RNA id: XM_021608943.2


Basic Information

Item Value
RNA id XM_021608943.2
length 4697
RNA type mRNA
GC content 0.49
exon number 20
gene id abcb6a
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25372110 ~ 25414754 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGGCAGTTGTGTCATTGTGAGAAAATGCCGATTGCTGAGTCATGGAATACGTCGCTCCACGCAAGCCGCAAGAAGAATAAGAACAGTTTACATGTGGATACAACAAGATgaccattattgttatttttgacTTGTAAAATCTCTTTGCGTAAAACGAGTTATTTGTTGGGAGCTTCAATTCACTAAATTGCTTTCCAGCACCAGCTTGTCTTGAGAATCTTCCAGCCACCATGGTAGCAGTGCAAAGCTACTGTGAAGCCAGTGCTTCCATCTCTGAAGCCTGGCTGGAGGGCGGCATCTCGCCCTGCTTCTACTTCACCCTGGTGCCCACCGTCTTGCTTACCCTCTCCTTCTTCTTCGGCACCTTCCACTGCGTCTGCTACCGCCGCTACGGCACCGAGATGGAGCCCAAGTTCGTTCCGCGCTCGCGCCTCTATGGCCTCCAACTGGCAGTCtccctgctcctgctgctgcagtTCCTGGGGGGGCTGGTTTGGAGGGCGGCCGGGGGAGGGGAGCTCCCTGGCTATGTGGTGCTGTACGGCCTCCTGTCCATGCTGGGCTGGGCCTGGGCCGTGGCCCTGTtaaggctggagaggaggagggtgctGGTGAGGGACCGGACACGTGGCCACAGCACGGTGCTGCTGCTCTTCTGGGCTGTGGCATTCTCAGCGGAAAACCTGGCCTTCGTCTCCTGGGCCAGCCCCTACTGGTGGTGGGGCCTGGAGAACACACAGCAGCAGGTGGAATTTTCTCTGTGGTTGATGCGCTACGTCGGCACGGGCACACTCTTCTTCCTGGGCCTGAAGGCCCCGGGATTACCACGGAGACCGTACATGCTCCTGATCAACGAGGACGAACGCGACGTGGAGGGCGGCACTGGCCAGCTCCTGTTGGATGGGGCAGAGGAATCCCAGTCTACCTGGCATGACTTTGGGCAGAAGGTGCGTCTGCTGGTGCCCTACATGTGGCCCAGAGGCAGCATGCTGTTACAGGGCCTGGTGCTCCTCTGCCTGTGCCTGCTGGGTCTGGAGAGGGTCATCAATGTCTTTGTGCCCATCTACTACAAGAACATTGTGAATGAGCTGACTGATGGAAGCAGCTGGAAGACCTTGGccaccactgtgtgtgtctaCGTCTTGCTCAAGTTCCTGCAAGGTGGAGGGGCAGGTGCTTCCGGCTTCGTCAGTAACCTGCGCTCCTTCCTGTGGATCCGCGTGCAGCAGTACACCAACCGGGTGGTGCAGGTGCGTCTGTTCAGCCACCTACACTCACTGTCTCTGCGCTGGCACCTGGGGCGACGCACCGGGGACGTCCTGCGAAGCATTGACCGCGGCACCTCCTCCATCAACAGCCTGCTCAGCTACATTGTATTCAGCATCTTCCCCACCATCGCAGATATCGTCATCTCCATCATCTACTTCATCACCTACTTCAACGCCTGGTTCGGACTCATCGTATTCGTCTGTATGTTCCTCTACCTCACTCTTACCATCATCATCACGGAATGGAGGACCAAGTACAGGCGAGACATGAACACCCAGGACAACAACGCAAAGTCCAAGGCAGTGGACTCCCTGCTCAACTTTGAGACGGTGAAGTACTACAACGCAGAGAATTACGAGGTGAACCGTTTTGAGGACGCTATTCTGAAGTATCAGATCTCAGAATGGAAGACACAAGCCTCTCTGGCCTTcctgaaccagacacagaactTGATCATCGGTTCCGGCCTATTGGCCGGGTCACTGCTGTGTGCCTACTTTGTCCAGGAGGGCAAGTTTAAGGTTGGAGACTTTGTCCTCTTCGGCACCTACATCATCCAGctctacacccctctcaactGGTTTGGAACCTACTACAGAATGATCCAGAGCTCCTTTATCGACATGGAGAGCATGTTTAAGCTCtttacagaggaagaggagGTGAAGGATGCGGTGAACGCAGGGAACCTTCTCTATAAACTGGGAAAAGTGGAGTTTGAGAATGTATACTTTAACTACACTGACGGgaagGAGATCCTTAAGGATGTATCATTTACTGTGCAGCCAGGCCAGACTGTTGCATTGGTTGGCCAGTCAGGGTGTGGTAAGAGCACCATCCTTCGCTTGCTCTTCCGTTTCTACGACGTCCAGGGAGGATGCATCCGCATCGATGGCCAGGACATCTCTAAGGTGAAGCAGGTGTCTCTGCGTGCCCACATCGGCGTGGTGCCCCAGGACACGGTCCTCTTCAACGACAACATCCGCAACAACATCCGCTACGGACGCATCTCTGCCAGCGACCACGAAGTGGAGGAGGCGGCGATCGCCGCGGACATTCACGAGAAGATCCAGACGTTCCCAGAAGGATTCGACACCCAGGTGGGCGAGAGGGGTCTGAAGCTGAGCGGGGGGGAGAAGCAGAGGGTGGCTATCGCCCGCACCATCCTCAAGGCCCCTCAGATCATCCTGCTGGATGAGGCCACATCTGCTCTCGACACACAGACGGAGCGCAACATTCAGGCATCGCTCACCAAAGTGTGCTCCAATCGGACCACCATCGTCGTGGCTCACAGgttgtcgaCCATCATCGGTGCCAACCAGATTCTTGTACTAAGTGATGGTCAGATAGCAGAGCGAGGACGGCATGATGAGCTGCTAGCTAAGGAAGGGTTGTACTGTGACATGTGGATGAAGCAGCAACAGGCACAGGACTCCGACTCAGCCTCTGACACCGAAGCCAAAGACAGGAAGTCTTGAGAAACTACAGCCCCCATCAGTCACTGCAGGCCACAGGAGCCACTGAGTCTTGAGTGAGAGGTTAAGAATATGTAGACATtgtgaggagacagaggaggacaaAGAGGGACGCAGGGAGAAGATTAGATACCTCAAAAGgctgttttgtattttttaggGTATCCGTCCATCGAGGTTAATTCTGTTATGAGTAAAGTTTTAAGCACATATTTATTGGGTATTTTATGTTTGATCATTCAATCAAAATGTTTGTACCGTGAATGCCTCAGGCCAGTTGTTTTTAAGTGTATTCAGGATCGTGTTCATTAGGTTAAttaacagattttttttattaagtagtcccccccccccctttctgcaAGTTACGGGCACGTTTAGAAGCCAAATGTTCCCTCCCCTTCCAAAATTTGAACGATGCAAACACCTGCAAAATCATGATTTCTCCAAATGATCTGTGGCTGTTGTCTCATCCCACAGTCTGTTGAAAAACACTACTGTACCAGTTATGTTACGTGCGTCTGTGCAGGAGTGATTAGTGCGGACTGATTCAGTATAATCCGTCTTCTTGCTGTCTGAAGTCGTTTGATTGCAGCCGTCCACAGAAGCGGCAGCAAGTCCAAAGTAGACGAATACCTTAAGCGCAGGTATCGGCAGTTTGGCACAGTCTCACGACACTTTAAATGGTTGACTAATGTTTAGGGGTTGAGAAGTGAATTTGTTGTATTTACAGCAGATCTTATTGAACAGGTTCATTGTAAATGAGATTTTTAGAGCTGCATCAATTTTACTCCAATCAGACTTGGGCATTGTCATGTACAGTACAGTCAAGGTGTTGACTGATACATGTAAAACTTTGAATTGTCACCAATGGTGATCAATAAGAACTACTGGCAGTATATTAAAGAGAACAGAATCGATAGAATTGACAAAATTAGTAGCGGAAAAGCAAACCTTTATCTATGAATGAACCCAATCCTCAAGCCTGTATGCTGCTACCCGTTTTGAGTACAGAACTACTGTCAAGTGTATCTTTATTTTAATGGAAGAAATTAGTCTGTTTGAATTTGTAAATATCTATGCCTTGCATTCCCAAGGCAGTGTGGAGTTTGTCAGTATCTGTTGATAATAATCACACTCCATTTATTCATTGTCAAATTCTGTTTAATTGATTTTAAAAAGGGCCATAAGGGAAGATCTAAGCCATTTAGCTgaactttagtttatttgataGAGAATGGGGACTTTAAATCTATGTTAAGTCTCCTAGGGTTACGGGTTTGGGGTTGAATTGGAAACTGTCTGCATTAATCAAGGGGACGTGAAAATGGACATACTTACCATCCATATAGTGCACAGCAGACTTTACATCATGAAAAGTTATTGCAGACTGTGAAATAAATAGATGAATCCCAAATGCATTTGAGCATTTGTGACTGCAGAAGTAATACCAAAGAGCTAGAGTTGTTATGCTAAAATAATTGCTCCACCACTACAGCAGTCAAACATTTGTAGGTGTACAATGTGCGCAAACTGGTGCAGTCAAATTATTTACACTAATGCACCATGAATTTGAAATGTTATCTGTGACATGAGTGACAttgacaccacaggaggttggttggtggcaccttcattggggagaacgggcttgtggcaatggctggagcggataggtggaatggtatcaaatacatgtgtttgatgccgttccatttgTGCCTTCCAGAAGTGTTTGTAAAGATATTAACTTCTTTGACACAATGTCAAACTTTTTTGAAATGTGATTTGGGGGCATAGTTTGTCTGTAGTGTGATCTTTGCCTTTGGAAGagtgacaatgtgtgtgtgtgtgtgtggcatctgTCCATGCCTGTAAGTCAAATACATCAATggtttgttttttctttgtatatatGTTAATAAATGGTACAATTAAATATGTATAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU672355 