RNA id: XM_036983022.1


Basic Information

Item Value
RNA id XM_036983022.1
length 5603
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110527541
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 23858508 ~ 23934010 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAAAGAGATCAGTCCTAACCTGCCCTAGCAGGAATAACGGTCCTTTTCGAACCACTATTTCTAAGGCTTTATTATCATTGCAAGGATCCCTGCACATTTCTCTCCACAATTGCTTACCGCTGCAGTCTCGTGTTATCACTACAACCGAAGTCAACCGAAGAGATACTACTATAGGAAATCAGATATTGAGCCTGcgtgccgctgctgctgctgctgctgattcAAGGAGTCGAGTCCATGCGAGCTGCCATCTGATCCACTCTTATCAATGAAGCACGAGATCATGGCGGATGGCCCCAGGTGTAAGAGGCGAAAACAAGCCAATCCAAGAAGAAAAAACGCAGCGTTGAATTACGAGAATGTGATGGATACTGGTTCAGAGACAGAGGATGAGGACAAGCTGTTGGTATCGGAGGAGGACGGCCTACTTAACGGGGTGGGCAGCCCTGCCAGCCTGAACAACCACGACGCTGGATCCCCGAGGGTGGGCCACGCCCTGATGACAAAGGAGGATGAGGACGATGACATGAGGGACAGCGGAGTAGACCATGTCTGGCATGACAACGACATGCTGCACGCCTCAGTCGACGGTACTGATGAAATGAAAGATGATTATGACACTATGGGGCCTGACGCCACTCTTCAGACGGTTGGAAACGGTACAGTTAAGAATGTTGTTGATTGCACTTCCGAGTTTGAGGAGTTCTTCGCCAAGCGTAGCAAGCTCCAGGAGGAGAGCCACGTGGTCAGCATCGCTGAGTACCTGCAGCGGGGCGACACTGCCATCATTTACCCAGAAGCACCCGAGGGAGAGGAGCTGTCCCGTATGGGCACGCCCGAAGCGTCTGAAACAAACGGCCAGGAGGAAAATGACCTGCCACCTGGAACTCCAGATGCTTTCGCCCAACTGTTGACCTGCCCCTACTGCGACCGGGGTTACAAGCGCTTGACATCGCTCAAGGAGCACATCAAGTACCGCCACGAGAAGAACGAGGAGAACTTCGCCTGCCCCCTGTGTAACTACACGTTTGCTTACCGCACTCAGCTTGAGCGACATATGGCCACGCACAAGCCCGGCAGAGATCAGCACCAACTGCTGAACCAGGGGGCTGGCAACCGCAAGTTCAAATGCACAGAATGTGGCAAGGCCTTCAAATACAAGCACCATCTGAAGGAACACCTGCGGAttcacagtgGTGAGAAGCCATACGAATGCCCAAACTGCAAGAAGCGCTTCTCCCACTCAGGCTCCTACAGCTCACACATCAGCAGCAAGAAGTGCATCGGCCTTATAGCAGTCAACGGGAGGATGCGCAACAACATGAAGACAGGCTCTTCCCCTACATCAGCCTCGTCCTCCCCCACTAACACCGCCATCACCCAGCTGAGACACAAGCTAGAGAACGGGAACGGAAACGGCAAGCCCCTGGGCCACCACCAGGACCAGAACAACCACCACCTGAACATCAAAACAGAACCACTCGACTTCAACGACTACAAACTCATGATGGCCTCCCATGGCTTCGGCGCGCCTGGGCCCTTCATGAACGGAGGGATGGGGGGAAATAGCAGCCCGCTAGGGATCCACTGCTCAGCCCAGAGCCCCATGCAGCACCTGGGGGTAGGGATCGAACAACAGCTCCTTGGTTACCCGTCCCTGAGCAACAACCTGAGCGAGGTCCAAAAGGTGCTCCAGATCGTGGACAACACTGTGTGCAGGCAGAAGATGGACTGCAAACCGGAGGAGATCTCCAGGCTCAAGGCTTACATGAAGGAGCTCGGGAACCAGATCGAGGAGCAGAAACAGGGACTGACGTCACAGGGGGTTCACCAGGTTGGTCTGCCAGTCGTCAGCCATAACGGTGCTACTAAAAGCATCATCGACTacacattagaaaaagtgaacgAAGCCAAAGCTTGTCTCCAGAGCTTGACCACGGACTCAAAGAGGCAAATTAGCACTATCAAACGTGAGAAATCCAACCACATGCTAGATTTAGGTACAGAGGATAAGATGCATGAGAACAACATTATGTTTACACCCTTTTCTTGCCAATACTGCAAAGAAGCCTTCCCAGGTCCAATTCCCTTGCATCAGCATGAACGTTACCTGTGTAAAATGAATGAGGAGATCAAGACTGTTCTCCAGACTAGCGAGAACCTTATGCCCACAAAACAGGGGATGTTTACGGAGAAGCATGCCCTCCTGCTCTCGTCCATTCTGTCTGAGAAAAGCCCCATCAACCCGTACAAGGACCACATGTCAGTGCTCAAGGCCTACTTCGCTATGAACATGGAGCCCAATTCAGAGGAACTACTGAAGATCTCCATAGCGGTCGGCCTTCCTCAGGAATTCGTCAAAGAGTGGTTCGAACAGAGGAAAGTCTTCCAGTACGGCACCCCAAGAACTCCACCACTAGAACAACGAAGGAACAACCATGCAGATATGGTATTAGCCGCAAACAACCACAGCCACACTCCCACTAAAGACTCAATGGCAGCTAGATCCCCAGTGTCCCTGATCAAGTGTAATGACCGTGACCGCAACCGTGACCACCATATCATGTCCCCCTCCATGGCAGAGCTCCATAACAACGTCAACAACTGTGAGAACCAACTCAGACTCATGAAAGCCAACACGTTCAGTGGACACACCAAACACATGGGTGACCACTCCAAAATGGACCACCTCTCAAGGAGCAGCACACCCTCTCCTTTGAACCTTTCCTCCACATCTTCCAAAAACTCCCAGAGTAGCTCTTATACTCCAAACAGCCTGATGTCTGAGGACCTGAACCTCAACATGAACCTGTCTGAACAACCACTGGACCTGTCACTGCCAAAGCTCATGAAGGAGCCCAAACACGCCATGACCGTGAAGAGCAGACCTAAACTAAATGGTATTAACCACCATGACCACTCCAGTGTTCCCTCCCCACGAGAACACTTCGAAGAGCCACTTAACCTGGCCTATCTCAAGAAGGAGTTTGAAGGCAGAGGCCAGAACCACCTCAATGGAGACTTCAACAAAAGTACCAGCCCCTTGTTCGGGATGAACCCCTTCGGTGCCAAACCTATGTACACGTCGCTTCCGCAACAGACTGCGTTCCCACCTGCCACCTTCATGTCGCCGATGCAGGCCAGCATGCCTGGGCTGAGGCCGTACCCAGGGCTGGATCAGATGAGCTTCCTACCACACATGGCCTACACTTATGCAACAGGAGCAGCTACCTTTGCTGAgatgcagcagcagcagaggagaaAATACCAGCGAAAGCCTGGTTTCCAGGGGGAGCTGCTCGACGGAACAGCCGATTACATGTCAGGACTGGATGACATGACCGATTCAGACTCCTGTCTGTCCCGGAAGAAGATTAAGAAGACAGAAAGTGGTATGTACGCGTGTGACTTGTGCGACAAAACATTCCAGAAGAGCAGTTCCCTCCTAAGACACAAATATGAACACACAGGTAAACGGCCACACCAGTGTCAAATCTGCAAGAAGGCATTCAAACACAAGCATCACCTTATAGAACATTCACGACTGCACTCGGGCGAGAAACCGTACCAGTGCGACAAGTGTGGGAAGCGCTTCTCTCACTCGGGCTCCTACTCCCAGCACATGAACCACCGCTACTCTTACTGCAAGAGGGAGGCCGAGGAGAGGGAGGCGGCCGAGAGAGAGGCCCGGGAGAAGGGCCACCTAGAGCCCACAGAGCTACTGTTGAGCCGGGCCTACTTACAGGGCATGACTCCTCAGGGCTACCCCGACCTGGAGGACCGCGAGGGCATTCTGAGGGAGGGCGGGATGAACGGAGGCATGAGAGATCGCCAAAAGGAAGTTGAAGGAACGTACGCGAAAATAGGACGTAGGGAAGAGGAttttgaggaggaggaagaggagagcgagAACAAGAGCATGGACACAGATCCAGACACGttgagggatgaggaggagaacgGCGAGCACTCGATGGACGATAGTTCTTTTGACGGCAAAACAGAAACCAAATCGGATCACGAGGACAACATGGAGGACGGCATGTAATAAAACTACTGCATTTAAAAAGCTTCCCATCTTACTTTTCTGTTCAGTATTGTTACCTGCTTGGTTTTAAACGCTGCTGTGTTGAAGCTGTACATGCACGTGCCTGAAGCTTCTAGGAAGCTTTGTATTGAAGGACTCAAGGGGTGGTGGTTGTATATGTCTGCCCGAGGAGACATTGATTTGAAGTTTGATTTTTGgggtggggcgggggggggggggggggggggggggggttggggggattGTGTAAGAAGAGGCTGCATTATGCAAAAATGAAAAATGAATAAATGAatccatttttaaaaaattgtacAGTATTAAGGCCTACAAATATGTGTGGTGCTAACATCCTAAAATCTCTGTGTCCCATAGTCTTTATAGCACAAACTAGTGACTTGTACAAATTGCACTTCGCTTCTATAATCActacaaaaataataaaaaagtattgcctatgtatatatttatacagtgTTGAAAAAAGCAGTAGTCTCCACGCTACAGTCCATCGGTTGTATTACTTATCTTTcacttaatgtgttgtctatTGTTTTTGCCCTGTCGTCAGGCCAGCTAGCCACACAGTTTTAGGCCTCAGAATTTCTCTGTGAAGGAACTTAACAGATATTATCTGTTTGATTTTTAAGATACTGAAGTCTTAAAGAGACCTTGAAATGGAAGGGGAAACAGTTtggcagcacagtacagtagatggAAGGATCGTGTGAACAATGAAGGAGAAAGCCTTTGTAAGGTGTTTTTGATAAGAAAAAGCCTTATATGCAAACCTTTTAATCTGTGTGTTTCTGCAAGTGCCATCCTTGTATTGTGTGAAAGGAGGGTGACACATGTTACCTCTTCACCAGCTTCGGTATTAAGAGATAGCTCACCTTGCTCTTTCAAGCACCCATGTCAGTATTAGGACACTAGGCAGCAGCTCCTTAGTTTACATATGTCTGTGCAATTTTCAGGTTTATTTCATTAACTTTTGTCAGTATTACACCAAACAATTTTTTGAAACAACAAAATTGCATTCATTTTGTTTGTAGGttgaataacattttatttatgtGGCCCATTTTATATTTcctaattttatttatttcatactgtagtgtacagtattatagttcttcaatatatagatatattttagTAAAAATGAACTTGGCGTTGATCATTGGGGCAAATTTTACGTAAAGAGAGCATTTATTGTGTTTTGAAACATTAATTGTGAAATGCAAATTTTCAACtatattattttgttttatttcctTTATTTTCCAATTACTGGAAATACCAAATTTGGGAACTTTTATACAATATTGTGAAAACACTGTATTTTTAACTAAAAAAATTCCACTTTCTTCatctttttttagtttttttttttgctaaaaaaATGAAGAGGGACTGTTAAGATACAATGTATGATACCATGACTGAAGAAAATCTTTCCTGAAATGTCTTTGTAAAAGTATTATTGAATTTTTCATTTGTAATTTCTCTTGGAAATGACCATGCTCGAATAAAAGTAGCCAAATTACAGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU670333 lncRNA downstream 15788 23842478 ~ 23842720 (-) True G587736
TU670311 lncRNA downstream 29409 23828843 ~ 23829099 (-) True G587715
TU670301 lncRNA downstream 37158 23821111 ~ 23821350 (-) True G587705
TU670293 lncRNA downstream 50796 23807330 ~ 23807712 (-) True G587697
TU670292 lncRNA downstream 51592 23806674 ~ 23806916 (-) True G587696
TU670473 lncRNA upstream 4003 23938013 ~ 23938319 (-) True G587849
TU670476 lncRNA upstream 6700 23940710 ~ 23941410 (-) True G587852
TU670501 lncRNA upstream 37743 23971753 ~ 23971977 (-) True G587877
TU670534 lncRNA upstream 61397 23995407 ~ 23995617 (-) True G587909
TU670546 lncRNA upstream 68226 24002236 ~ 24002475 (-) True G587921
XM_036984417.1 mRNA downstream 305580 23393122 ~ 23552928 (-) False LOC110528816
XR_005052555.1 mRNA downstream 528892 23327046 ~ 23329616 (-) True LOC118965272
XM_021608884.2 mRNA downstream 537951 23317589 ~ 23320557 (-) True LOC110527539
XM_021608876.2 mRNA downstream 693802 23162590 ~ 23164706 (-) False LOC110527533
XM_021608875.2 mRNA downstream 724864 23106642 ~ 23133644 (-) True LOC110527532
XM_021608890.2 mRNA upstream 464854 24398864 ~ 24447011 (-) False LOC110527544
XM_021608892.2 mRNA upstream 464854 24398864 ~ 24447011 (-) False LOC110527544
XM_021608889.2 mRNA upstream 464854 24398864 ~ 24447012 (-) False LOC110527544
XM_021608891.2 mRNA upstream 464854 24398864 ~ 24447012 (-) False LOC110527544
XM_021608894.2 mRNA upstream 529078 24463088 ~ 24467224 (-) True LOC110527545
TU669777 other downstream 480807 23375012 ~ 23377701 (-) True G587242
TU669359 other downstream 693299 23161894 ~ 23165209 (-) True LOC110527533
TU669376 other downstream 771371 23084490 ~ 23087137 (-) True G586878
TU669046 other downstream 1046005 22808653 ~ 22812503 (-) True LOC110527529
TU668953 other downstream 1238392 22610161 ~ 22620116 (-) True LOC110527522
TU671692 other upstream 894478 24828488 ~ 24828700 (-) True G588987
TU671806 other upstream 1037603 24971613 ~ 24979107 (-) True G589093
TU672308 other upstream 1267396 25201406 ~ 25278874 (-) True G589529
TU672303 other upstream 1314670 25248680 ~ 25290605 (-) True LOC110527565
TU672491 other upstream 1610725 25544735 ~ 25545418 (-) True G589705

Expression Profile