RNA id: XM_021608883.1


Basic Information

Item Value
RNA id XM_021608883.1
length 1726
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110527538
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 23306816 ~ 23317470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCTCTGGCGCCAAGCTTGACTACCGCCGGTATGCAGAGACACTCTTTGACATCCTGGTGGCTGGCGGAATGCTTGGTTTTTAACAAGCTGATCCGGCGTTACAAGTACCTGGAGAAAGGGTTTGAGGAGGAGATCAAGAAGTTGCTGCTGTTTTTAAAAGGGTTCACCGAATCCGAACGCAACAAGCTGGCCATGCTCACTGGCATTCTGTTGGCCAATGGAAACATATCAGCCGCTGTCATTGGAAGTCTCTTCAACGAGAACGTGGTCAAAGAGGGAGTATCTGCAGCCTTTGCTGTGAAACTGTTCAAGTCCTGGATCTATGAAAGGGATATCAACGCTGTTGCTGTCGCTCTCCGCAAAGTCGGCATGGACAACAGGCTGATGGAACTCTTTCCCGCCAACAAGCGGAGCTGTGAGCATTTTTCTAAGTACTTCACTGACGCGGGACTGAAGGAGCTGTCGGACTTTGCCAGGAACCAGGAGGCCATCGGGTCCCGTAAGGAGCTGCAGAAAGAGCTCCAGGAGATGATGGCCCGCGGGGACAACTTCAAAGATATAATTGCCTATGTCAGGGAGGAGATGAAGAAGACTAGCATCTCTGAACAACTGATGATCGGCATCGTGTGGTCCAGTGTCATGAGCTGTGTGGAATGGAACAAGAAGGAAGAGCTGGTCTGCGAACAATCTATCAAACACTTGAAGCAATACAGTCCTCTCCTGAAGGCATTTACTTCCCAGGGAGCCTCTGAGATCATTCTGCTGGTGAAGATCCAGGAGTACTGCTATGACAACATCCACTTCATGAAGGCCTTCCAGAAGATTGTGGTGCTCCTCTACAAAGCGGATGTTTTGAGTGAAGAGGCCATTCTTAAGTGGTACACAGAGGCCCACGTTGCTAAAGGAAAGAGTGTTTTCCTCGAGCAGATGAAGAAATTTGTTGAGTGGCTGAAGCATGCAGAGGAAgAGTCTGAGtccgaggaggaggaagagaactGAGAACTCAACCCTCCGGGTGTGCATTTTAAACGGCACAGTAGGAGCAGTAGGATGTTACTGAAGTGCTCGTCTCTCCCAGTCCTGTTTTTCTATTTTACCCCTCTCCAACTTCAACATTTACATTTAATTCAAGAGCTGTGATGTCAACAGTACACTCCTTATTAGATTTTATTTGAAACTTACCCTTAGTAGTTCACATATATTGTGAATTAAAACCTCAATCATAAAATGAACAAATTATGTGTTGATTTGTTTGGAAAGATGCAGAAATGAACCCCCTTTTTTATTAGAATTTCATTCTACTTGATGATTAAGATACTCTATTGATGTTGCTGCATCCAGTCTAAAGTCTGATAAACCATGATATCCCCGATACTGCTGTACCTGTTAATATTGCAGTAGTGCGCCTTCTTGCCGCGTGACTTAAAGGCACCCTAAAATGACAAGTCATTTGCCTTCTCGCCAAAGGATTTACCGGTAGCCCTATCCTCATGTTAGCTCCTTTCCTTACCTTGGCCTTTTGGACAAACCTGTAATGAACAGTTGAATTGGTGATCAAATGAACGTTGTGCAGTGACTGTCATCTTGGTATAACCACCTTTTGACCTGACTGACATCCTCTCTGGAAGATGAATTGCCAGCTAAGTAATTAATATTGGTTACTACTTTCTTTAATCTGATTAAACCAATTGACTTTTTTAAAGAAATAAAAAGGACTAATTCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU669526 lncRNA upstream 62952 23244719 ~ 23244974 (+) True G587007
TU669520 lncRNA upstream 65949 23241757 ~ 23241977 (+) True G587001
TU669517 lncRNA upstream 68348 23239256 ~ 23239578 (+) True G586998
TU669417 lncRNA upstream 140310 23167358 ~ 23167616 (+) True G586917
TU669238 lncRNA upstream 143194 23162501 ~ 23164732 (+) True G586760
TU669583 lncRNA downstream 49374 23366844 ~ 23425348 (+) True G587061
TU669914 lncRNA downstream 242150 23559620 ~ 23559956 (+) True G587351
TU669992 lncRNA downstream 288281 23605751 ~ 23606028 (+) True G587423
TU670019 lncRNA downstream 293882 23611352 ~ 23614258 (+) False LOC110527540
TU670054 lncRNA downstream 322729 23640199 ~ 23640452 (+) True G587460
XM_021608881.2 mRNA upstream 18112 23271803 ~ 23289814 (+) True aox6
XM_021608880.2 mRNA upstream 77192 23227353 ~ 23230734 (+) True LOC110527536
XM_021608879.2 mRNA upstream 86923 23193574 ~ 23221003 (+) False LOC110527535
XM_021608878.2 mRNA upstream 86923 23193587 ~ 23221003 (+) True LOC110527535
XM_036983009.1 mRNA upstream 585387 22684527 ~ 22722539 (+) False LOC110527523
LOC110527540 mRNA downstream 292050 23609520 ~ 23621051 (+) False LOC110527540
XM_036983026.1 mRNA downstream 992368 24309838 ~ 24352001 (+) False LOC110527542
XM_036983027.1 mRNA downstream 992368 24309838 ~ 24352001 (+) False LOC110527542
XM_036983028.1 mRNA downstream 996540 24314010 ~ 24352001 (+) True LOC110527542
XM_036983030.1 mRNA downstream 1041198 24358668 ~ 24373759 (+) False LOC110527543
TU669156 other upstream 292806 23010061 ~ 23015120 (+) True G586685
TU668622 other upstream 604105 22701194 ~ 22703821 (+) True LOC110527523
TU668616 other upstream 620080 22686489 ~ 22687846 (+) False LOC110527523
TU668464 other upstream 947699 22356583 ~ 22360227 (+) True c7h10orf53
TU667948 other upstream 1354657 21953029 ~ 21953269 (+) True G585573
TU670005 other downstream 293882 23611352 ~ 23621369 (+) False LOC110527540
TU670007 other downstream 293882 23611352 ~ 23621369 (+) False LOC110527540
TU670023 other downstream 293882 23611352 ~ 23621234 (+) True LOC110527540
TU670255 other downstream 490252 23807722 ~ 23808000 (+) True G587660
TU671438 other downstream 1586861 24904331 ~ 24905581 (+) True G588755

Expression Profile