RNA id: XM_021608914.2


Basic Information

Item Value
RNA id XM_021608914.2
length 1997
RNA type mRNA
GC content 0.45
exon number 13
gene id cryzl1
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24732997 ~ 24737996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTATCAACATTTTTGGGCGTACAGAGGAACTAAAGGAAAACATACAAATATTTGTTGATGCATGTAGTTAGCTAACTTTCTGCCCATTTTCTTTTAACCGAAGACCGTTAACTAATATAATATGTCCAAAATGACATGTATTTGTTTTGTAAGATATCTGCATACTCATTGACATGGTTTAACAATAATTTTGGCAGCACAAGTTTCTACTTTCATTGCACAGGGCTTTACTGTAAACTGGGTGAAACCGCTGCAGATGCGAAATTTGTCGTCCGGGAGACGAATGTACCCAGTGCCCTTGGTAGCAACCAGGTCAAAGTGCAAGTGAAGGCATGTGCCCTTAGTCCACTGGATATAAAACTCCACGAGGATCTAAAGTTCCAAAGGGACCTGGTGCCAGTAGGGAGGGAGATTGTTGGGATCGTCCTCCAAGTTGGGCCTAAGGTGACCTTTTTCCAACCTGATGATGAAGTTGTAGGAATTCTGCCCTTGGATACAGCAATGTCTGGTTTGTGCGATGCCGTTGTCATCAACGAGCATCATCTTGTGCAGAAGCCAGAGAAGTTGAGCTGGGTGGAGGCGGCAGGGGCCATTCGGGATGGACTGCGGGCCTATACAGCCCTCCATACCCTAGCCCGTATGGCATCCGGGCACACTCTGCTGGTGCTGGACGGAGCCAGTCCCTTTGGAGTTCTGGCCATCCAGCTGGCCCACTACCATGGAGTTAAAGTACTGGCGTCAGCCCTGTCCTCCGAAGACCAGAAGTTCCTGGAGCAGCTTCGGCCCAGCGTCGCCAGGGTGATAGGTGTGTGGGATGCCAAGGTAGACCTGGTGGATTCTTGTTTGGAAGAGACGGGCGGTCTAGGGGTGGACATTGTCATGGACTCCGGAGTGAGATTGCATGAGGAGGAGCCAGAGGCCAGGTGTCTTCTGCCCTACAAGCATGACATCATCACCCTGCTTGGGGTTGGAGGTCACTGGGTTACAACTGAGCAAAACCTGCAGCTGGACCCTCCAGATAGCCGCAGCCTCTTCCTGAAGGCCGCCTCCCTATCTTTCCTCAACGAGGAAGTGTGGGGGGCATCCAGTGCCCGCCAGGGGAGGTACCTCCACATCATGAAGGATATAGTGGAGAAGCTTTCCACTGGAACCTTAAGGCCCCAGCTAGAGGACCCGGTGCCTTTGTATGATGCCACCGTTTCTATGGAGATGGTGCAAAAGAAACAAGTCCGGAAGAGGTTGGTTATTCAACTCTGAGGCGGACAGACACTCTGGTCCAGCATTCCCCTTGTCAAAGGCAGGCTCCCAAATTCTGCCTCTCATATTTCCTATGTATTTGTGGCCAgcggtggtggaaaaagtacccaattgtcatacttgagtaatagTATAGATGCCGTTAAtagaaagtgaaagtcacccagtaaaatactacttgagtaaaagtctaaaagtatttggttttaaatgtacttcattatcaaaagtaaatgtaattgctaaaatatacttaagtatcaaaagtaaattccttatattacattttaagtttttaaaatgtagatagccagggacacactccagcactcagacattattttcaAAAGctgcatgtgtttagtgagtccgccagaccaTAGGGAGTAgagatgaccacgtgttctctttaAGTGCgtgaatttcacaattttcctgtcctgctaagtgtTCAAAATGTAGCAAGTACTTTTGGTtggcagggaaaatgtatggagtaaaaagtacaatattttctataggtatgtagtgaagtaaaagttacccaaaaaacaacttaagtagtactttatacCGCTGGTTGCCAGTCATTCCAGTACAATGTAAATATGTGCTAAGAGTCCGTTTCTGAGCTGATCAAAACCTATCAAATGAGATGGATATCTAATAATGTAATTATATTCAACACATTGAGGGTTGTCTTGTTATTAAAAACCTGAGGTTAACCCTCAAGCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU671593 lncRNA downstream 38343 24694379 ~ 24694654 (-) True G588905
TU671582 lncRNA downstream 51249 24681528 ~ 24681748 (-) True G588894
TU671580 lncRNA downstream 53299 24679410 ~ 24679698 (-) True G588892
TU671570 lncRNA downstream 65078 24667702 ~ 24667919 (-) True G588882
TU671500 lncRNA downstream 108074 24572388 ~ 24624923 (-) True G588817
TU671633 lncRNA upstream 21226 24759222 ~ 24760522 (-) True G588944
TU671657 lncRNA upstream 44305 24782301 ~ 24788109 (-) True G588965
TU671667 lncRNA upstream 62114 24800110 ~ 24802862 (-) False G588974
TU671671 lncRNA upstream 62114 24800110 ~ 24802862 (-) False G588974
TU671672 lncRNA upstream 62114 24800110 ~ 24802862 (-) False G588974
XM_021608917.2 mRNA downstream 9374 24721469 ~ 24723623 (-) True cbr1
XM_021608919.2 mRNA downstream 21837 24709221 ~ 24711160 (-) True LOC110527556
XM_036983034.1 mRNA downstream 41390 24585451 ~ 24691607 (-) False LOC110527549
XM_036983035.1 mRNA downstream 41390 24585451 ~ 24691607 (-) True LOC110527549
XM_036983036.1 mRNA downstream 101894 24585451 ~ 24631103 (-) False LOC110527549
XM_036983042.1 mRNA upstream 83199 24821195 ~ 24823487 (-) True LOC110528817
XM_036983048.1 mRNA upstream 177981 24915977 ~ 24965331 (-) False LOC110527560
XM_021608930.2 mRNA upstream 383272 25121268 ~ 25164357 (-) False LOC110527562
XM_036983057.1 mRNA upstream 477223 25215219 ~ 25242950 (-) False LOC110527565
XM_036983056.1 mRNA upstream 477223 25215219 ~ 25246690 (-) False LOC110527565
TU669777 other downstream 1355296 23375012 ~ 23377701 (-) True G587242
TU669359 other downstream 1567788 23161894 ~ 23165209 (-) True LOC110527533
TU669376 other downstream 1645860 23084490 ~ 23087137 (-) True G586878
TU669046 other downstream 1920494 22808653 ~ 22812503 (-) True LOC110527529
TU668953 other downstream 2112881 22610161 ~ 22620116 (-) True LOC110527522
TU671692 other upstream 90492 24828488 ~ 24828700 (-) True G588987
TU671806 other upstream 233617 24971613 ~ 24979107 (-) True G589093
TU672308 other upstream 463410 25201406 ~ 25278874 (-) True G589529
TU672303 other upstream 510684 25248680 ~ 25290605 (-) True LOC110527565
TU672491 other upstream 806739 25544735 ~ 25545418 (-) True G589705

Expression Profile