RNA id: XM_021608865.2


Basic Information

Item Value
RNA id XM_021608865.2
length 3728
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110527527
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 22797924 ~ 22807497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACACTATTTGGGAGGTTGGGTTCGCTTTAACAGATAGCAGAGGCGTCACACGAGGCCCATCGTCTGGGCGAATCGAGTTCGGAGTTCCAGTCTAAGCGAAATGGCCTGAACTAGGATGTGTTTATTAAGGATATTACTTATGGTATATCATCGGTATCATGGATGCATAGGATGACGACGGAATAAGCTGCATTGTAGGCAATGCAGAAAGCTTTCGATTTCAGACGGGGAGACACAACTGCCACCGCCGAACCTGCGTAGTCAAGGTTGAAAGAATAGGAACGCGGACCGGGGACTTTTGCAGAGATGGCTGCAGACGACAAAGTGGTAATCCTATCGGACGACGAAGAGGACCAGAAGAGGAAGTACGTCCTGGACGAACCCTTCAACACTCTTTCCCTGGAGCTGCAGACCGACCGAGAGCCAGTGTCTGCTGCAGCATCAGACACACAGTCTGCTCCAGAGACACCCATGGCCTCGCCACTGAAAGACCTAGGCTGCTTTGAGAGGATGTGCCTTCGAGTCAACTCCCAGCTCCTCATCTCCAAgatcttctacttcttcttctatgCAGCATACGGATCCCTGCACCCACTCCTAGCTGTCTACTACAAGCAGCTCGGGATGTCGCCAAGCCGTAGTGGACTGTTGGTTGGGATCCGGTACTTTATAGAGTTCTGCAGTGCGCCATTCTGGGGAGTGGTGGCCGATCGTTTTAAGAAAGGGAAGCCATTGTTGCTGTTCTCTGTGCTGTGTTGGTTGGTGTTCAACTGTGGCATCGGCTTTGTCAAACCAGCTGCCATGGTCTGTAAGGAGAAGGTGGACATCACCACTGTGGCTCCACCAATACTCCCCTTGACGACAATGATACCAATTAACGGCTCGCTACCGGACGTTTCCACCAATCACACGAGGAGAAGTCGTCGGGATTTGTTTCGAAGTTACTTTCCTAGCTTCCTTTTTGTTTTGAACGGCCGTGATTCTGGCTATAGTGTACGCCGCAGGCATAGAAGAGGTGCTGATAGCAATACCACCCAATCCACAGGGGTGTCTTACGAGCAGAACAATGCCACGGCAACAACCACTTACACCCCCACCCATGCCCAACCCAGAGTGGTGCCTAATGAGCAAGCCAATACCACTCAGCTTTTACTGAATACCACAACTATGCCACTAACCATTAAAAACCCCACCCTTGCCCCtaaccatgcccccaccacacatTCCATATTGGTGCCTCACGAGCAGGGCAATACCACTCAAGCTACACCAAATACTACTTCAACAACTATGGCAACCACTACCCCTTCCCCCACCCAACCCAGAGAGTACATCATTGAGTACAACGAGGATCAGGTAGAGAGCATCTTTCTCCTAATCCTCTTGGTCATCATCGTGGGGGAGTTCTTCAGCACACCGGCAGTCACCATTGTGGACACGGTGACGTTACAGTACCTGGGGAAGCACCGGGACCGCTACGGCCTGCAGAGAATGTGGGGGTCCCTTGGCTGGGGCGTGACCATGCTGCTAGTGGGTATCTGGATAGACCACACCCACCTTACGCTGCTCATCGACGGCGTGGTCGGCTGTATCCTGCCCGAGTATAAGAACTACCAGGTGGCCTTCATAGTGTTTGGAGTGATGATGGGCCTGGCCCTGGTGGTAGCAACACAATTCTACTTCGACAGtggGGACTACAGACAGGAGTTGCCTCAGAGGCCccaggaggtagagataccacaGGTAGGCGGGAACGTGGCATCTCCAGAGGGGACCGAGAGCTCCACCTCGGACCAGACCCCCATCACCCCAGAGTCCACCATCCCCGAACAGCCTTTCCACTACAGTGACCTCCTCAGGCTGTTCTGTAgtgttcagtacagcacagtgctGTTCGTCGCCTGGTTCATGGGCTTCGGTTACGGCTTTGTGTTCACCTTCCTGTATTGGCATCTTGAGGACCTGAAGGGGACCACCACGCTGTTTGGTGTGTGTTCGGTTCTGAGTCATGTGTCAGAGCTGGCTGCTTACTTCACCAGTCATAAGTTTATTGAGCTGGTGGGACACATCAGGGTCTTGTACATTGGCTTGGCATGTAACACAGCACGCTACCTGTACATTTCTTACTTGGAGAATGCATGGATAGTTCTGCCTATGGAGGTCTTGCAAGGTGTGACCCATGCGTCCGTTTGGGCAGCCTGTATCTCCTACCTGAGTGCCGCGGTGCCCCCAGCTCTGAGGACCTCTGCCCAGGGTATCCTCCAGGGTCTACACCTGGGGCTGGGACGGGGCTGCGGGGCCATGGTGGGGGGAGTCTTCGTCAACTATTTTGGAGCTGCAGAGACGTTCAGAGGGATTGGAATGGCTTCCCTGGTGATACTCCTCATCTTCTCCTTCATTCAGTGTCTGACCGGACAGAACGAGGAAaaggAGGACAGGATGCTAGCAGAGAACATTCCGGTTCCTTCCAGTCCAGTTCCCATCGCTACCATAGACTTGATGCAGAACCAGAGCCAGgtgGGTGTGATGGTGCCCCACCCTGACCCTAGACCCCCGGCTAAGAAGACCAAGCaccaggaggagcaggaggatgtTAACAGACCGGCCTGGGTGCTGAGTGGATCCCCCTGGGTCACCATAGCCTTCActgtctgccagatcagagagaTGTACTGCATGGCCAAGAGTAGTCTACCCTCAGAGACACAGCCACTGCAGAAAGGAGCAAAATGATCAGAACTCTTCTGAATACAAGGCAGTGGAGACTGAACACAGAGCAACAGAAGTCACCACACCACCATAACGGTTCCCCCAGGCAGCATACCTAGCAAGGCCCACCCCGCAGAGCACCCCGAATCCCAGCCCTCTCCCATACCAGACTAGGGGAACTCTGTGGAGCAGCCTGCCTTTTTCACCTGGTACTTTCACATCAACTGTCTTTCCGGCAGTAGATTAAAGGCTTGAGTTGAGTTTCGAGACAGTACTTACATTCACTCGCGTGTCTCCTTTGGTTCCTGCGACATGTACAGTAAGGAAGGGGTAAGGAGCAGTGAGCACTACTCCACATCGATGACTGTGTGCTGTAAAAGGTACTGAGTGATaagctttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatctggcATTGTGTAAATAGAATTTGATCTAGAAAGGGTCGAAAGGGATTGTTGCCGTCTAGAATGTAATGTATTTATTTCCTCTGTGTCTTCCTGCACGTGCTTCTGACAATCATGTTATTATTTTGACTCTTGGGATGAAATGATATGTGTATAgacaataaaaatgtatttgtagatAAATCATTAACTTTCACTGCTTTTCTGGTGTCTCAATGATATTATGGCTGTCTATTCCGGCATGTTTTTAAAATCCTAAGAGGAGACACTTGGTGGCAGTAGTGTACCGTATTGAAGTACTAaccctaagtgtgtgtgtgtgtgtgttcaggtcaGGGTGTGCGTGCTGTTGCTGATGATGGGAGTGTGTGGGAGGACAGTAATAGTGTTCTCTTCAGAAACTACACCACAATGCCATCTGCAACATCCCTTGTCTCGGCAGAAAATATAAGCTAATATTGATGTTGaagatggaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU669038 lncRNA downstream 2998 22794682 ~ 22794926 (-) True G586577
TU669035 lncRNA downstream 17661 22780042 ~ 22780263 (-) True G586574
TU669031 lncRNA downstream 24318 22773407 ~ 22773606 (-) True G586570
TU668936 lncRNA downstream 73489 22723870 ~ 22724435 (-) True G586485
TU669004 lncRNA downstream 105806 22691681 ~ 22692118 (-) True G586543
TU669045 lncRNA upstream 338 22807830 ~ 22808243 (-) False LOC110527529
TU669051 lncRNA upstream 12051 22819543 ~ 22819782 (-) True G586590
TU669335 lncRNA upstream 145850 22953342 ~ 22958668 (-) True G586844
TU669329 lncRNA upstream 152170 22959662 ~ 22987542 (-) False G586843
TU669331 lncRNA upstream 152170 22959662 ~ 22968575 (-) False G586843
XM_021608863.2 mRNA downstream 5561 22787557 ~ 22792363 (-) True LOC110527526
XM_021608861.2 mRNA downstream 29003 22747610 ~ 22768921 (-) True LOC110527525
XM_021608858.2 mRNA downstream 51844 22726960 ~ 22746080 (-) True glsa
XM_021608860.2 mRNA downstream 60955 22726960 ~ 22736969 (-) False glsa
XM_021608859.2 mRNA downstream 62223 22726960 ~ 22735701 (-) False glsa
XM_021608869.2 mRNA upstream 184 22807676 ~ 22812906 (-) False LOC110527529
XM_021608871.2 mRNA upstream 24807 22832299 ~ 22908138 (-) False ahr1b
XM_036983015.1 mRNA upstream 24938 22832430 ~ 22860096 (-) False ahr1b
XM_021608872.2 mRNA upstream 24938 22832430 ~ 22908138 (-) True ahr1b
XM_021608873.2 mRNA upstream 108290 22915782 ~ 23035974 (-) True ahr2
TU668953 other downstream 177808 22610161 ~ 22620116 (-) True LOC110527522
TU668853 other downstream 327406 22463208 ~ 22470518 (-) False G586414
TU668281 other downstream 703585 22092812 ~ 22094339 (-) True LOC110527506
TU667595 other downstream 1279051 21517395 ~ 21518873 (-) True LOC110527499
TU667558 other downstream 1373339 21421454 ~ 21424585 (-) True G585240
TU669046 other upstream 1161 22808653 ~ 22812503 (-) True LOC110527529
TU669376 other upstream 276998 23084490 ~ 23087137 (-) True G586878
TU669359 other upstream 354402 23161894 ~ 23165209 (-) True LOC110527533
TU669777 other upstream 567520 23375012 ~ 23377701 (-) True G587242
TU671692 other upstream 2020996 24828488 ~ 24828700 (-) True G588987

Expression Profile