RNA id: TU668953


Basic Information

Item Value
RNA id TU668953
length 2128
RNA type TUCP
GC content 0.46
exon number 7
gene id LOC110527522
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22609884 ~ 22620248 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGAGATTCGTTGTCTGTTTTCACAACAGaaacatatttttatattttacgAAACGTTTTTCTAAAATATCCAAGCGCTGCATAGAATGCTGGCTACAGGAGCAGCTGTAACCACGGCTCTGGCCCAAGTGGATAGGGAAAAGATCTACCAGTGGATCAACGAGCTGTCCAGCCCAGAGACCCGCGAGAATGCCCTGCTCGAGCTCAGTAAAAAACGGGAGTCCGTGCCAGATTTGGCTCCAATGCTATGGCACTCCTGTGGGACTATAGCTGCTCTCCTGCAGGTAAGATTGTGGACGACACTAACTGGCCAGTCTCCAGCAAGATGGAGCATGGTTTTCCTCTGTGAGTGTGGCTCTAAACTTGATGATGACCCGCTTCATACTCTTTCATAAATAGGAAATAGTCAACATCTACCCCTCAATAAACCCCCCAACCCTCACCGCTCACCAGTCCAACAGAGTATGCAATGCATTAGCACTTCTGCAATGCGTGGCCTCTCATCCAGAGACAAGATCGGCATTTCTGGCAGCACACATTCCTCTATTCCTGTACCCCTTTTTACACACTGTCAGCAAAACACGACCATTTGAGTACCTCCGACTCACCAGCCTAGGAGTCATCGGTGCCTTGGTCAAAACAGATGAGCAGGAAGTGATCAACTTCCTGTTGACGACAGAAATCATTCCCCTGTGCCTTCGCATAATGGAGTCTGGCAGTGAGCTTTCCAAAACGGTAGCAACTTTTATACTACAGAAAATCCTACTTGATGACACAGGGCTGGCATACATTTGCCAAACGTATGAACGCTTCTCCCATGTGGCCATGATACTTGGCAAAATGGTTCTTCAGCTCTCCAAAGAGCCCTCTGCTCGTCTTTTGAAACATGTTGTCCGCTGTTACCTACGCCTGTCAGACAACTCCAGAGCCCGAGAGGCCCTCCGTCAGTGTCTACCAGACCAGCTTAAAGATACCACGTTTGCCCAGGTCTTGAAAGACGACACCACCACCAAACGCTGGTTGGCACAGCTGGTGAAGAACTTACAGGAAGGCCAAGTCACAGACCCCAGGGGCATCCCTCTGCCCGCACAGTAGCTCTCCTCACTTCTCCAGCAGGGTTGCACAATTATGGTAACTTTCCCATGATTCCCAGGTTTACGAAGACTTTCCTGGAATCCGTGTGGAATAATCAGAAAATCTGGGAATTTTCCAAATGGGATTTATGTCAAACCTGGGTATTTTGccaaagttactggaattttgcaaccctacttacCATGCAGCTGCACTGAGTGATACCCACCAGCAAGGACCCAGCTTCCAGAAATAGGAAAAAGCCACCAGTTTGAATGACAGACGGTCTCATAAAGGGCTGCATATTTTGTGAAGAAAGACTCTATTGAATGAAAGACCTCTACTCAGCCGTTTTCTCACGGTATCTTTCATTCGGATCAAACTGTCTGCCCTATCTCCAGCAGTATATGGATGCGTTTTCACTTGTCCTCAAACTATTAGttctatatttttttctcaaGGAAATTTTGGAGTCTTCACTAAGTGTTCTGAGATTGAAGTGTACGACAGAGTAAAATGTTACACCTTGACGTATGCGATACTGTTTATGTGACATACTTTCTCTTGTGTAATAACATATTACAAAGTAACTGCTTTGTGGTTACATGCATGTGTTATAGATATGCACATCTCAAATGGGCTAGTGAATGAAAATCAACTGAAATCAAGCTGCTCCTGTGTTGTGTATATTACAGAGGTTGCTGCAAGGTAAACGTGTTGGCGTGCTTCAGTGTTAACAGATAAGGGACCCCCCCCCCATTTGAGCCTTGGCCCTGTCTATCTATGTGAAACCTGAGCTGCTGCAGTGTATTATTGATGCTCTGGAACCTGAGTGGAGACTCGGTCAGAAAAAATAAGTTGTTCTCAGTGCTAAACTGTAGAGGTAACTCCGGCCTCAACACAGCCTTGTTCTCTGTCAGTGgcaaagcaggtagcctagtggttagagctttgggccagtaactgaaaggttgctcggtcgaatccctgagctgacaaggtataagtctgtcattctgcccgtgaacaaggcagttaacccactgttccctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU668940 lncRNA downstream 5128 22564482 ~ 22605033 (-) True G586488
TU668834 lncRNA downstream 66580 22486284 ~ 22543581 (-) True G586398
TU668852 lncRNA downstream 144720 22464771 ~ 22465441 (-) True G586414
TU668847 lncRNA downstream 155337 22454261 ~ 22454824 (-) True G586411
TU668841 lncRNA downstream 163980 22445948 ~ 22446181 (-) True G586405
TU668978 lncRNA upstream 883 22620999 ~ 22622509 (-) False G586522
TU668977 lncRNA upstream 2071 22622187 ~ 22624553 (-) True G586522
TU668995 lncRNA upstream 65449 22685565 ~ 22685824 (-) True G586539
TU669000 lncRNA upstream 67583 22687699 ~ 22703875 (-) True G586541
TU669004 lncRNA upstream 71565 22691681 ~ 22692118 (-) True G586543
XM_021608849.2 mRNA downstream 692 22587846 ~ 22609469 (-) False plcd4a
XM_021608850.2 mRNA downstream 692 22587846 ~ 22609469 (-) True plcd4a
XM_021608852.2 mRNA downstream 22493 22563281 ~ 22587668 (-) True fam207a
XM_021608851.2 mRNA downstream 22513 22563281 ~ 22587648 (-) False fam207a
XM_021608847.2 mRNA downstream 94988 22487885 ~ 22515173 (-) True LOC110527519
XM_021608237.2 mRNA upstream 17974 22638090 ~ 22668102 (-) False stat1-2
NM_001124746.1 mRNA upstream 18356 22638472 ~ 22657391 (-) True stat1-2
NM_001124576.1 mRNA upstream 58332 22678448 ~ 22679952 (-) True mstn2a
XM_021608856.2 mRNA upstream 105163 22725279 ~ 22746080 (-) False glsa
XM_021608859.2 mRNA upstream 106844 22726960 ~ 22735701 (-) False glsa
TU668853 other downstream 139643 22463208 ~ 22470518 (-) False G586414
TU668281 other downstream 515822 22092812 ~ 22094339 (-) True LOC110527506
TU667595 other downstream 1091288 21517395 ~ 21518873 (-) True LOC110527499
TU667558 other downstream 1185576 21421454 ~ 21424585 (-) True G585240
TU666669 other downstream 1770825 20838488 ~ 20839336 (-) False LOC110527470
TU669046 other upstream 188537 22808653 ~ 22812503 (-) True LOC110527529
TU669376 other upstream 464374 23084490 ~ 23087137 (-) True G586878
TU669359 other upstream 541778 23161894 ~ 23165209 (-) True LOC110527533
TU669777 other upstream 754896 23375012 ~ 23377701 (-) True G587242
TU671692 other upstream 2208372 24828488 ~ 24828700 (-) True G588987

Expression Profile