RNA id: XM_021608946.2


Basic Information

Item Value
RNA id XM_021608946.2
length 6492
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110527576
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 25803550 ~ 25874508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGTGTTTCAGCCAGATAGTTGAGCAGACACTGCTCTGCTTCCTGTCTGCCTGCTCCGCTCCGCTCCCCTCCGtggctgagagaaagagaaaaaaaaatccctgtctagGCATGGGACTCTGGCTGCTGCAGCACTCGGCAGCTCCTCGCAGGGAATGACAACAGTTCACGTGGTCATTAGCTCCAGACGCTGAAGCAGGGGAACTACTCCGAAGCATAGCAGCTGCACCTGGTGTGTCTATCTATGCTGTGGCTTAAAGAGAGAGGCACGACAGAGCTATTCGGGACTCAGCAAAAAACGAGatcGTCGACAGAAAGTGCCTTCGACATTCTTACTTGAGCTGCCTGCCTGCACGTCTCCTCCACCGAGCCTGCAACATTCCCTCCCTTCGCTGTGACAGAAGATAGCTCAACCTCAGCCCCTGCCCTACCAACTCACCTTTTTCAGGCTCCGTCGCTGCACTAGAGAAACCCAAGCAGACCGATTTAACTGCAGAGGTTGGGGGAactgtctggccactctgccaaAACAcagagtgctgactgactcattCGGGCAAGTTTAGTCAATACCCAACCCAACGTCTACACCCACTTAATATTCTCGCCCAAGCAGTGCCATCACCCTCGAAATAGCACCAGTTTCAATTCTCTTCCCCCGCCACCCCTTCCTTCCCACTACCACCACATTCAGACGGTCCGTCAGTCCAGCCTGCCTCTGAGCATGCCCCCGTTGCTCTGTCAGTGGCCTGCACCTGGGACTAACTGATTGACGAGCGACGTCTCTTGATTGGCAGCTTCTCTGATAGCCGCCATCTCCCAAGCAGCGACCACATCTGGGTTGCAAATCCACCAGCTCTGCTGCTCTGAAGTCTGCAAGGGCAAACGACTTTCACTGATccacacaccttttttttttgCTACACTTTTAGTTGTTTTTCTAGCACACTGAAGAGCCATTAGAGTATAGCCTCTCCTTAAACAAGTGGCTAGCTTTACCCCACCTCGGCATTGCTATGGCTTTAAATATTGCTTCGATGCGAGACACAAAATGGCTGACGCTGGAGGTGTGCCGGCAGTTCCAGAGGGGGACATGTTCGCGGAGTGATGAGGAATGCAAATTTGCGCACCCACCCAAAAGCTGCCAGGTGGAGAACGGAAGGGTGATTGCCTGCTTTGACTCACTAAAGGGCCGATGCACGCGAGAGAACTGCAAATACCTCCACCCCCCGGCCCACCTCAAGACTCAGCTGGAGATCAACGGCCGCAACAACCTCATACAACAGAAGACGGCAGCAGCCATGTTGGCTCAACAGATGCCTTTCATGTTCCCTGGCACGACCATGCAGCCTACCATGCAGTCGTTTCCTATTAACCAGGGCCTGGGCTCCAGCCCGGGTCTGAGCTATGCTCCCTACCTGACCCACATGACCCACAGCATGGGCATGATGCCCACCGAGATGCTCCAGCCCAGCACCCAGAGTATCATCGTTCCCGGCAGCCCTCCCTGCTCCATGCAGAGCTCCTCCTCCAACCAGAAGCTGCTACGCACGGACAAGCTGGAGGTGTGCCGGGAGTTCCAGCGGGGCAACTGCGCGCGTGGCGAGACGGACTGCCGCTTCGCTCACCCCAGCGACAGCCCTATGATTGACACCAGCGACAACACGGTGACCGTGTGCATGGACTACATCAAGTCACGCTGCTCCCGGGAGAAGTGCAAGTACTTCCACCCGCCGGCCCACCTGCAGGCCAAGATCAAGGCTGCGCAGCACCAGGCCAACCAGACAGCCGTGGCCGCACAAGCCGCCGCCATgACTCAGTCGACTGCCAAAGCAATGAAGCGACCCCTCGAGGCAACTGTAGAACTGGCGTTCCCCCACGGCTGCCTGCAGCCCCTACCAAAGAGACCAGCGCTTGAGAAGAGCAACGGGGCCAGCTCGCTCTTTCACCCCAGTATGTTGCACTACCAGCAGGCCTTGGCCAACGCACAGCTGCAGCAGCAGACGGCTTTCTGTGGCTTTCCCACAGGGTCAGTCTTGTGCATGACTCCTGCTAGCAGCCTTGTACCCATGATGTACAGTGCTGCGCCTGCTATCTCTGCAACAACAACTCCTGCCACAAGTGTCCCCTACGCAGCAGCAGCGCCAGCCAATCAGATTATCCTGAAGTAACTGTCAGGAAAGAAATGGAGTGTCAAGAAGCTGCACTACAAAGCCCAAAACAGCCCTTCTGTACATACTACCTTCCCCTCCCACTACAGCAACCTGCATGCTAAGAGTGTAATACTACCAATTAACCATAAGACTTGAGTGCTGGTGTAAGAAGATACACATAACAAAAAGATGTATATGTATTGCTAGGAAACTATTGCCATGAAAATTATGACAAAAAAATGATATGTACTGAACTACAAACACTTAGTGGAGAGATGGTGACGAGTTCATTTTAACTATTGTTTTCTCTGTTAAAGTAATATGGgtcctttatatttttgttttcaaaACGGAACCTCGATCTGCACAAATGTTCACCCTTTGAAAACACCTTATTTGCACTATAAGAGAACTAGTGCTTATTGTCAAAAGTGCTTCATTGTTTTAAACAGGAGAGTCACAGAGAAGCCCATGGTTGCAACTGGCGCTCCAGACCAAGCTAGAAGGGATTGTTtaactttttgtttgttttaattatttttttaaagacaaaTGTTAGGGCAGACTATAGGCTTATGTTTACTCAATGACTGTCCTCTTAACAATGATTTGAACGtgctcccccaccctccatcacACCACCCCTTTAAAACGGTGTGGTATGCGCTCCATATGAACCACTTGCCAACATTTAATCTCTGGAAAACCAACGGCTTGCCAAACGAAAGTCATCGCGACTGACCGATTTGACGGACAGAAGCGATCGGAGTCGATCTGCAAGGTAACAGACGTGGAACAGCTTCGTGGCCAAAACGTGCAGTCGGGCCTCGTTTTTGTGCacatcctggggggggggggggataacctAGAATTTCAATTTCTTCTCATTTTGTAAAATTTTCAGTTTTAACTTTTGGATGGGTGCTGACATTGGCTTGtgggtgtatttgtgtgtatgtggttgGTTGGGTGGGAGCCTCAGAGGGGTCCGTGTTGGGGAGAGTTATACTGGCATCAGGGAGTGCTACTAGCCTATATGGCTCCGGTTTGTGTGCCATGGGCTTAACGAAAGCTTGCGGGTGGCTGAGAGCATGTGGCGGGAGGGAGCCTCAGCCTGATGGGCCAAGCCATAGACATCTGCCAGCAGACTGGAACAGGCAGAGTAAGTCCACCAGCGGCCCCAAAGTCAAGACCACAAGGACAAGGCCTTTGGGGGAGTTAGGGGTGGGGCTAGAAGGAGGGATAAGGGTGAGATCGGCTAGGGGTGAAACAAGTGCTACGActccaaaaaaaaaaagagagtaaAAAAAGGTGCATTCGAAGATGCTAGTCATCGTCGTGAGATGACTTGAAGTTTTTGACTGGAGGGCTATCTGTGACTGTCAGTCGTCACCCTGCTATCGCCGAGAATCCTGTTTCTATTTGAGAAAAACTGTAGAAGTGCCTAAAAATCCTTTAACTTTAAAACAGCAAGCATCTGGAGAAACATACTTTGTCAAAGAAAAAATAGGAATATACAAAAGGATGGTTCAAGCAAAGTTCCCAAAAGTATGTTGACCTATTTAGAGAAAAGACTATTCACTTTTCATGCAGATGCCATGGTTAAAGCAGTACCCTAGTGTTATTGTAAACATATATTTAACACGACAAAAAGTAACTTTCTGAAAAGAAGGTATATAAACTAACCAAGATAGCTTGGTAGAATGTTTGATAAATATTTCATTATGTAATATTTTGTTCTTACCATAGGTTTTTAGTAGTTTACATTGGAAAAAGTGATTGAGAATACAGGAaattgtgatgtgtgtgtgtaatgtatgtaaCGTGTCTCATACTTTTGAGAGTTTATATTCATGGTTGTAGCAGCAATGTATTCACGTTTATGTTTTATGATGTTAAGCATCAAGGTATGTGTGTCACCAGAACAATCCGTTATTTTATGCCATGATATAGTTAATAGTGTACTAGCATTGTTTTAGACCAACCTCCACGTTATTACCTAatatgttttatgagatgtatGTATTTAGACTCTAAATCACATTTCTTGATCCTACACAACCAATTATTTACCTTGTATGTGTGTTCAACAAAAAAAGATCAGAATCATGACATATTTTCATGGCGCTTGATCAACACAGACAATCCACAACGAGACACCTTTGGTTAAAAAATAATATGGCACTGGTCTTAGAatgattttttttctttatttttgttcaCTGAGATTTTCTTCTAAAAAGTTACAGTTTTAATGTAATTTTTGGTGTGGAAGGTGATCGAAGATTTTTTGGTAATTTATCGTATTTTATTGTTTTGTCAAATGAGTCAGAATGATGTAACCTATTCTATTTTGAAATGAATGTAATTTATTGAGCTGTGCGTCCCAACAGGGTCTGGTCTCTTTAGTCAGCCAATGAGATGCAGATCAGGAGCAAGGGGGTGGAGTCTTAAAAAGCCACCAATAGAATGCTACTGGATCTCCCTGGCCTTGTCATCAACACAGTTCATCGCATTACAGTAATGAGCAAAGCTTTAGAATTGCTTATATtgttcaacaaaaaaaaatagaaaataaaaaaagaatgtTAATTGTATAGGTGACATTTTAcccaaaaaataattttaaaaatatgtacttttCACTCTAGTATTTCATAACAATATTAAGTTGTTGCTGTGGCAACATAAAGTTGCAATTACTAAAGTTCTGTATTTTTGTAAATTATCTAATCGTTAAGTTTACTTTTTTTCTAGAACACTGCACACATCACTAGATTGTAAAGCAGATTTCAACATTTCTTATTTGTCGTGATTATGACAATTTTCCTTAGCAGCCTCTATAAAGGTGTAACTTTAACACTAAAGATGTAATAGACAAAGTTACCAATGATATTTAGGATGAAATTATAACAAATGATCTATTAATTGAGTAGTTAAGATGTACAACTTTTCCCCTGAGAAAGGACCACTGGTTTCATGCACACCAATGGGAAAATATTTATGAATGTAGTTTAAATTGTTTATCATCAGTTAAGGATTGCACTTCTTCtggtaaaataaaacatttcattaTTACCGATGGAACATTTCATTAGGTATGGCAAAGTTACTATACACCAGTAATACAGTAATTCTGTATAATAGTCACTACCAGTTTGTATCACAGAAATAACCTTTGAACATCttgcatgaaaaaaaaaaaaaaagtttttattaATAAACGATAACGTACTGAATGTTTCTAGTTATACCGAAAAACACAAAAAATAGTCTGCACATGAGACAAATAATTCAAGTTGTCCTCAAATGGGGTCATGGTTGTGCCCAAGAGAATGGAATTGTGCTGAGAAATGTAATTTATTTAAATGAAATGTGTTGACATTGACTGACTGATGATAAGAGTTAAATATATAAGCACTTGGGTCAGCGGAGCAGACACAGCTTATCCAAACACTTTGCCTTGTCGTTAGTCCATCGTGCTTAAGGTTTTATGTTCCAGCGCTGTTGAAAAGAAACTTTTAAAGGCTGTAAACTGGTCTCTGCTGAACATACttttttgtttatatatatataatgctaAAATGTAAACTTAAAACtatttttatttatatacatAAATTAAATTGTTTGAAGTTTTTActtttttgcatttttttttaaaggtgagGCCAAAAGGATTGACTGCTGTACAGAAAGCTGTCTTGTGTTCTAAGCCCCGTTCCAATACTTTAACACACCCTTCCTTACTTACTTTCGGATCTAACATTATTTGGTAGGTGTAAGCAACAGTTCTATCACATAGCTTTCCCCAATCCGGCCATGTCAGATTAGGTATTTCttcaaggaaggaaggaggaaggaacGATGCATTTGTTCAAGTATTGGAACAGGGCCCTATTATGTCCTTGTAGAGAGCTTGATGATGAGGGCTGTGGCCAACATGCGATGCTGAATGGTCCCTAAAAGGACTGCCGCTAGGGTCGTATTCACTAGGAAGCAAACGTGCCGAAACAGAAGGGACtaactgaacttgtccaataagaaacgcttgtTTTCGTTTAACATTGCAAAACGTTTCGCTACAGTGTGCACTATTGAATATTACCCAGGTAATGAATTGACTGCTTTGTCATCAGAAATGCAGTATCCCATCTActttgcaaaaatatatatagagagagtaaaAGACCCTCATTGGATTTTTAGTTTTGATGTAACCATTTTTCAGTTTTCTTTGTGCGTATAGTTTGTGCTATTTTATGTTACTAtagtcaaatgttttggttccagCAAGATAGTGTAAAATCTATTGAAATAAAGAAAAAATGGAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU672521 lncRNA upstream 203681 25587088 ~ 25603815 (+) False G589734
