RNA id: XM_021608876.2


Basic Information

Item Value
RNA id XM_021608876.2
length 1257
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110527533
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 23161894 ~ 23165209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGCAGGGTGGTTGACCAGAGGCACTAGGCCCTCCCCACACCAACTATAAAAGCCTATAGTCTTTGTTCCTCCACAGCCACTACTCACTCTCATCTGCAGATAACCTTTGTCTCAGTCCGAGACACACTGATCACATTACAAACCACAATGACTGACCTGGAGAGTTCACTTGCCACCATCATGGAGGTGTTCCACAGGTACACAGAGAAAGAAGGAGACAAGCACAAACTGAAGAAAAGTGAACTGAAAGACTTGATCAATGAGGAGCTGCCAGCCCTTACAGGGCAAGTGAAGGACCAGGCCACTATGGACAGTTTGATGGAGAGCCTGGACACGGACGGAGACTCGGAATTGGACTTCCAAGAGTTCATGACATTTATCACCATGGTAACTGTCTGTTGCCATGATTTCTGCGAGCACCATGAAGACGAGTAGCTAGGCACCAGttaaacaagagagagagagagagaaagccagtaAATTATAAAGTAGGAACTTTAGTTTGATAAAATACTGAAATGTCAATGCAAActttgtatttttccatttgGTCCCATTTAGATTCAATAGGTTTCTTATACCCTGTTTGCCTACAAATGGTTAACGCACTTTGTTTCATTGCCTGTGATTTGTCAGAGTTGACAAAGCCAAATTGGTTTAGTCCTGAAACGTCATAGAATAGTTTTTGCCAACAAAGCTTAGAGCACTTTTCTTGTATACTGTAAAGCTAAGAGCCAATGTAATATATTCATGCATTTCTGCGGCTCTAAAATGGTTCAATTGTTATCACTAACAATGCATGTGTAATCAGCTACCCCATTCATTGGACATGGTCTGGCAAGTAAAACAAGTATTCTCCagtttgattttgacccccccccccaaaaaaaaaatgttgaattcCAGGCAATACCTTGAATTGAATTCTGTTTTTACGAAAATTGTTTTCAAATTGAACTGTGCTTTGCGAGATGCTATTAAACATATAACATAGATAATCAATAAAGATGATCAAATGAATACAAGGACATACTTTTCACCAGTTACACCATGTTCATTTTACTTGAGATTCATACCATTCACATTTCTGTCTCCTGTAGAAAAGTTGTGATGTGTACCCCTGAGTGGCAGTGTTGCTCCGTGACAAAAGCATTGGCATCTACTGGATGTACGTAAAAGATATTGAATcggtgaaacagagaatgtatCAATCTCCCTGATGCATCCTCAGTAAACATCTCTATACTATCGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU669408 lncRNA downstream 17345 23144981 ~ 23145245 (-) True G586908
TU669390 lncRNA downstream 58117 23104177 ~ 23104473 (-) True G586890
TU669374 lncRNA downstream 79426 23073349 ~ 23083164 (-) False G586877
TU669375 lncRNA downstream 79426 23073526 ~ 23083164 (-) True G586877
TU669373 lncRNA downstream 80210 23072543 ~ 23082380 (-) True G586876
TU669523 lncRNA upstream 77624 23242330 ~ 23242569 (-) True G587004
TU669699 lncRNA upstream 85251 23249957 ~ 23250214 (-) True G587174
TU669715 lncRNA upstream 101886 23266592 ~ 23266797 (-) True G587186
TU669786 lncRNA upstream 228201 23392907 ~ 23402022 (-) True LOC110528816
TU669905 lncRNA upstream 384072 23548778 ~ 23549113 (-) True G587342
XM_021608875.2 mRNA downstream 28946 23106642 ~ 23133644 (-) True LOC110527532
XM_036983017.1 mRNA downstream 63980 23065989 ~ 23098610 (-) True LOC118965271
XM_036983016.1 mRNA downstream 63981 23065989 ~ 23098609 (-) False LOC118965271
XM_021608884.2 mRNA upstream 152883 23317589 ~ 23320557 (-) True LOC110527539
XR_005052555.1 mRNA upstream 162340 23327046 ~ 23329616 (-) True LOC118965272
XM_036984417.1 mRNA upstream 228416 23393122 ~ 23552928 (-) False LOC110528816
XM_036983021.1 mRNA upstream 693802 23858508 ~ 23934010 (-) False LOC110527541
XM_036983022.1 mRNA upstream 693802 23858508 ~ 23934010 (-) False LOC110527541
TU669376 other downstream 75453 23084490 ~ 23087137 (-) True G586878
TU669046 other downstream 350087 22808653 ~ 22812503 (-) True LOC110527529
TU668953 other downstream 542474 22610161 ~ 22620116 (-) True LOC110527522
TU668853 other downstream 692072 22463208 ~ 22470518 (-) False G586414
TU668281 other downstream 1068251 22092812 ~ 22094339 (-) True LOC110527506
TU669777 other upstream 210306 23375012 ~ 23377701 (-) True G587242
TU671692 other upstream 1663782 24828488 ~ 24828700 (-) True G588987
TU671806 other upstream 1806907 24971613 ~ 24979107 (-) True G589093
TU672308 other upstream 2036700 25201406 ~ 25278874 (-) True G589529
TU672303 other upstream 2083974 25248680 ~ 25290605 (-) True LOC110527565

Expression Profile