RNA id: TCONS_00036535


Basic Information

Item Value
RNA id TCONS_00036535
length 1896
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id XLOC_017065
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1200292 ~ 1203874 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTGTCAATTACAGATGTTTATCCTCAATTCAAAAACAGAACCACATTTGTTTTAGTAGTAAACCACTGTCTCTTGCTGTTCTGAACGGTGACTTTATTAAACACATTTGCATATGCTAATAatctatatataaaacaaaaacatgtctgACTGTTGCGACTCTCTGTCAAGAGCATTATTATTTTAGACACTaaatctgggcCTTATTGGCCGTCAGATACACAACAATCTCCAGCCAGAGGCACAGCGGTTTCTCTTCCACGTTTACATCGACACAGTTTATTCAAGATGAATTAGTGACGTACAGAAGAGCAGCTGAACGTGACGGTCAATACAGATCCCTTTGCAGCAGCTGCAGACTGTAAACAATCACTCTAGTAGTTGCACatctacacaaacaaacaagcagctCATCACATATTAGTGGTTAACATCCGTCAAGACAGACGACAAACATTTGAATGTAGtggattaaagattaaaaaacattaaagacGTCACTTTGAAATCATACTGACCATCTCTTTTCTGTTTTGGGTCGCTTCTGAACATTTTAACAGTAGATATATGCAGGTTTTGCATGCAAACGACATGATCAGAAGGTTCCGGTTCACACAGATGCATAAAAAACACTGCGTCACAGGTCAGTAGTGATGTCACTTTGTAATGAAGCACATGATACACGTGCATCATgtcactgtttttaacagaatcaTGTTTCTGTCATATATATTGAGACAGCAACAGCACATTTTCATGCTCTCAATAAAGCAACTAAGATTTGAAGTTTTTAGATGAAAACCGTGGcgtaaagcagtgtttctcaaccacgttcatgaagctttgcacattttccatgtctcctgaAGCAAACACAGCTGATTTAGCTTCATTGATTAGccgagactgaaagacctgtgatGGGTGTGACAGAtgaaggagacatccaaaacatgcagtgttggtggtcctccaggaacgtggttgggAAACAGTGGTGTAGATGGTGAATCTTTGAATGAAGTGATGCTCTCAGGACTAGGCATGGGATAGGCATCCTAAAGTATGTCTaagattttttattaacttttttttgttttgttttttaggataagcagaaaagatctccaaagatgccgttttaaattgtaaagaaatctgggaaagacaaatttgggaaatcctaacaGATTCCAGTAATCCTGGGCTAAAATCTGTGGTGGCTTAGAGGCCATCGTGATCAGATTTTCCCtctgatgaagttctggcagaTTCAGAAGACCCTGCAGTGATTCAAGATCGACTCAATCAATGCGACAACTTCAAACCACCATAGGGGCATGTCAAAACAGCTTACCACTGGCTTTACCATCAAGGCACGCTGAGAGCACAATGACCACTTCAGTTAATGTGTCTCGAGAAGGATTCATGTCAGGACGCAGGACAGTGAAAGTCACGGAGGGATGACGTCAAACTCTGGGTGAGTTTTGCCTTGTGTCGGTGTGTTTGGCACGTCTTTACTCAGATACTACAGTGTCACATGGAGATCGTGAGATTCTGGCAGTCTGTCAAGCTACAATAGTTTAGGGTTATTACAAATGGCACAGTGTGAGCCGGGACAACACTCCCTCAGACTTGGATGACTCCAGCAACCAGAAGTCCTGAATAAAAGAATCCTGCATGAAAACACCACAGACCCTCCTGCTGTCTGCTCTCAAGGAAAAACGTGGACTTCTGAAGCTCCTACACTTTGTGTTAGCTGCTCTCCAGAAGTGTTTCCTCCAGTCTTTCCTCCAGAAGGGTTTCCTCCAGAAGTCTTTCCTCCAGTCCTTCCTCCAGAAGTCTTTCCTCCAGAATGTTTCCTCCAGAAGTGTTTCCTCCAGTCCTTCCTCCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036534 lncRNA upstream 299912 896905 ~ 900380 (+) True XLOC_017061
TCONS_00034068 lncRNA upstream 443223 753868 ~ 757069 (+) True XLOC_017058
TCONS_00036532 lncRNA upstream 518000 681847 ~ 682292 (+) False XLOC_017056
TCONS_00036538 lncRNA downstream 151060 1354663 ~ 1355683 (+) True XLOC_017070
TCONS_00036360 lncRNA downstream 460156 1663759 ~ 1725048 (+) True XLOC_017074
TCONS_00036361 lncRNA downstream 957479 2161082 ~ 2162367 (+) True XLOC_017081
TCONS_00036362 lncRNA downstream 1010086 2213689 ~ 2214421 (+) True XLOC_017082
TCONS_00034099 lncRNA downstream 1058330 2261933 ~ 2266612 (+) True XLOC_017084
TCONS_00034074 mRNA upstream 1283 1196386 ~ 1199009 (+) True XLOC_017064
TCONS_00034073 mRNA upstream 74897 1121458 ~ 1125395 (+) True XLOC_017063
TCONS_00034072 mRNA upstream 110689 1088658 ~ 1089603 (+) True XLOC_017062
TCONS_00034071 mRNA upstream 352224 826459 ~ 848068 (+) True XLOC_017060
TCONS_00034069 mRNA upstream 377016 812012 ~ 823276 (+) False XLOC_017059
TCONS_00034076 mRNA downstream 68923 1272526 ~ 1276175 (+) False XLOC_017066
TCONS_00034077 mRNA downstream 68932 1272535 ~ 1276158 (+) True XLOC_017066
TCONS_00034078 mRNA downstream 74581 1278184 ~ 1287799 (+) True XLOC_017067
TCONS_00034079 mRNA downstream 112892 1316495 ~ 1327859 (+) False XLOC_017068
TCONS_00034080 mRNA downstream 113200 1316803 ~ 1323055 (+) False XLOC_017068
TCONS_00034041 other upstream 882187 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034086 other downstream 182146 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034116 other downstream 1704948 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034146 other downstream 3871321 5074924 ~ 5075054 (+) True XLOC_017116
TCONS_00034147 other downstream 3902965 5106568 ~ 5112043 (+) False XLOC_017117
TCONS_00034151 other downstream 4220359 5423962 ~ 5424096 (+) True XLOC_017119

Expression Profile

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