RNA id: XM_021608938.2


Basic Information

Item Value
RNA id XM_021608938.2
length 1376
RNA type mRNA
GC content 0.50
exon number 8
gene id mdh1b
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25337411 ~ 25341310 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATGGCTGGAAACCACTTGCAAGGAAAATGGCTGGCAGCATGAGCATTCTCCCATGATATGGAGGGAACTGATCAACCGTGGGGGTAAAGGAATGCTTCTAGGGGGCTTCAGCGACTTCCTAGAACATGTACAGATATGACGACGGAACTGATGATGAAGATTGCAACAGAGAACCTGCTGACACGGGAGCTgtgcatgaaggaggaggtgtacCATCAGAGCCTCATCAAGCCACTGCACATATGGATCAGCAGTGCTCTTAACCCGACCTGCTACATCCTGATCCCCCAGCTGTTTGCCCCTGGGGTATTCCGGGACGCCCCAACCATCAGCCTCCACCTGTTGGATGTGGGGGCCATCGAGGAGGACCTGCAGGGGGTCAGGATGGAGACAGAGGACCTGGCCCTCCCACAGCTCCATAAAGTCACTGTCTACACAGAGCTGGACCAGGCCTTCCAACAAGCACACTTCATCATCCTCCTGGATGACAGTTGGCCTGAGTgtggaggggaggatgaggaagaaagCAAGgtGAGGAAGGTGTCGGAGCGTTACCAACAGTATGGGCGCCTTATCGACGAAAGGGCGCACAAGAACGTTGCGGTGATTGTGGCTGGGAACACCTTGGTTAACCTGAAGTGCTCCCTTCTGCTAGAGAACGCTCCCTCGGTTGACAGCGGACACTTTGTCGGCATGGCAACTCAACTGGAGTACGAAGCCAGAGCCCACATTGCACAGAAGCTATCTGTGAAGACTGCAGATGTGACAGATGTCATCGTTTGGGGTAACATCAGCGGCAGTTCCCATGTTGACCTGCAGAGGGCAAAGGTTTTCCAATACGAAGGGGCCATCTGGGGACCATTAGATTTTTCTCAGCCAGTCCTAAAGATGATATATGACAGGAAATGGCTACAGACTGACTTCCTGAATTTGGTCAGTTCCCAACGTGCCACTGTAGCCTCCAAGTCCCAGAGGGCCACAGCCATATCAGCCACTAATGGGATCATTGCAGTTCTAAAGGCCTGGAACTGCAACTCTTCTGCAGAGGAGGTCTTCTCCTTAGGCATACTCAGCACAGGACAGTACAACCTCCCAGCTGGTGTAGTCTTCTCAATGCCAGTGAGCTTCCAGGATGGTAGATGGTCCGTGTTGTCTGATGTCATCATTGGTGATGAGATGAGGGCCAAACTGCAGATTGCTGCAGACCAACTCAGGGAGGAGAAAGATCTTGCATCAAGGACAAGAAAAGACACTGCATGAATTTACACGACTTGCTGAAGCGCTTTCTGTCAGAGTTGTTTgttcaaaaaaaataaaaaatagtattTATACATTCATTTGCATATTAAAGGTTGAATGTATTTGATGACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU672022 lncRNA upstream 2331 25333156 ~ 25335529 (+) True G589292
TU671946 lncRNA upstream 11224 25325549 ~ 25326636 (+) True G589229
TU671974 lncRNA upstream 27259 25272304 ~ 25310601 (+) True G589252
TU671967 lncRNA upstream 80696 25254255 ~ 25257164 (+) True G589245
TU671961 lncRNA upstream 96187 25240576 ~ 25241673 (+) True G589239
TU672042 lncRNA downstream 17597 25358907 ~ 25359795 (+) True G589305
TU672072 lncRNA downstream 58488 25399798 ~ 25400173 (+) True G589330
TU672088 lncRNA downstream 65400 25406710 ~ 25406984 (+) True G589339
TU672096 lncRNA downstream 77145 25418455 ~ 25419032 (+) True G589347
TU672107 lncRNA downstream 90040 25431350 ~ 25431583 (+) True G589358
NM_001124532.1 mRNA upstream 15935 25315200 ~ 25321925 (+) True LOC100136274
XM_021608933.2 mRNA upstream 25346 25301800 ~ 25312514 (+) True LOC110527567
NM_001124398.1 mRNA upstream 124249 25203120 ~ 25213611 (+) True spp2
LOC110527563 mRNA upstream 134857 25199166 ~ 25203003 (+) False LOC110527563
XM_021608927.2 mRNA upstream 221866 24997922 ~ 25115994 (+) True LOC110527561
XM_021608939.2 mRNA downstream 1401 25342711 ~ 25346307 (+) True LOC110527571
LOC110528820 mRNA downstream 425917 25767227 ~ 25769101 (+) True LOC110528820
XM_021608947.2 mRNA downstream 462240 25803550 ~ 25874508 (+) False LOC110527576
XM_021608945.2 mRNA downstream 462241 25803551 ~ 25874508 (+) False LOC110527576
XM_021608946.2 mRNA downstream 466186 25807496 ~ 25874508 (+) False LOC110527576
TU671438 other upstream 432279 24904331 ~ 24905581 (+) True G588755
TU670255 other upstream 1529860 23807722 ~ 23808000 (+) True G587660
TU670005 other upstream 1716491 23611352 ~ 23621369 (+) False LOC110527540
TU672520 other downstream 262295 25603605 ~ 25608606 (+) True G589734
TU672748 other downstream 662620 26003930 ~ 26025309 (+) True G589933
TU673811 other downstream 1211244 26552554 ~ 26553542 (+) True G590936
TU673831 other downstream 1236097 26577407 ~ 26577933 (+) True G590949
TU675056 other downstream 2141740 27483050 ~ 27483796 (+) True G592134

Expression Profile