RNA id: XM_036983020.1


Basic Information

Item Value
RNA id XM_036983020.1
length 1444
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC118965271
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 23065989 ~ 23098610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTCTACCAGGGGAATTAGCAGATCAGCTCACAGAGCAACAAATGTGGCCCACACCCattcaagggagagagagaaaaaaaacacattgcgCATGGGTCTCCAACTTAACACTCCTGTCAACTTAACAGCATAACAGTTGCACAAATTCATCACGGAAAGGGAGTTGAAGGAAAACGTATTGCTTGACTTGGACTTGTATTGACTGTTCATCATGGAGGCACCAACAACAGCAGGTACAATAAGCCCCTCGTCATCGGGAGAGGCCTTCAGCCACATGGTCAGTCACATTTTCGGAGAACTCTTCACACAGGCCCCCGTAGCTGAAGTTCTGACAACAACTTCTGCACATATGACTGAAACAATCTCAGACGCTTCTGTGGTGGGAGCCGCCGCCGTAAAAGGTGTATCCTTTGAAGTCCTTTTCGCAGGAGgaGTCATTGTGGTGGTACTGGTGGTGGTACTGGTGCTGGTACTGTGCCACAAGGGCAAGCATAAGGGCACTTACCACACCAACGAGGCCGAGTGTGGTGATTCTGTCGACACGTATGGCGTTGCCTCTTAAAGCGAACTAGAGATTTTGATTGAGGAAGAATAGAAAGAAGTACACTTCATTTGAAACAGGACTTTTTCCGATTCTAAACCGGGGCCAGTTGCCAAATATTTTCTACGGAATTGGTAATGCCTATGATGGTCATCTAATTTCAAGGCAACATTTATATGGGGCATACGACCAtctcagctctgcagattttgccaCGAAGAGACAGAATCGTTAGATCACTTATTTTTGTATTGcccatatatacactatatatacaaaattatgtggacacccattagtggatttggctatttcagccacattacagccttatttccctcatcaatcaatATACAGAAGCACTTTAATAAACAATTAATATTCATTACATGTGACTAACTTCAAGCTTACAATTAGTACAGTAGTTAAACCAATATTAGATTGTTGAGGTTTTCGAAAAGATGTAAAAACTCGAGAAATTTTACAATCCTTTTtgttttcctttaaaaaaaaaatgtatactcaAAAGATAGTACCTTGTTTGAATTTCTATTATGAGGGTGTTGAGTGAGCTTAATGTATAATAATGTATAGCATTGCTGAATGTAATATCTGTTTTCAATTTTTTTCTAAATTGACGTCCAGTAGTAATCTGAGCTTGTAAAATTAAATCAAGGCACAGGCATCTTTcctaacgcctgaaggtaccaataACTGAGAAAAGGAAATGCTTCGGCGAGGACCATAGGAACACAAAAAATTACTTTCATGAAACTTGACAGACATTTCACCCATGACAATACTGGGAACAAAACAGTCAAAAAAAATGTCAATTCTCCTTCTTCTCATGCAAGTCTCTGTAACTAATATATTACCATGTGATTAAAGAGAAGCAACCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU669369 lncRNA downstream 3318 23062179 ~ 23062671 (-) True G586872
TU669338 lncRNA downstream 71303 22992422 ~ 22994686 (-) True G586845
TU669330 lncRNA downstream 78447 22976588 ~ 22987542 (-) False G586843
TU669333 lncRNA downstream 78447 22979814 ~ 22987542 (-) True G586843
TU669327 lncRNA downstream 88180 22976588 ~ 22977809 (-) False G586843
TU669390 lncRNA upstream 5568 23104177 ~ 23104473 (-) True G586890
TU669408 lncRNA upstream 46372 23144981 ~ 23145245 (-) True G586908
TU669523 lncRNA upstream 143721 23242330 ~ 23242569 (-) True G587004
TU669699 lncRNA upstream 151348 23249957 ~ 23250214 (-) True G587174
TU669715 lncRNA upstream 167983 23266592 ~ 23266797 (-) True G587186
XR_005052554.1 mRNA downstream 12896 23048031 ~ 23053093 (-) True LOC118965270
XM_021608873.2 mRNA downstream 30015 22915782 ~ 23035974 (-) True ahr2
XM_021608871.2 mRNA downstream 157851 22832299 ~ 22908138 (-) False ahr1b
XM_021608875.2 mRNA upstream 8033 23106642 ~ 23133644 (-) True LOC110527532
XM_021608876.2 mRNA upstream 63981 23162590 ~ 23164706 (-) False LOC110527533
XM_021608884.2 mRNA upstream 218980 23317589 ~ 23320557 (-) True LOC110527539
XR_005052555.1 mRNA upstream 228437 23327046 ~ 23329616 (-) True LOC118965272
XM_036984417.1 mRNA upstream 294513 23393122 ~ 23552928 (-) False LOC110528816
TU669046 other downstream 253486 22808653 ~ 22812503 (-) True LOC110527529
TU668953 other downstream 445873 22610161 ~ 22620116 (-) True LOC110527522
TU668853 other downstream 595471 22463208 ~ 22470518 (-) False G586414
TU668281 other downstream 971650 22092812 ~ 22094339 (-) True LOC110527506
TU667595 other downstream 1547116 21517395 ~ 21518873 (-) True LOC110527499
TU669359 other upstream 63285 23161894 ~ 23165209 (-) True LOC110527533
TU669777 other upstream 276403 23375012 ~ 23377701 (-) True G587242
TU671692 other upstream 1729879 24828488 ~ 24828700 (-) True G588987
TU671806 other upstream 1873004 24971613 ~ 24979107 (-) True G589093
TU672308 other upstream 2102797 25201406 ~ 25278874 (-) True G589529

Expression Profile