RNA id: XM_021608858.2


Basic Information

Item Value
RNA id XM_021608858.2
length 2309
RNA type mRNA
GC content 0.51
exon number 17
gene id glsa
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22725279 ~ 22746080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTAGAACACATTTGAGAATCGTGACTCACTGACTGAACCGTTCTTTACGACCGACACCCAACGCATTTGGAATATATTACTAAACATTTATTATATATCTAGCTAGCTGAGTTATAAACAGCGCCACGATTTAGCTTGATAGGATTGACATGTTACATTTTCGGTCTTCGGTAGTGCTCAAGGAGTTGTTTCAATCTAACCTGAAGCGCCCTTTGACAGGTATCGCCAGAAAGACATCACCATCAGTCGCGTATTGCTTTAGCATCGCCTGTACAGATGTCAGATCCGTGACCAAAGTAAAGTGTCTCCAGCATGCGGTTGGATGGAGAGCTTCGCCATACACTACCAACGCCCATGGAACTCGAAACCTCTCCACCAAGAGCGACGACGGTTCGGTGCCACCGCCAACGGACACCAAAAATGACACCTCCACCAGCAATGAAACCGCCAACAAGGAGGCAGCTGCCGAGAAGAAGGCAGGCATCCTGCCCAGTCTGGAGGATTTGCTCTTCTACACCATTGCCGGGGGCGCTGAAAAAATCCCGGCTCACAAATTCACCACAGCGCTGAAAGCCACAGGGCTTCGGACCGGAGACCCCCGGCTGAAGGAATGTATGGAGAACCTGAAAGTCATCATGAAGACCACGTCAGACGGAAACCTGGACCGACACCTCTTCAAGAAGTGTGTCCAGAGCAACATCGTGCTGCTCACCCAGGCCTTCAGGAAGAAGTTTGTTATCCCCGACTTTGTGTCCTTCGCCTCCGAAATCGACGCGCTCTATGAGAATGCCAAAAACCTGGGAGGGGGACAGGTGGCTGACTACATTCCCCAGCTGGCCAGGTTCAGCCCGGACCTCTGGGCCGTGTCCATATGCACTGTGGATGGACAAAGACACACAGCGGGTGACACCAAAGTCCCGTTCTGCCTGCAGTCGTGTGTAAAGCCGCTGAAGTATGCCATCGCCGTGCACGACCACGGGACAGAGTATGTGCACCGTTTCATTGGCAAAGAGCCCAGCGGCCTGCGCTTCAACAAACTATTCCTCAACGAGGAAGATAAACCACATAACCCTATGGTTAACGCCGGTGCTATTGTGTGCACGTCCCTCCTAAAGCAAGGGGCAAGCAATGCTGAGAAATTTGATTATGTCATGAACTTCATGAACAAGCTGGCAGGAAACGAGTATGTGGGTTTCAGCAATGCCACATTCCAGTCAGAGAGGGAGTCTGGAGATCGTAACTTTGCTATCGGCTACTACCTTAAGGAGAAGAAGTGCTTTCCAGAGGGGACAGACATGACCTCCATTTTAGACCTCTACTTCCAGCTGTGCTCCATCGAGGTGACCTGTGAAAGCGCTAGCGTCATGGCAGCCACCCTGGCCAATGGCGGCTTCTGTCCAATCACAGGCGAGCGCGTGCTGGGCCCAGAGGCGGTACGGAACACCCTGAGCCTCATGCACTCCTGCGGCATGTACGACTTCTCGGGACAGTTCGCTTTCCACGTTGGACTTCCAGCTAAGTCGGGCGTGGCAGGGGGCATCCTGCTGGTGGTGCCCAACGTCATGGGTATCATGTGCTGGTCCCCTCCACTGGACAAGCTGGGTAACAGTGTACGAGGAATCCAGTTCTGCACGGATCTGGTGTCCCTTTGCAACTTCCACAACTACGACAACCTGAAGCACTTTGTCAAGAAGCTGGATCCTCGCAGGGAGGGCGGAGACCAGAGGGTGAAGTCGGTCATCAATCTTCTGTTTGCTGCGTACACTGGAGATGTGTCTGCACTGAGGAGGTTTGCTCTGTCTTCCATGGACATGGAGCAGAGGGACTATGACTCCAGGACAGCCCTCCATGTGGCTGCAGCAGAAGGGCATGTGGAGGTGGTCAAGTTCCTGTTGGAGGCATGCAGGGTCAACCCTGTTCCCAAAGACAGGTGGGGTAACACACCGATGGAAGAGGCAGTGCACTTTGGACACCACGACGTTGTGACCATGCTCCAGGACTACAACAACAAGTACAGTCCACCAGGGGGTGCCACTGAGGACAAAGAGAAGGAGATATCAGAGAAGAACATTGATGGCCTACTATGAGCCAACTAATACTCTTATATATCCATTGAAATAAAATAACTAGAACGGACGTTCCCATTGAAATTATATATATGTGACCTGAGCAGCTTGGTCCTTTccagtcattctatttctatgtcccCATTAACTATCCGTGTGTGGTCCCTTTGTCATGTCAGTAGTAGGTCACGTGTATTGTTGATTTTGTATAAAAGTATTGTATTTCTAGTATTTTAAAAA

