RNA id: XR_002474141.2


Basic Information

Item Value
RNA id XR_002474141.2
length 3979
RNA type mRNA
GC content 0.47
exon number 10
gene id retreg2
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25346396 ~ 25358486 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtgacgagcAGTAACATCGGGGTCCTACTTTTTTTGGGGGTTAACAGTGACGGACCTGCGTGGATCTATCCGCCTATCCATACCCCGTGATCACCAAAACAACATAACAAAGTGGGGGGGAAAAAATGGCGAGCGGAGAGGAGGCTAGACGCCCCTCGGTTTCTTCCTCTGCCGTCCTCGAGGACCTGTTCCCTGCCGGAGGATCAGAGCCAGTATGTGGGGACGAGAACCCTGAGCTTGTGCAACTGCGAGAGCGTCTCCAAGGCTGGCTATCGCAATATGAGCCGTTGCTGTTATGGGTGCAGAGGCTGCTTGTTTGGGAAAGGCCGCTCTACAGCATCTTTGTTGCGCTCACGCTGAACACCTTGTTCTGGCTTCTGTCTTCGACGTCCCTgcgtcctctcttcctcctgagTCTTTCCATTCTAGGGCTCATGCAGCTGGAGAGATGGAAGCATAAATTACCTCTTACAACCGTTCAGTATCCTGAGGCCAACCCACTGGAAAGAGAGGCCATGAGTGTGCAACCCCGGCTCCTCAGCATTCCAGAGCTCAGCCACCACCTGGTGGAGAGCTACCTCTACTGCTGCCTCTACGTCCAGGAGATGCTGCAGTACAAAAGGCAGAACCACGGAAAGTTCTGTGCTATGATGTGCTCTGGTTGTTCTGTGCTCGCTGTGGTGGGACACTACGTACCCGGAATCATGATATCCTATATCATCGCGCTGAGTGTGTTGGTGTGGCCTCTGGTGGTGTACCACGAGCTGATCCAGCGGATGTACACGGGCCTGGAGCCCATCCTGATGAAACTGGACTACAGTATGAAGGGAGACACGCAGCACCACAAGCACGATAAGAGGAaggtgaagaaggaggtggaggaaggggaTGAGCCCAGggctgagacagagagcgagagcgaggagGAGCTATCCTGCTTTGCCCCACTGGTGGATGCAAAGACCACCGCCCTGGCAATGGCCATCACTGACTCGGAGCTGTCTGACGAGGAAGCATCCATTTTGGAGAGTGGGGGGTTTTCCGTATCCAGAGCTACCACCCCACAGCTCACAGACGTCTGTGAAGACCTGGACCAGCAGAGTGTGCACAGTGACCCAGAGGAGGCCTTCCtaagggacctacctgaattccCCTCGATTGACGAGTTCCCCATCGAGCACAGCCTCCTCCACTTCCCATTGCGTGGTCAGGGCCAAGGGGACGGGGCCGCGGCTGGGGGAAGAGAGCCCTCGGAGGGGGAGCCCATGAGCCCCGCCAGCCTCCTCATCCAGCACCTGGCCTCCCCGCTCCACTTTGTCAACACACACTTCAACGGACATGGACGGCCGCCAGGTGGGGACCAGGGACCACTGCTGGGTGCTGGGAGAGCGGAGGTGGTGGTGCATGGGGGGGAAGGGGAATCCCAGGCCCCAAGGCCGTCACTGGAAGCCCTGAGTGAGGAGATCGTGAACACGGCAATCTCCACCGTGGTACAGAACACACTGTCGGCCCTGCTACACTCCACCGAGGCAAGTAAGGGCCCATCCATCGCAGATTTCCTGCCCACCGACATGCCCCCCAGCGCCCTGGAAAGCCCCACCGCCCCTGTCGCCGAGACAGAGGAGGCAGAAAAGGACCAGGATGTGGTCGCTGCAGAGTCTGAGAGGAGTGCCGAGGAGATGCCGGACGACATGTTTGTACCGACCGAGGACGAGGACTTTGAGCTTCTGGACCAAAGTGAACTGGAGCAGATGGACGAGGGTCTGCTGGGTCTTCTCAGTCCTGATGGACATAGGGTAGTGGGAGTGGCCTCTCCCGCAGACACACACCCATCTCCGACGCACCAACCGGAATCCTTCTAGCGTCCTCATCACCGCTCATACCCTACTGTTTTTGTTTTACGTAGATATACATTATACAGATATATATGTACACTTATCAAAGTGTCTGTGGTTAGTGGCAGTTGGTTAGTGATTGAGATCACTGTGGTTAATTCTGCCTCCACACGATCACTGTGGTTGAGTCCAAATGGCActttattccctttatagtgccctactttttaccagggcccatagggctctggtcaaaagttgtgcactatagctggaatagggtaccatttgggattaAACTTGTTTCTTGAGGCTTGGGCTTGATGGTGCCTGTGTTTGACAGGCTTTTATTGCTTTTAACCAAGGGAACAAGCCATCTGAGATTTGGGAGCTACTAGTAATATGTTTGGGTGGCAGGAGAAGGGTTTGGTGGAACCTCGTCCCAGATTTGTTTCTGCTGTATCTTGTAATGCCAAATGGAGTTGGGTACATTACAGCACAATCTGCAATGGGTCCAGATCCACAGCCACCCTTCTTGAAGGAAATTATTAACAGATTATATGTAGATGGATTCTTTGAGAGAAAGAAAAGGTTTTTGTTTTGATTATATTAATATATATgataaattatttttatttaatggtCAGTTTAATGGAAATCTATTGTCGTCATATGGGAATTTGAAAGTAATAAAGATTCTCTATGGCCAGTAACCCAAGTTGATTCTACAATCAGTATTGGATTTAGATCATTAGCGAAACACACGTTCTCATGTAGGCACAAATACGTACGTTTGGGAGTTTCATTGAAGGTAGTTTATTAACCAGCAACCCCTGAAGTAAGTTCAGCACTCAATTGTGAAATCTCCCAAACAAAACTTAGTCTGTAGTTATTAGCCATACACAAAGGagttatgccatctattttaacTGTCTATTAAAATGACATTTCGGGTGTATTGGACATTGTAGGCACAAATACGTATGTTTGGGAGTTTTATTGAAGGCAATTTAATGACCAGCAAGCCCCTCAAGTAAGTTCCACACTCAGAGAAATTGTGAAATCTCAAACAATAATTTACAATAGATCTTTGAATTTTagtgtgtattttttttaaatccccaaACCAggtgatggtaaaaaaaaaatctttacccATACAAAACATACTTACTGTGATATGCTGACAACCTTTTCAATTGCTCATTGTCAACATCTCAAAGGTCTATATTTTGTTAGTTGTATTCTGTAATGGTTGTAAACGAATGCAAGTGCTATTTCACCACCACCAATTGCTTAATATGTGTACAACTTGCAAATGGCAAAACATTTGTAACACTGTGGGAGGCAACCAGTCTGTCTTGAGACTAGGTACCTAACATCTGAAGAAGGTTCATAATGCAGGTTTTGTCATGGCAATCCCACATACAACTGCCATTCGCTATGACAAATGATTGAAAGTAATAGGAATACATGCATTGCATTATCTGTCAAAAAGGTATGTTACCTAGGTCCTATGTAACAATGATGGGAATTCTTAATTTCATAAATTGGTTACTAGTGGGAATTCAGCTCAACCAACTTAACTAGGACAGCTTTATTGCGAGTGTGCCTATCTGATCTGAATCTCAGGAGTGGGATGTACTTTAGTTTGCGCAATGGAAGATACCGTTGCACGTAGAAACTAATATGTAGATGCAAATTAATGTGAGGTAGAAAATGGCGTCCACCAATGTCTAGCCTAAAGTTCCCCAACCCAAGTTGTCCCTGTGCACTGTATTGTAATTTTGACCAACCTTTTTCCTGGCCAATGCCTTCCAAGCACTTCTGTAAAAGGTTTCCCTCAAAATGAGAGCAATTTAACATTGCATGTGAAAACCAAGCATTAAAAATGCAACTTGGAGGGAGCAAGATCTTGGACTTGTAGCAAGCATGCAATTTGTATGTTGCAGCTTAAATAGAATTTCTAGAACACTAAATTGCCCAATGAGGCAATTTAGTGTGATTTCATTTAAAAGGTCATTTGTTTTACTATAATCCCACTGTAACCAACTATAAAAAGACATTAACAAATGTGTTATAGAAATGTTTGCTTATGCTTTTACCGCTTCTTGATCTATAAAGGCACTTAACAAGAAATGTA

