RNA id: XM_021608852.2


Basic Information

Item Value
RNA id XM_021608852.2
length 1485
RNA type mRNA
GC content 0.47
exon number 6
gene id fam207a
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22563281 ~ 22587668 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAGGAAGAGGCGGAAATATAGTTTGCACGTAATTGTTTCCCCCGGTCACATATCATAGAGACGCACATTTTGTTGTCAAAAGATTTTCCACGTTGTTAGCTAGCTCGAGCATGAATGTGGCTTCGGAGACAGATCGTATCTTTATTGAACTCAGTAACTAAAAGGCAGTATGGTTGGAAAGATAAAGCGGGTCCGTGAAAAGCTTCATCAGGCTGCGGTTAAACTTGACAGTCCTCCGTCCGGTGGCGCAAGATCCACAGATTTAGAAAAGGCACCGATTCCAAGTGGTTCATTCATCTTCgatgtaaacaaaacaaacaatgcACAGTTGCAGATAAAGAAGGATGAAAACGCGAAGACCCCACTGAGTTCCTTTCCAAGTGGAATCTTTGCTGGCACACAAATCAGCCCTGAAGCCCTCGTGCAAACTCTGAAGTTTGAAGAACCATCCAATGACATTGTTACACCTGCACAGAAAGCCCCGGAGGAGAAGAAGCAGCAGACGAAGAAAGAGAAGATGAAGGAGAGGCGAGACAGGTGGCTTAACAAGATCAGCTCCATCAAGCTGGCCAAGGAGCAACAAGTGGCCCAGGCTAAGAGGGCAGCCATGCCCGTTGTGGGTGACATGAGGCCGCTGGCAGACGCCCTGCCAGAACTCTGCCAGCTCATCCCCTCCACCACCAAGACCTCCAGAAAGGCCTCCCGAAAGAACCGTGTGCCAGTGAAGAAGAAGCCGGAACCAACAGACTTTAGCCTGATGAAGCCAGCACAAAAACGCAAACTCCTGGAGAGTGAGACCAGTCGGTTTAGTGAAGCTGTGAAGAACCTGGCACACAGCAAGACTAACCCTCTGGCAGCTATTGGTGAGCATCTGAGGAAGAGACTGAAGCAGGAAGAGGAGCAGGGGCCTAGCTAACGTGTTCGACTGGAGGCGCCATTTGGATCTGCAGTAGAgcagagacgggggggggggggtcgtgttTGAGATCGACTACGCTGCAGTTGGCAactgcagactgactgactgatctaaaAATAACCTtgcatcctatataactacttaATATTATTTGTCGATCAGTCATGAATTGATGCTTTCAACCACGGATATGGCACAAGAAAGACCCTGCCTTTTGTTTAAGGGTGATGCCTGCATCCCTGTGCCCAATCTACCAAACCTGCCAAAATCAATGGGCTCTTTTTTGATTGAAGTGGTTTTGGTCATTGTGCACTATACCAGTAAAACATCAGAGGACTTACAGGTTGTCTGAGTAACGGCAAAGTTCACAACGCCTAATTAGATCATGCCCCCAGTTCTATAGAAGTTGAAAATGAATAGTTACGTTTGtggatgaggggaaaaacaaacTGATGTTGTAAATGTAAAGAATAGATCTGTCATCAAAACGTCTCCTTTCAATTTGCGTACAGTATCTCTTCCACGTTTTATTTTTAAGCAATATTAAAAATGCAATACAGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU668834 lncRNA downstream 19700 22486284 ~ 22543581 (-) True G586398
TU668852 lncRNA downstream 97840 22464771 ~ 22465441 (-) True G586414
TU668847 lncRNA downstream 108457 22454261 ~ 22454824 (-) True G586411
TU668841 lncRNA downstream 117100 22445948 ~ 22446181 (-) True G586405
TU668825 lncRNA downstream 118758 22444286 ~ 22444523 (-) True G586392
TU668978 lncRNA upstream 33331 22620999 ~ 22622509 (-) False G586522
TU668977 lncRNA upstream 34519 22622187 ~ 22624553 (-) True G586522
TU668995 lncRNA upstream 97897 22685565 ~ 22685824 (-) True G586539
TU669000 lncRNA upstream 100031 22687699 ~ 22703875 (-) True G586541
TU669004 lncRNA upstream 104013 22691681 ~ 22692118 (-) True G586543
XM_021608847.2 mRNA downstream 48108 22487885 ~ 22515173 (-) True LOC110527519
XM_021608843.2 mRNA downstream 84391 22470835 ~ 22478890 (-) True cep70
XM_021608844.2 mRNA downstream 84402 22470835 ~ 22478879 (-) False cep70
XM_021608846.2 mRNA downstream 84415 22470835 ~ 22478866 (-) False cep70
XM_021608845.2 mRNA downstream 84459 22470835 ~ 22478822 (-) False cep70
XM_021608849.2 mRNA upstream 178 22587846 ~ 22609469 (-) False plcd4a
XM_021608850.2 mRNA upstream 178 22587846 ~ 22609469 (-) True plcd4a
XM_021608853.2 mRNA upstream 22216 22609884 ~ 22620248 (-) False LOC110527522
XM_021608854.2 mRNA upstream 22222 22609890 ~ 22620241 (-) False LOC110527522
XM_021608237.2 mRNA upstream 50422 22638090 ~ 22668102 (-) False stat1-2
TU668853 other downstream 92763 22463208 ~ 22470518 (-) False G586414
TU668281 other downstream 468942 22092812 ~ 22094339 (-) True LOC110527506
TU667595 other downstream 1044408 21517395 ~ 21518873 (-) True LOC110527499
TU667558 other downstream 1138696 21421454 ~ 21424585 (-) True G585240
TU666669 other downstream 1723945 20838488 ~ 20839336 (-) False LOC110527470
TU668953 other upstream 22493 22610161 ~ 22620116 (-) True LOC110527522
TU669046 other upstream 220985 22808653 ~ 22812503 (-) True LOC110527529
TU669376 other upstream 496822 23084490 ~ 23087137 (-) True G586878
TU669359 other upstream 574226 23161894 ~ 23165209 (-) True LOC110527533
TU669777 other upstream 787344 23375012 ~ 23377701 (-) True G587242

Expression Profile