RNA id: TCONS_00034073


Basic Information

Item Value
RNA id TCONS_00034073
length 808
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_017063
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1121458 ~ 1125395 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAAGACGGCTATGCTTAAACTCTGAAGCACTTTATAAATAGATATTCATGAGTATCAGCGAAGACACAGATCAAAACATTTGATTGTGAACGTTATCTCCATGTGGACCTAATCGATCGAGAATTTCAAAGATCAATATCGCCATCTATTTGAGTGCGTCTGGACGCGTTCGCGATACAAACACCAGACATCTATACAGCTTGCTTGATATCATGTTGGGCGATGCTTTTGGTCGTCGTGTCGAATCAAGCGTGGACAATAAAGCAGTGAAGATTAACAGATCAAAGCAAGTGCTCTTGAAGAAAAGAGGACGAAACGTTCACAGCAAAGCCAACAACACATCAGCAAACATCCACAGAGGCAGCGCTAATGAAGAGCTCAAACCTGCTCAGTCCAAACCAGCACCCAATAAACAGCAGCCGAAGTCCTGCACTGCAGAACGAGGAAGCCAGATCAGCAGAGCGTCTATCCTGAACTGCAGCCGCCTGGAGCAAACCACAGACAACCTAAACAGACGGACACATCAGAGCAAGCACCAAATAAACGCAAGACAGGACAAGCCCACCTCCACAGAGAAGAGCCCAGAAAACATCCTGAAGCAGGGGAACGCCTCCACATCCTCGGATGCAGAGAAGACGTACGCCGGTGCAAAATTCAGCGAGCCGCCATCCCCCAGCGTCCTGCCCAAACCGCCCAGACACTGGGTAGGAGACCACGCTcctcagcacacacacaaacactgcagcagAGAGCAGATGTCTGAACACCTCAAAACACTGCTGAAGGTCCAAACTGACTCACTTTGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-189 Predicted to be active in nucleus. Orthologous to human PNRC1 (proline rich nuclear receptor coactivator 1).

Ensembl:

ensembl_id ENSDART00000064472

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036534 lncRNA upstream 221078 896905 ~ 900380 (+) True XLOC_017061
TCONS_00034068 lncRNA upstream 364389 753868 ~ 757069 (+) True XLOC_017058
TCONS_00036532 lncRNA upstream 439166 681847 ~ 682292 (+) False XLOC_017056
TCONS_00036535 lncRNA downstream 74897 1200292 ~ 1203603 (+) False XLOC_017065
TCONS_00036536 lncRNA downstream 74897 1200292 ~ 1203802 (+) False XLOC_017065
TCONS_00036537 lncRNA downstream 74897 1200292 ~ 1203874 (+) False XLOC_017065
TCONS_00034075 lncRNA downstream 74971 1200366 ~ 1202182 (+) True XLOC_017065
TCONS_00036538 lncRNA downstream 229268 1354663 ~ 1355683 (+) True XLOC_017070
TCONS_00034072 mRNA upstream 31855 1088658 ~ 1089603 (+) True XLOC_017062
TCONS_00034071 mRNA upstream 273390 826459 ~ 848068 (+) True XLOC_017060
TCONS_00034069 mRNA upstream 298182 812012 ~ 823276 (+) False XLOC_017059
TCONS_00034070 mRNA upstream 298232 812162 ~ 823226 (+) True XLOC_017059
TCONS_00034066 mRNA upstream 345377 733515 ~ 776081 (+) False XLOC_017058
TCONS_00034074 mRNA downstream 70991 1196386 ~ 1199009 (+) True XLOC_017064
TCONS_00034076 mRNA downstream 147131 1272526 ~ 1276175 (+) False XLOC_017066
TCONS_00034077 mRNA downstream 147140 1272535 ~ 1276158 (+) True XLOC_017066
TCONS_00034078 mRNA downstream 152789 1278184 ~ 1287799 (+) True XLOC_017067
TCONS_00034079 mRNA downstream 191100 1316495 ~ 1327859 (+) False XLOC_017068
TCONS_00034041 other upstream 803353 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034086 other downstream 260354 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034116 other downstream 1783156 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034146 other downstream 3949529 5074924 ~ 5075054 (+) True XLOC_017116
TCONS_00034147 other downstream 3981173 5106568 ~ 5112043 (+) False XLOC_017117
TCONS_00034151 other downstream 4298567 5423962 ~ 5424096 (+) True XLOC_017119

Expression Profile

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