RNA id: XM_021608853.2


Basic Information

Item Value
RNA id XM_021608853.2
length 2434
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110527522
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22609884 ~ 22620248 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCAATGTCCAACAAGTGCTTAATATTGAAGTCTGGTCCAAAACAGAAAAAGGCGGAAATAGTCACGAAACTTTCCCAGCGGATCACTTGAGGCACGTCTGAGTTGAAAGGTTGAACGCAGTTGCGCTCTCGCGAGATTCGTTGTCTGTTTTCACAACAGaaacatatttttatattttacgAAACGTTTTTCTAAAATATCCAAGCGCTGCATAGAATGCTGGCTACAGGAGCAGCTGTAACCACGGCTCTGGCCCAAGTGGATAGGGAAAAGATCTACCAGTGGATCAACGAGCTGTCCAGCCCAGAGACCCGCGAGAATGCCCTGCTCGAGCTCAGTAAAAAACGGGAGTCCGTGCCAGATTTGGCTCCAATGCTATGGCACTCCTGTGGGACTATAGCTGCTCTCCTGCAGGAAATAGTCAACATCTACCCCTCAATAAACCCCCCAACCCTCACCGCTCACCAGTCCAACAGAGTATGCAATGCATTAGCACTTCTGCAATGCGTGGCCTCTCATCCAGAGACAAGATCGGCATTTCTGGCAGCACACATTCCTCTATTCCTGTACCCCTTTTTACACACTGTCAGCAAAACACGACCATTTGAGTACCTCCGACTCACCAGCCTAGGAGTCATCGGTGCCTTGGTCAAAACAGATGAGCAGGAAGTGATCAACTTCCTGTTGACGACAGAAATCATTCCCCTGTGCCTTCGCATAATGGAGTCTGGCAGTGAGCTTTCCAAAACGGTAGCAACTTTTATACTACAGAAAATCCTACTTGATGACACAGGGCTGGCATACATTTGCCAAACGTATGAACGCTTCTCCCATGTGGCCATGATACTTGGCAAAATGGTTCTTCAGCTCTCCAAAGAGCCCTCTGCTCGTCTTTTGAAACATGTTGTCCGCTGTTACCTACGCCTGTCAGACAACTCCAGCCCCCACACCAGAGCCCGAGAGGCCCTCCGTCAGTGTCTACCAGACCAGCTTAAAGATACCACGTTTGCCCAGGTCTTGAAAGACGACACCACCACCAAACGCTGGTTGGCACAGCTGGTGAAGAACTTACAGGAAGGCCAAGTCACAGACCCCAGGGGCATCCCTCTGCCCGCACAGTAGCTCTCCTCACTTCTCCAGCAGGGTTGCACAATTATGGTAACTTTCCCATGATTCCCAGGTTTACGAAGACTTTCCTGGAATCCGTGTGGAATAATCAGAAAATCTGGGAATTTTCCAAATGGGATTTATGTCAAACCTGGGTATTTTGccaaagttactggaattttgcaaccctacttacCATGCAGCTGCACTGAGTGATACCCACCAGCAAGGACCCAGCTTCCAGAAATAGGAAAAAGCCACCAGTTTGAATGACAGACGGTCTCATAAAGGGCTGCATATTTTGTGAAGAAAGACTCTATTGAATGAAAGACCTCTACTCAGCCGTTTTCTCACGGTATCTTTCATTCGGATCAAACTGTCTGCCCTATCTCCAGCAGTATATGGATGCGTTTTCACTTGTCCTCAAACTATTAGttctatatttttttctcaaGGAAATTTTGGAGTCTTCACTAAGTGTTCTGAGATTGAAGTGTACGACAGAGTAAAATGTTACACCTTGACGTATGCGATACTGTTTATGTGACATACTTTCTCTTGTGTAATAACATATTACAAAGTAACTGCTTTGTGGTTACATGCATGTGTTATAGATATGCACATCTCAAATGGGCTAGTGAATGAAAATCAACTGAAATCAAGCTGCTCCTGTGTTGTGTATATTACAGAGGTTGCTGCAAGGTAAACGTGTTGGCGTGCTTCAGTGTTAACAGATAAGGGACCCCCCCCCCATTTGAGCCTTGGCCCTGTCTATCTATGTGAAACCTGAGCTGCTGCAGTGTATTATTGATGCTCTGGAACCTGAGTGGAGACTCGGTCAGAAAAAATAAGTTGTTCTCAGTGCTAAACTGTAGAGGTAACTCCGGCCTCAACACAGCCTTGTTCTCTGTCAGTGgcaaagcaggtagcctagtggttagagctttgggccagtaactgaaaggttgctcggtcgaatccctgagctgacaaggtataagtctgtcattctgcccgtgaacaaggcagttaacccactgttccctggtaggctgtcattgtaaataagaatttgttcttaactgacttgcctagttaaataaaggtaaaaaacaacatttgagtaATGCCTCTTCTCTTTAAACTCTCCTCCTCTGACCTGGCTTATTCATAATTTATAAAAACACTGACCTGATGTGCCAAGTGTGAGTGTACTGCATCTTTGATGAGTACGGTGTCTCCCTTTAGGTAATTGTCCCCTGTTCACTTGGGCTCATTGCAGCAGGTTTAGTTGTCTTTATCTTGAACAAATCCCAAATCATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU668940 lncRNA downstream 4851 22564482 ~ 22605033 (-) True G586488
