RNA id: XM_021608884.2


Basic Information

Item Value
RNA id XM_021608884.2
length 2739
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110527539
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 23317589 ~ 23320557 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCATGGTGACTGGGCTCAGAACGGATCCGTTATTCAAGAAATGGCATGCTGCTCTGCCAAGGGAATGGCGTGAGCCCAGTTAGCGCAGGATCCCCCACCCCCAGTCACCGGATCACACGGCGGCAGCTGGTCCCAGGTGCTGTTTTCACTCTGCTTTTATAAAGTGGTTGGCAGCAGTCGGCTGCACCATGAAACAGACACAGTTGCAGCTCAGTCCCCCCGCCTTAGACACCCAGCCAGGTCCACCATGAAGTCCACAGGGAGCGAACAGAGTGCCACGCCGGACGGTTTCCCCTCCGACCTGGACGAGCTGGATAGTGGAAGCGAGGAGAGCTCCGACAACAAGTCGACGGGCGGCGGCTGTAGCCCCCAGGGAGGGTGCCGGGAGGTagccaggcagagggagagggggtgcggCAGGCGTCTGCCGGGCGTTAGCAAACAGAGACAGGCAGCCAACGCGCGGGAACGGGACAGAACCCACAGCGTGAACACGGCCTTCACCGCGCTGCGCACCCTCATCCCCACAGAACCGGCCGACAGGAAACTGTCCAAGATCGAGACGCTGCGCCTGGCGTCCAGCTACATCTCCCACCTTGCCAACGTGCTGCTGCTGGGGGACGAGTGTTTGGACGGACAGCCCTGTCTCAGGTACCACAGCATCCTGCAGAGCAGCACCAACATCAACAGCAGCAGCCCCCCGCTCAGGCCCATATGCACTTTCTGTCTCAGTAACCAGAGGAAAACGCtcagagatggagaaaagcacaCAGCCATCTGACATGGTCACGCACTACTGTCAAGACCAGGATGCATACCAAGTCACACGGATGTTTACATGTACCTAcgagtgagaaaaaaaaacaatataacTTTGTACATATTTTTGCTAAATCTtaggacaaccccccccccccccactgaaaTGCACTTTCCGTTCTCACATGTGCGTCTTATCCACTGTGTTTTGGTCAAATTGTAACTCGAGCACAATGTGTAAGGTTCCACCTGACAGTGGGCTATTTCGGTATCAGAAATAGTAAGCCCTAGTGTCTCGCTCCTAAAATCACAGTCTCGCCTCCCCCATGCAGCCAGTCACATGGTTGTAACCCAAGCCTAGGCCGTGCAGCGGTTGCTGtcagtagagtagtggactggtAGGCTTGTCTCCTGACTGACTCATCTTTTGCCAACTGAGTATAGGGTGCCTTGCTCCAGATTTTTATAAATTCAAACTCAATTCAATAGCCCCAAATATACTTTGGTAGCTGTAAAATTGTATTTCATTTTAACCAGGATAGTCCACTTAGTAAATGAGTATAAGCCACTGCTTTCATGGGAGTCTTGAAATCTAAATGGGGGAGGCAAAACAAATATAAAATGTGCTTGAATCCAAATATTAAAGTGTTATATATAGCCCCCCCACTAGTACAGCAGAAGCAACCCCACTTGGTGTTTACAAACTTTACCACAACATCAAATCATATTCCATGTCAAATGTAACATGGTGTGGAACAGAAGAAAATATAACATACATATATGTAATCACTGCTTTTGGGAGCTCAATGTTACACCGTATGTTGAGAAATGTTTACTTGCATGTATTGCACAAGCCTTTTCACAATTCACAAACACACAATAGttctgcatgtgtgtctgtgcagtATTGGTTGCACCTTTGaaggcccaatgcagctgtttttatatcAGCATCAAATCATTTCTACTTAAcaaagtaccttactgtaatagatttccattaaaTTGGGAAAAACGTTGCTTTTTAGCACAAAACTTTCTCAAGctagaattttgctaggactgtctgagagTGGTCTGAGTTGGAAGTTTGGAACCCTTATTACAGGTCATGGTGTATTaactgcatggtgatgtcacaatgGAAAGTCAAAACTCCcacccatgcaaacctgctgatcagaaggtcctgtgtagattgtattttcaaccagcaactaccAGGAAATAACACAGATCAAATGTGTTCATACTtttagtgttagtttcatcagcacAATATAATTTAAAAGACCGGAACAGAATTGACTGCACTGGACCTGCAAAACCTTTAAGCTTAACACAATATTTTGATTTTATGCATTGATTTGGGTATATATTAAATTACTTCAAAATCATGCAagataaaaataatatttttatgaattatccAAAACAAATAACTTGTTGCACACGGATTGCAATACACTTTTACCTCAATGAAGATCTGAATGTATTAACCTAATAGAATTATAGGCCTACCTCCAAGTCTATTGTAATGTGTAGCATTGTTGTAAACATACTTGAATTTCTCATAACTTATGGAAGACAATTGTCCTCTGCACATAAACAATGAGAAGCtgtttaagaaaaaaaaataatgtatttttgtaCAATtagctaaaaatatatattatttgacTTGTAAACACAATCATTAAACTACTTTCAAAATAATTTTGGACTGATGACTTGAATGTGCATGTAAAAAGACCTTTAGGCCAAGTTTACACAGGCATTCCAATTCTGATTTTTTCCACTAACTtgtccaatcagatcagctctttggtcaataattgggcaaaatatcagaattgtgctgcctgtgttaacacagccttaatatatatatatatatatattttaatcacTCAAGAATATTTACTGTGGATTGTGTAGTAAACTCATCAGGTTTACCCAGTAATAACATTAAGCTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU669715 lncRNA downstream 50792 23266592 ~ 23266797 (-) True G587186
TU669699 lncRNA downstream 67375 23249957 ~ 23250214 (-) True G587174
TU669523 lncRNA downstream 75020 23242330 ~ 23242569 (-) True G587004
TU669408 lncRNA downstream 172344 23144981 ~ 23145245 (-) True G586908
TU669390 lncRNA downstream 213116 23104177 ~ 23104473 (-) True G586890
TU669786 lncRNA upstream 72350 23392907 ~ 23402022 (-) True LOC110528816
TU669905 lncRNA upstream 228221 23548778 ~ 23549113 (-) True G587342
TU669960 lncRNA upstream 245241 23565798 ~ 23605412 (-) True G587393
TU670040 lncRNA upstream 307560 23628117 ~ 23628388 (-) True G587446
TU670050 lncRNA upstream 315853 23636410 ~ 23636776 (-) True G587456
XM_021608876.2 mRNA downstream 152883 23162590 ~ 23164706 (-) False LOC110527533
XM_021608875.2 mRNA downstream 183945 23106642 ~ 23133644 (-) True LOC110527532
XM_036983017.1 mRNA downstream 218979 23065989 ~ 23098610 (-) True LOC118965271
XM_036983018.1 mRNA downstream 218980 23065989 ~ 23098609 (-) False LOC118965271
XR_005052555.1 mRNA upstream 6489 23327046 ~ 23329616 (-) True LOC118965272
XM_036984417.1 mRNA upstream 72565 23393122 ~ 23552928 (-) False LOC110528816
XM_036983021.1 mRNA upstream 537951 23858508 ~ 23934010 (-) False LOC110527541
XM_036983022.1 mRNA upstream 537951 23858508 ~ 23934010 (-) False LOC110527541
XM_036983023.1 mRNA upstream 537951 23858508 ~ 23934010 (-) False LOC110527541
TU669359 other downstream 152380 23161894 ~ 23165209 (-) True LOC110527533
TU669376 other downstream 230452 23084490 ~ 23087137 (-) True G586878
TU669046 other downstream 505086 22808653 ~ 22812503 (-) True LOC110527529
TU668953 other downstream 697473 22610161 ~ 22620116 (-) True LOC110527522
TU668853 other downstream 847071 22463208 ~ 22470518 (-) False G586414
TU669777 other upstream 54455 23375012 ~ 23377701 (-) True G587242
TU671692 other upstream 1507931 24828488 ~ 24828700 (-) True G588987
TU671806 other upstream 1651056 24971613 ~ 24979107 (-) True G589093
TU672308 other upstream 1880849 25201406 ~ 25278874 (-) True G589529
TU672303 other upstream 1928123 25248680 ~ 25290605 (-) True LOC110527565

Expression Profile