Function

GO: NA

KEGG:

id description
K01425 glsA, GLS; glutaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU668936 lncRNA downstream 2525 22723870 ~ 22724435 (-) True G586485
TU669000 lncRNA downstream 23085 22687699 ~ 22703875 (-) True G586541
TU669004 lncRNA downstream 34842 22691681 ~ 22692118 (-) True G586543
TU668995 lncRNA downstream 41136 22685565 ~ 22685824 (-) True G586539
TU668977 lncRNA downstream 102407 22622187 ~ 22624553 (-) True G586522
TU669031 lncRNA upstream 27327 22773407 ~ 22773606 (-) True G586570
TU669035 lncRNA upstream 33962 22780042 ~ 22780263 (-) True G586574
TU669038 lncRNA upstream 48602 22794682 ~ 22794926 (-) True G586577
TU668930 lncRNA upstream 52149 22798229 ~ 22798446 (-) True LOC110527527
TU669045 lncRNA upstream 61750 22807830 ~ 22808243 (-) False LOC110527529
NM_001124576.1 mRNA downstream 47008 22678448 ~ 22679952 (-) True mstn2a
XM_021608237.2 mRNA downstream 58858 22638090 ~ 22668102 (-) False stat1-2
NM_001124746.1 mRNA downstream 69569 22638472 ~ 22657391 (-) True stat1-2
XM_021608853.2 mRNA downstream 106712 22609884 ~ 22620248 (-) False LOC110527522
XM_021608861.2 mRNA upstream 1530 22747610 ~ 22768921 (-) True LOC110527525
XM_021608863.2 mRNA upstream 41477 22787557 ~ 22792363 (-) True LOC110527526
XM_036983012.1 mRNA upstream 51844 22797924 ~ 22807105 (-) False LOC110527527
XM_021608864.2 mRNA upstream 51844 22797924 ~ 22807491 (-) False LOC110527527
XM_021608865.2 mRNA upstream 51844 22797924 ~ 22807492 (-) False LOC110527527
TU668953 other downstream 106844 22610161 ~ 22620116 (-) True LOC110527522
TU668853 other downstream 256442 22463208 ~ 22470518 (-) False G586414
TU668281 other downstream 632621 22092812 ~ 22094339 (-) True LOC110527506
TU667595 other downstream 1208087 21517395 ~ 21518873 (-) True LOC110527499
TU667558 other downstream 1302375 21421454 ~ 21424585 (-) True G585240
TU669046 other upstream 62573 22808653 ~ 22812503 (-) True LOC110527529
TU669376 other upstream 338410 23084490 ~ 23087137 (-) True G586878
TU669359 other upstream 415814 23161894 ~ 23165209 (-) True LOC110527533
TU669777 other upstream 628932 23375012 ~ 23377701 (-) True G587242
TU671692 other upstream 2082408 24828488 ~ 24828700 (-) True G588987

Expression Profile