RNA id: XM_036983046.1


Basic Information

Item Value
RNA id XM_036983046.1
length 2412
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110527559
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 24872421 ~ 24902570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTGTTTCCAGGGGGACAGAGTTTGTGGTTGGATAGACAGGAAGTTGCATGTTTCACAGAaggatgtagctagctagctaaaagatAAACCtttatattgaaaaataaatgcgtCTATGACTCTGTGGTGCAAAGACACCAATGTTATTTATGTCTTGAGTTGAAAAGCAACGCGTTGGACCTGTTTGGTAGCATTCCACGTCGTCGGGATCCAGAAatcagGTCTGTAGTATTAGCTGACGGGCCGTGCAAACGGGGCTTGTGAAGGGAACCCACCGTGGTCGGCCGTAGTGCGTTGGCAGCCCTGCTATCCTCCAGACAGCCCTGGTCATGGGGCTGATAGCGTACATCAAGAGCCTGTTCATCGTGCAGCTGCTCGTTGGATTTGTGTTTGTGGTCAGCGGCCTCATCATCAACTTCATTCAGCTCTGCACCTGCGTCCTATGGCCCATTGACAGGCAGCTCTACAGAAAGATCAACACCCGCCTCTCCTACTCCCTCTGGAGCCagcTGGTAATGCTGCTGGAGTGGTGGTCGGGTACAGAATGCACCATATTCGCAGACCAGGCCACGGTGGACAAATTTGGCAAGGAGCACGTCATCATCATCCTCAACCACAACTACGAGATCGACTTCCTCTGTGGCTGGACCATGTGTGAACGCTACGGCGTGcttggaGCTTCAAAGGTCTTGGCCAAGTACGAACTGCTGAAGGTGcctctgattggctggacctggtACTTCCTGGAGATTGTCTTCTGTAAGAGGAagtgggaggaggacagagacactGTGTTCAAAGGCCTGGCCCAGCTAAAGGATTACCCTGAGTTTATGTGGtTCCTCTTGTACTGTGAAGGTACCCGTTTCACACCGAAGAAGCATGAGATCAGTATGGAGGTAGCAGAGAGTAAAGGTCTGCCGAAACTCAAATACCATCTACTGCCCAGAACCAAAGGCTTCACCACAACACTGAGCTGTCTCAAAGGCACAGTATCTGCTGTGTACGACGTGACACTAAATTTCAGAGACAAGAAGGTCCCAACGTTGCACGGCATCGTCAGTGGAAAGAAGTACATGGCCGATATGAATATCAAGCGTTACCCAGTGGAGGAAATCCCAGAGGACGAGAAGGAGTGTGCAACCTGGCTTCACAAGCTCTACCAGCAGAAGGATGCACTGCAGGAGCACTACGAGAAGGAGGGCAGTTTCCCCGGTCCCACCATCAAGCCCCCCCGTCGGCTGTGGACGCTGGTCAACTTCCTCTTCTGGGCCACCCTGCTTCTCACCCCCCTCCTCAACTTCGCCTGTGGGGTGTTTGTCAGTGgctctcccctcctcatcgtCGGCTTCCTGATCTTCTGCATCATCGccTCCATAGCAGTGCGCCGCCTGATCAGTGTGTCTGAGGTGAACAAAACCGGCTCTACTTACGGCAAAATGGAGGGCAAGAAGGAGAACTAGAACTCTTTACGGCAGTCACGCTACGGTCCCTCTACTGTCTACACTCGGTCTGAGCGGTTGTTGCGGTCCCTGCACAGATGCACCCTGTGCAGCCTCCCTCCTGCAAAAATAAGTTAAAACacagggtgggtgggggggggggggatataacTGAATAGACTTTTTAGACGTAAGTTAAAATATTGATTATGAttgtgcattttttttaaatggaattcTTGCAGTTGACTCGCTGTGAATGCATCCTTCCAGTGAGAGGGGGGTGACAGACAGCAGGACTGAATGGTAGATACCAGGGGGTGTATCTCTTTAACACCCAACGCTCCCTGCACCGCAGCTCGTGGTCCCCCCCATCGGTGTCGGTCTCCTCTGCACAGCCTTGTGGTTTCACCTCATCCACATGCGGCAGAATTGTCATGTTTCAGCGGTACCACTTCCTCCAACATGCACCCCACTTCCTGCCACATTAGCCCACCCTAAAGAAGTTTTCTCCACCTATCAAATATCCTCATTTTCTGCTTCAGTATCTCTGACTGGGCCAGCCCAATACCAGTCAGATGTCTCTCTGTAGTTTCAGCAAGGGGCTCTACTGTCTGGAGAAGACAGATTACCCAGCATGCTTTAGCTCCCCACCCTTACCCCCATGAAGGTTGGGTGTGGAGGTGAAGGAATCTTAACGCCTCTGAGCATTTGTTTGTCCGTCTCTTCATGAAACTTGTGCAGAATTCTGACCCAAATGAGATTGAGCATGCTGCTACTCCTCCCGTCCTTCCCAGAAAAGCACAGATGTGACGACCAACCTTGCACCAATGAAATGCAGTATTTAATGTTAATATAAAGCCAGGTTTGGCCTGAGTTGATTTCCAAATTGCTTGTAGATCCCAGAAATACTGATTGTTATAAACCAATAAAACATTTATCGTTTGGTTGCCAATGAATAGACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU671403 lncRNA upstream 36553 24835598 ~ 24835868 (+) True G588720