lncRNA downstream 45830 25325285 ~ 25326280 (-) True G589575
TU672370 lncRNA downstream 56810 25301454 ~ 25315300 (-) True G589590
TU672290 lncRNA downstream 157586 25203119 ~ 25214524 (-) False G589525
TU672417 lncRNA upstream 7311 25406711 ~ 25407033 (-) True G589631
TU672425 lncRNA upstream 14606 25414006 ~ 25414225 (-) True G589639
TU672434 lncRNA upstream 25462 25424862 ~ 25425294 (-) True G589648
TU672438 lncRNA upstream 29346 25428746 ~ 25428977 (-) True G589652
TU672392 lncRNA upstream 32981 25432381 ~ 25459552 (-) False nrp2a
XM_021608940.2 mRNA downstream 140 25363441 ~ 25371970 (-) True cnppd1
XM_036983061.1 mRNA downstream 10840 25358907 ~ 25361270 (-) True LOC110528818
XM_036983059.1 mRNA downstream 10841 25358907 ~ 25361269 (-) False LOC110528818
XM_036983060.1 mRNA downstream 10863 25358907 ~ 25361247 (-) False LOC110528818
XM_036983058.1 mRNA downstream 10872 25358907 ~ 25361238 (-) False LOC110528818
XM_036983064.1 mRNA upstream 32971 25432371 ~ 25498133 (-) False nrp2a
XM_036983065.1 mRNA upstream 38689 25438089 ~ 25498133 (-) False nrp2a
XM_036983070.1 mRNA upstream 151221 25550621 ~ 25657995 (-) False pard3ba
XM_036983071.1 mRNA upstream 151221 25550621 ~ 25657995 (-) False pard3ba
XM_036983072.1 mRNA upstream 151221 25550621 ~ 25657995 (-) False pard3ba
TU672303 other downstream 81505 25248680 ~ 25290605 (-) True LOC110527565
TU672308 other downstream 93236 25201406 ~ 25278874 (-) True G589529
TU671806 other downstream 393003 24971613 ~ 24979107 (-) True G589093
TU671692 other downstream 543410 24828488 ~ 24828700 (-) True G588987
TU669777 other downstream 1994409 23375012 ~ 23377701 (-) True G587242
TU672491 other upstream 145335 25544735 ~ 25545418 (-) True G589705
TU673308 other upstream 758593 26157993 ~ 26158305 (-) True G590443
TU674230 other upstream 1178769 26578169 ~ 26585507 (-) True LOC110527590
TU674725 other upstream 1766775 27166175 ~ 27166468 (-) True G591808
TU675224 other upstream 2083557 27482957 ~ 27483780 (-) True G592298

Expression Profile