Function

GO: NA

KEGG:

id description
K23880 RETREG; reticulophagy regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU672355 lncRNA downstream 20116 25325285 ~ 25326280 (-) True G589575
TU672370 lncRNA downstream 31096 25301454 ~ 25315300 (-) True G589590
TU672290 lncRNA downstream 131872 25203119 ~ 25214524 (-) False G589525
TU672417 lncRNA upstream 48225 25406711 ~ 25407033 (-) True G589631
TU672425 lncRNA upstream 55520 25414006 ~ 25414225 (-) True G589639
TU672434 lncRNA upstream 66376 25424862 ~ 25425294 (-) True G589648
TU672438 lncRNA upstream 70260 25428746 ~ 25428977 (-) True G589652
TU672392 lncRNA upstream 73895 25432381 ~ 25459552 (-) False nrp2a
XM_021608935.2 mRNA downstream 9036 25327135 ~ 25337360 (-) True fastkd2
XM_036983049.1 mRNA downstream 55552 25215219 ~ 25290844 (-) False LOC110527565
XM_036983051.1 mRNA downstream 55552 25215219 ~ 25290844 (-) False LOC110527565
XM_036983054.1 mRNA downstream 55553 25215219 ~ 25290843 (-) False LOC110527565
XM_036983058.1 mRNA upstream 421 25358907 ~ 25361238 (-) False LOC110528818
XM_036983060.1 mRNA upstream 421 25358907 ~ 25361247 (-) False LOC110528818
XM_036983059.1 mRNA upstream 421 25358907 ~ 25361269 (-) False LOC110528818
XM_036983061.1 mRNA upstream 421 25358907 ~ 25361270 (-) True LOC110528818
XM_021608940.2 mRNA upstream 4955 25363441 ~ 25371970 (-) True cnppd1
TU672303 other downstream 55791 25248680 ~ 25290605 (-) True LOC110527565
TU672308 other downstream 67522 25201406 ~ 25278874 (-) True G589529
TU671806 other downstream 367289 24971613 ~ 24979107 (-) True G589093
TU671692 other downstream 517696 24828488 ~ 24828700 (-) True G588987
TU669777 other downstream 1968695 23375012 ~ 23377701 (-) True G587242
TU672491 other upstream 186249 25544735 ~ 25545418 (-) True G589705
TU673308 other upstream 799507 26157993 ~ 26158305 (-) True G590443
TU674230 other upstream 1219683 26578169 ~ 26585507 (-) True LOC110527590
TU674725 other upstream 1807689 27166175 ~ 27166468 (-) True G591808
TU675224 other upstream 2124471 27482957 ~ 27483780 (-) True G592298

Expression Profile