RNA id: XM_021608892.2


Basic Information

Item Value
RNA id XM_021608892.2
length 2213
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110527544
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24394807 ~ 24447012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGTTCACCCACTCAATAGTTTAAGTAATTTGCGTTGTTTTGGTCGTAGTCTGACAAAGAGAACTAgcagacagagaaagaaggaATCAAAAGAGAATTTCACATTTAGTGGAGCGGTAGCATGGCTGttttcaacaaaaaaatacatttggaaTAGTCTTTCACGTCGTCGTCAACCAGCAAGGACTATCGACAATTGCTTCTGTGTTTATGGGGGCGAAGTTCTCAAAGAAACGTCGGTGCGTTTCTTTCGGCCTGAAATCGGGAATTTTGTTCATTTGTGTCCGATTTGAATGTTGGTCGGTCTGACACTGGGAGCCGCCATGGCTGGTGCTGTCGGATCCTTTAGTGTCAATATAAGAATATGAAGATTAGCTATTGGACctgatattgttttattttgaGAATCATTCAACGTAAGCAGACTTGTCGTTCATGCCATTGTATGTAGCCTATTCCTCTTTACCGCGTTGTTTTTTTAATGGACTGGCAACTTTGAGAGGCCCAATTTTATGAGACACCTGGCTCAGGCCGTTATTTTCTAGAATGCCTTTATAACGTTAGCCTAGGTAAGTGAAAGGAACATACAAAATAAAAGGGATGACAGATTATTGCTGAATGTGGCTGGACGACAGCTCGAGAACAGACACAGCTGACCGGTTCGAAATTAGttcgctagctagctggctggctagctcgTGTTAGAACGATATAAGAAGAAGCAGACCTCTATCGTGGAATTGGCtaccaattttttttaaacattttttaaaataaaaaaacaacgcATTCTACATTCTTTGTATGACAGTCGAAGACTAATAGAACTGGAAAAAGTACGATTCGACTGAAGACGAAGCAGGGATAACTTGGATTGGAATATGTCGGGTCGGCCCAGAACCACCTCCTTCGCAGAGAGCTGCAAAGCGGTGCCGCAGCCTTCAGCATTTGGCAGTATGAAAGTCAGCAgagacAAAGATGGCAGTAAGGTGACCACGGTGGTAGCGACCCCAGGCCAGGGCCCCGACCGGCCGCAGGAGGTCAGCTATACAGACACTAAGGTCATCGGCAACGGCTCGTTCGGCGTGGTCTACCAGGCTAAACTGTGTGACTCCGGGGAGCTAATAGCCATCAAGAAGGTTCTGCAGGACAAGAGGTTCAAGAACCGGGAGCTGCAGATCATGAGGAAACTGGACCACTGCAACATAGTGCGTTTACGCTACTTCTTCTATTCCAGTGGAGACAAGAAGGACGAGGTGTATCTCAACCTGGTTCTGGACTACGTTCCTGAGACTGTGTACAGAGTTGCTAGACACTACAGCCGAGCCAAGCAGACCCTCCCCATGGTCTATGTGAAGATGTACATGTACCAGCTCTTCCGGAGCTTGGCCTACATCCATTCCTTTGGGATCTGCCATCGGGACATCAAGCCCCAGAACCTGCTGCTGGACCCGGAGACAGCCGTGCTCAAGCTCTGTGACTTTGGCAGTGCGAAGCAGCTGGTCCGTGGTGAGCCCAATGTGTCCTACATCTGCTCACGGTACTACAGAGCCCCAGAGCTCATCTTTGGGGCCACTGACTACACCTCCAGCATAGATGTATGGTCCGCTGGCTGTGTTCTAGCAGAACTGTTGCTAGGGCAACCCATTTTTCCCGGTGACAGTGGGGTGGATCAGCTGGTGGAGATCATCAAGGTTCTCGGCACTCCCACTCGGGAGCAGATCCGAGAGATGAATCCCAACTACACTGAGTTTAAGTTCCCTCAGATCAAGGCACACCCATGGACTAAGGTGTTCCGGCCGCGCACGCCCCCTGAGGCCATCGCTCTGTGCTCGCGTCTGCTGGAGTACACGCCCACAGCGCGCTTCACGCCCCTGGAGGCCTGTGCCCACACCTTTTTCGACGAGCTCCGGGACCCCAACCTCAAGCTGCCCAACGGGCGCGAGAAGCCCCTGCTCTTCAACTTCTCCACACAGGAGTTGTCCAGTAACCCCTCCTTAGCCTCCATCCTCATCCCCGCCCACGCCCGGAATCAGCCCGGGGCCTTCACTCCTAACAACGCCTCCGCACCCTCAGATGCCAACAGCGGAGACCGTGGCCATACCACCAATGCTGCCTCCGCCTCCAACGCCTCCACCTGAGACCTTCCTGACCCCGCTGCCCATGCCCGAGCTCCTGGACAACAACAGTGGCATGGCGGCACACCAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU671098 lncRNA downstream 46873 24347560 ~ 24351991 (-) True G588435
TU671067 lncRNA downstream 95822 24302806 ~ 24303042 (-) True G588414
TU671049 lncRNA downstream 105867 24292769 ~ 24292997 (-) True G588404
TU670901 lncRNA downstream 116881 24281660 ~ 24281983 (-) True G588265
TU670897 lncRNA downstream 123328 24275230 ~ 24275536 (-) True G588261
TU671205 lncRNA upstream 60997 24508008 ~ 24508388 (-) True G588537
TU671227 lncRNA upstream 77674 24524685 ~ 24524951 (-) True G588559
TU671229 lncRNA upstream 79982 24526993 ~ 24527314 (-) True LOC110527104
TU671476 lncRNA upstream 97531 24544542 ~ 24544764 (-) True G588793
TU671485 lncRNA upstream 107747 24554758 ~ 24555025 (-) True G588802
XM_036983021.1 mRNA downstream 464854 23858508 ~ 23934010 (-) False LOC110527541
XM_021608894.2 mRNA upstream 16077 24463088 ~ 24467224 (-) True LOC110527545
XM_036983032.1 mRNA upstream 20831 24467842 ~ 24492423 (-) False LOC110527546
XM_036983033.1 mRNA upstream 20831 24467842 ~ 24492424 (-) True LOC110527546
XR_002474073.2 mRNA upstream 72134 24519145 ~ 24527712 (-) False LOC110527104
XM_021608896.2 mRNA upstream 100011 24547022 ~ 24552025 (-) True LOC110527547
TU669777 other downstream 1021163 23375012 ~ 23377701 (-) True G587242
TU669359 other downstream 1233655 23161894 ~ 23165209 (-) True LOC110527533
TU669376 other downstream 1311727 23084490 ~ 23087137 (-) True G586878
TU669046 other downstream 1586361 22808653 ~ 22812503 (-) True LOC110527529
TU668953 other downstream 1778748 22610161 ~ 22620116 (-) True LOC110527522
TU671692 other upstream 381477 24828488 ~ 24828700 (-) True G588987
TU671806 other upstream 524602 24971613 ~ 24979107 (-) True G589093
TU672308 other upstream 754395 25201406 ~ 25278874 (-) True G589529
TU672303 other upstream 801669 25248680 ~ 25290605 (-) True LOC110527565
TU672491 other upstream 1097724 25544735 ~ 25545418 (-) True G589705

Expression Profile