TU668834 lncRNA downstream 66303 22486284 ~ 22543581 (-) True G586398
TU668852 lncRNA downstream 144443 22464771 ~ 22465441 (-) True G586414
TU668847 lncRNA downstream 155060 22454261 ~ 22454824 (-) True G586411
TU668841 lncRNA downstream 163703 22445948 ~ 22446181 (-) True G586405
TU668978 lncRNA upstream 751 22620999 ~ 22622509 (-) False G586522
TU668977 lncRNA upstream 1939 22622187 ~ 22624553 (-) True G586522
TU668995 lncRNA upstream 65317 22685565 ~ 22685824 (-) True G586539
TU669000 lncRNA upstream 67451 22687699 ~ 22703875 (-) True G586541
TU669004 lncRNA upstream 71433 22691681 ~ 22692118 (-) True G586543
XM_021608849.2 mRNA downstream 415 22587846 ~ 22609469 (-) False plcd4a
XM_021608850.2 mRNA downstream 415 22587846 ~ 22609469 (-) True plcd4a
XM_021608852.2 mRNA downstream 22216 22563281 ~ 22587668 (-) True fam207a
XM_021608851.2 mRNA downstream 22236 22563281 ~ 22587648 (-) False fam207a
XM_021608847.2 mRNA downstream 94711 22487885 ~ 22515173 (-) True LOC110527519
XM_021608237.2 mRNA upstream 17842 22638090 ~ 22668102 (-) False stat1-2
NM_001124746.1 mRNA upstream 18224 22638472 ~ 22657391 (-) True stat1-2
NM_001124576.1 mRNA upstream 58200 22678448 ~ 22679952 (-) True mstn2a
XM_021608856.2 mRNA upstream 105031 22725279 ~ 22746080 (-) False glsa
XM_021608859.2 mRNA upstream 106712 22726960 ~ 22735701 (-) False glsa
TU668853 other downstream 139366 22463208 ~ 22470518 (-) False G586414
TU668281 other downstream 515545 22092812 ~ 22094339 (-) True LOC110527506
TU667595 other downstream 1091011 21517395 ~ 21518873 (-) True LOC110527499
TU667558 other downstream 1185299 21421454 ~ 21424585 (-) True G585240
TU666669 other downstream 1770548 20838488 ~ 20839336 (-) False LOC110527470
TU669046 other upstream 188405 22808653 ~ 22812503 (-) True LOC110527529
TU669376 other upstream 464242 23084490 ~ 23087137 (-) True G586878
TU669359 other upstream 541646 23161894 ~ 23165209 (-) True LOC110527533
TU669777 other upstream 754764 23375012 ~ 23377701 (-) True G587242
TU671692 other upstream 2208240 24828488 ~ 24828700 (-) True G588987

Expression Profile