RNA id: XM_036983059.1


Basic Information

Item Value
RNA id XM_036983059.1
length 689
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110528818
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25358907 ~ 25361270 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGCATACCACTTGAGACTCCTGCTCCTAATATAGACCCAACTGGTTTGTGGGATAGGCATGGGGAGAGGAGCCTGCGTGTAGCAGGACCTAGCGTTTTGTTGTTGGGTGCGTAGTGCCCAACTCTTTTATGGAGAGAATACTTATATGGCAGATCTCGTTTCAAGAGATGCGTGAACAGTGGTTGTTTCGGTCGAGGGCGTGGTCAAGTGCCTCCCTGACGAGACCCCCGGAGACCGTCATCGATCGCATCATTAAGGCTGAGGTCCATCGGCTGGTCCTGGTAGACAAAGAGGACGTGTGCAGGGGGATCATCTCTCTCTCCGACCTGCTCCAGGCCGTGGTGTTAACCCCGGCAGGTAATGACACCCTTTTAGCCTCAAAACACCTGTGGGAGTCAGGCCCTCTTGCCCTACCTCCATCTTCCACCGCCTCTAGCCCCACCTCCCCGGCCCAGAGATTTCAAGCAAATCAAACTGAGAACAATGTGAAGTGGATGAAAAGGGAGACCGTTTTCAAAATGTCATCGTACTGCTGTGGAGAGAAACATAATCCGTAACAATCAACTGTATCAGTTGAGTTCAATAAAACACAATTGTCCTTAGTTGCATTTGATCAAATTGATGATGTAAGTTTGTGTTACTTTGTGTTGCGCTGAATTTGTGCTTTATTAAACATGTTCTAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU672355 lncRNA downstream 32627 25325285 ~ 25326280 (-) True G589575
TU672370 lncRNA downstream 43607 25301454 ~ 25315300 (-) True G589590
TU672290 lncRNA downstream 144383 25203119 ~ 25214524 (-) False G589525
TU672417 lncRNA upstream 45442 25406711 ~ 25407033 (-) True G589631
TU672425 lncRNA upstream 52737 25414006 ~ 25414225 (-) True G589639
TU672434 lncRNA upstream 63593 25424862 ~ 25425294 (-) True G589648
TU672438 lncRNA upstream 67477 25428746 ~ 25428977 (-) True G589652
TU672392 lncRNA upstream 71112 25432381 ~ 25459552 (-) False nrp2a
XM_021608936.2 mRNA downstream 421 25346396 ~ 25358486 (-) False retreg2
XR_002474141.2 mRNA downstream 421 25346396 ~ 25358486 (-) True retreg2
XM_021608935.2 mRNA downstream 21547 25327135 ~ 25337360 (-) True fastkd2
XM_036983049.1 mRNA downstream 68063 25215219 ~ 25290844 (-) False LOC110527565
XM_021608940.2 mRNA upstream 2172 25363441 ~ 25371970 (-) True cnppd1
XM_021608943.2 mRNA upstream 10841 25372110 ~ 25399400 (-) False abcb6a
XM_036983063.1 mRNA upstream 10841 25372110 ~ 25399400 (-) False abcb6a
XM_036983062.1 mRNA upstream 10841 25372110 ~ 25414754 (-) True abcb6a
XM_036983064.1 mRNA upstream 71102 25432371 ~ 25498133 (-) False nrp2a
TU672303 other downstream 68302 25248680 ~ 25290605 (-) True LOC110527565
TU672308 other downstream 80033 25201406 ~ 25278874 (-) True G589529
TU671806 other downstream 379800 24971613 ~ 24979107 (-) True G589093
TU671692 other downstream 530207 24828488 ~ 24828700 (-) True G588987
TU669777 other downstream 1981206 23375012 ~ 23377701 (-) True G587242
TU672491 other upstream 183466 25544735 ~ 25545418 (-) True G589705
TU673308 other upstream 796724 26157993 ~ 26158305 (-) True G590443
TU674230 other upstream 1216900 26578169 ~ 26585507 (-) True LOC110527590
TU674725 other upstream 1804906 27166175 ~ 27166468 (-) True G591808
TU675224 other upstream 2121688 27482957 ~ 27483780 (-) True G592298

Expression Profile