCTGCTGGAGCGTCTCGCACAGGACACAGATAACAGAGTGAACCAGGAGCTTGTGGTGCGGCTGGAAACTAAAGCGTTCCCGCTGGCGGATGAGTTTTCCCTCTTCTCTCTGTACATGTGGCGTATCGGGGGGCTCTTCAGGGCTGGAGACTCGTAAGCAGATGTGAGCTCACTGCTGTCATTCCCAGCATCTGCTTCTTTTTATGTTACATGTCTGGTCTTAAACAACCAGTAAAATAGTTAAAATGCTTTgctttactaataaaaaaatacctTTAGAGGTCTTATAGATGTCTCAAAC

Function

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0048477 oogenesis biological_process
GO:0042138 meiotic DNA double-strand break formation biological_process
GO:0007283 spermatogenesis biological_process
GO:0051321 meiotic cell cycle biological_process
GO:0007129 homologous chromosome pairing at meiosis biological_process
GO:0000800 lateral element cellular_component
GO:0005694 chromosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-211 Predicted to be involved in gamete generation and meiosis I cell cycle process. Predicted to act upstream of or within DNA recombination and meiotic cell cycle. Predicted to be located in chromosome. Predicted to be active in lateral element. Orthologous to human MEI4 (meiotic double-stranded break formation protein 4).

Ensembl:

ensembl_id ENSDART00000179299

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034068 lncRNA upstream 54943 753868 ~ 757069 (+) True XLOC_017058
TCONS_00036532 lncRNA upstream 129720 681847 ~ 682292 (+) False XLOC_017056
TCONS_00036534 lncRNA downstream 73629 896905 ~ 900380 (+) True XLOC_017061
TCONS_00036535 lncRNA downstream 377016 1200292 ~ 1203603 (+) False XLOC_017065
TCONS_00036536 lncRNA downstream 377016 1200292 ~ 1203802 (+) False XLOC_017065
TCONS_00036537 lncRNA downstream 377016 1200292 ~ 1203874 (+) False XLOC_017065
TCONS_00034075 lncRNA downstream 377090 1200366 ~ 1202182 (+) True XLOC_017065
TCONS_00034064 mRNA upstream 34793 715739 ~ 777219 (+) False XLOC_017058
TCONS_00034065 mRNA upstream 34793 733510 ~ 777219 (+) False XLOC_017058
TCONS_00034066 mRNA upstream 35931 733515 ~ 776081 (+) False XLOC_017058
TCONS_00034067 mRNA upstream 58082 733519 ~ 753930 (+) False XLOC_017058
TCONS_00034063 mRNA upstream 99442 710052 ~ 712570 (+) True XLOC_017057
TCONS_00034071 mRNA downstream 3183 826459 ~ 848068 (+) True XLOC_017060
TCONS_00034072 mRNA downstream 265382 1088658 ~ 1089603 (+) True XLOC_017062
TCONS_00034073 mRNA downstream 298182 1121458 ~ 1125395 (+) True XLOC_017063
TCONS_00034074 mRNA downstream 373110 1196386 ~ 1199009 (+) True XLOC_017064
TCONS_00034076 mRNA downstream 449250 1272526 ~ 1276175 (+) False XLOC_017066
TCONS_00034041 other upstream 493907 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034086 other downstream 562473 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034116 other downstream 2085275 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034146 other downstream 4251648 5074924 ~ 5075054 (+) True XLOC_017116
TCONS_00034147 other downstream 4283292 5106568 ~ 5112043 (+) False XLOC_017117
TCONS_00034151 other downstream 4600686 5423962 ~ 5424096 (+) True XLOC_017119

Expression Profile

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