TU672160 lncRNA upstream 273310 25500850 ~ 25534186 (+) True G589404
TU672107 lncRNA upstream 375913 25431350 ~ 25431583 (+) True G589358
TU672096 lncRNA upstream 388464 25418455 ~ 25419032 (+) True G589347
TU672088 lncRNA upstream 400512 25406710 ~ 25406984 (+) True G589339
TU672719 lncRNA downstream 14442 25888950 ~ 25893964 (+) True G589909
TU672724 lncRNA downstream 29312 25903820 ~ 25954846 (+) True G589914
TU672751 lncRNA downstream 97922 25972430 ~ 26018945 (+) True G589936
TU672742 lncRNA downstream 109161 25983669 ~ 25988528 (+) True G589930
TU672812 lncRNA downstream 158952 26033460 ~ 26033669 (+) True G589995
LOC110528820 mRNA upstream 38395 25767227 ~ 25769101 (+) True LOC110528820
XM_021608939.2 mRNA upstream 461189 25342711 ~ 25346307 (+) True LOC110527571
XM_021608937.2 mRNA upstream 466186 25337411 ~ 25341310 (+) False mdh1b
XM_021608938.2 mRNA upstream 466186 25337860 ~ 25341310 (+) True mdh1b
NM_001124532.1 mRNA upstream 485571 25315200 ~ 25321925 (+) True LOC100136274
XM_021608958.2 mRNA downstream 20221 25894729 ~ 25903497 (+) True LOC110527578
XM_021608959.2 mRNA downstream 47211 25921719 ~ 25934364 (+) True LOC110527579
XM_036983082.1 mRNA downstream 65039 25939547 ~ 25949320 (+) True mrpl39
XM_021608961.2 mRNA downstream 81914 25956422 ~ 25972398 (+) True jam2a
XM_021608970.2 mRNA downstream 661275 26535783 ~ 26543684 (+) False n6amt1
TU672520 other upstream 198890 25603605 ~ 25608606 (+) True G589734
TU671438 other upstream 901915 24904331 ~ 24905581 (+) True G588755
TU670255 other upstream 1999496 23807722 ~ 23808000 (+) True G587660
TU670007 other upstream 2186127 23611352 ~ 23621369 (+) False LOC110527540
TU672748 other downstream 129422 26003930 ~ 26025309 (+) True G589933
TU673811 other downstream 678046 26552554 ~ 26553542 (+) True G590936
TU673831 other downstream 702899 26577407 ~ 26577933 (+) True G590949
TU675056 other downstream 1608542 27483050 ~ 27483796 (+) True G592134
TU675374 other downstream 1829075 27703583 ~ 27707294 (+) True G592445

Expression Profile