TU671400 lncRNA upstream 39410 24832755 ~ 24833011 (+) True G588717
TU671399 lncRNA upstream 42123 24830088 ~ 24830298 (+) True G588716
TU671366 lncRNA upstream 69554 24800584 ~ 24802867 (+) True G588687
TU671350 lncRNA upstream 161357 24710319 ~ 24711064 (+) True G588676
TU671447 lncRNA downstream 19707 24922277 ~ 24922579 (+) True G588764
TU671448 lncRNA downstream 21079 24923649 ~ 24924230 (+) True G588765
TU671449 lncRNA downstream 23361 24925931 ~ 24926133 (+) True G588766
TU671791 lncRNA downstream 65603 24968173 ~ 24968378 (+) True G589081
TU671819 lncRNA downstream 85440 24988010 ~ 24988480 (+) True G589105
XM_036983044.1 mRNA upstream 1510 24837284 ~ 24870911 (+) False pdxkb
XM_036983043.1 mRNA upstream 1510 24837291 ~ 24870911 (+) False pdxkb
XR_005052556.1 mRNA upstream 4918 24837293 ~ 24867503 (+) True pdxkb
XM_021608923.2 mRNA upstream 52117 24811375 ~ 24820304 (+) False LOC110527557
XM_021608924.2 mRNA upstream 52235 24811375 ~ 24820186 (+) False LOC110527557
XM_021608927.2 mRNA downstream 95352 24997922 ~ 25115994 (+) True LOC110527561
LOC110527563 mRNA downstream 296596 25199166 ~ 25203003 (+) False LOC110527563
NM_001124398.1 mRNA downstream 300550 25203120 ~ 25213611 (+) True spp2
XM_021608933.2 mRNA downstream 399230 25301800 ~ 25312514 (+) True LOC110527567
NM_001124532.1 mRNA downstream 412630 25315200 ~ 25321925 (+) True LOC100136274
TU670255 other upstream 1064421 23807722 ~ 23808000 (+) True G587660
TU670005 other upstream 1251052 23611352 ~ 23621369 (+) False LOC110527540
TU670007 other upstream 1251052 23611352 ~ 23621369 (+) False LOC110527540
TU670023 other upstream 1251187 23611352 ~ 23621234 (+) True LOC110527540
TU669156 other upstream 1857301 23010061 ~ 23015120 (+) True G586685
TU671438 other downstream 1761 24904331 ~ 24905581 (+) True G588755
TU672520 other downstream 701035 25603605 ~ 25608606 (+) True G589734
TU672748 other downstream 1101360 26003930 ~ 26025309 (+) True G589933
TU673811 other downstream 1649984 26552554 ~ 26553542 (+) True G590936
TU673831 other downstream 1674837 26577407 ~ 26577933 (+) True G590949

Expression Profile