RNA id: XM_036983085.1


Basic Information

Item Value
RNA id XM_036983085.1
length 1779
RNA type mRNA
GC content 0.47
exon number 4
gene id cyyr1
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 26035647 ~ 26045458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAACAGAGTCATTTGAGAAAATAGCTTGCTGCGGGGGAGGGGAAGCGCTAGGACCCACTCCAGGGGGAAAGGGGAACAGAAGAAAACAGCGAGGAAAGAGTGAAGGAAACACTATCAGGGATACGAACACATGGAAGAAGAAACGAATTAGACTTTTCATTCTGATTTGAACAATTTTATGACTGGAGCAAAGATCCATTCATGTGCGTTCATGTCTCTCTTCgattgtactttttagagaaCTCCGTTTAATTGCGCATATCAGCGAGGTTTCGGCGAGCGACTGTGTCCCATAGTCTTTTTAGGCGCATGTCGATGGAAAACGCGGACGTCGTCGTTTGGGAATAACTGTGAGCAACATTTAGAACAAGTAGGCCTATGCTATCAGTCGATATGGAAAGAACAGAGGCAGCGGGGTGGAAATTCATACGGGACTCTCTCCTACTTTGTCTTTTTACCGGTCACAGTGAGGCCCAGTGTGATGGCTGTGTGGAGTACTGCTGTGAAGGCTCTCCGCCTTTCTGCTGCTCCTACTACGCCTTTATGGGAGATGTCCTCTCGGGCACGGCGATCTCAGGCATCGTGTTTGGTGTGGTGTTTCTGATGGGAGCGCTGGCGGccttcttcctgtgtgtgtgcatgtgtgtgaagaACGGGCGAGGGGCCCAGGTGGACGTGTTCAACACCTCCTACATCAACACTGTGTCCCAGGGCTACCCAGgacCCCCACCTCCCTACACCTATGACTATGAGATGTACCCTTCGGCCATGCGCCCCCCTCCCTACACCCCCACCCCACCTAGGACAGATAGCTACTCCCCTCCCCCTCCGTATCCGGGCTGTAATCGTAAATGACTTGAAGACAAAATGGAGAGTCCTGACCAGGCTACTTGCCTTTCTGAAGGAGCACATCATGGATTAAGCTTATGCAGTGTATTAGCAGGGAAAGATGAGACTGTACGCATATCCTTTCGAACCTCTGGATCACACAAAATAACTGCATGTGGACTGGACCACTTTGACCTTTTCTTGTGCGTGTGACTGGGTCAATTAAACTGAttggtgttttgtgtgtgtgtgtgtgtgtggggggggggggggtgaaaaccTCTGAATCACTCAAAATGACTGTGTGGACTGATCCACTTTTGAACATTTGATGTGGGGGTGGGGGTCAATCCAACTGATCAGCTTGTCGGGGGTGAAAACCACTAGTAGTATTTGACTCATATTCTTTGTCAATGAATATGAGTGAGGGGACAAAGTACGTAACTTTATTTGAAGATGTGGATCTTTGTTGTACCATTTCTCTGGTAGAGATGTCTGTTAGCTGGCTTTCCTTTAGGCCAATGCTCTTCCCTATCTTATTTCAACAAGGCAAAGGAGAGAAAACTGTAGCCTAGTCCTAGATATGTTTGTGCTCTATTGCCAATTCCTTTATGTGGCAATGACCTGAGGACATGGCGAAACAGCACAAACAAATCTGGGACCAGTCAATGAAAACTGTGTAAAACTATGAATTGTACCGTAGAAAAAGGATGGTAAAcatgaagtttcccctaggtacagatctagtaTCAGCTTCCCCTTCTCCCAATCCCAACCTTAACTATTAGTGGAGATACTACAAACCTGACCCAAGATCTAACAtataaatcaaactttatttgtcacatgcgctgaatacaacagaccttactgtgaaatgcttacttacggtcagatgccgagcagctGCCACAGCAGGcgttgatgcaaccggtcaggatgctcttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU673162 lncRNA downstream 86250 25939371 ~ 25949397 (-) True G590313
TU672910 lncRNA downstream 484164 25550648 ~ 25551483 (-) True pard3ba
TU672393 lncRNA downstream 535280 25459172 ~ 25500367 (-) True nrp2a
TU672448 lncRNA downstream 573794 25461562 ~ 25461853 (-) True G589662
TU672440 lncRNA downstream 595535 25439798 ~ 25440112 (-) True G589654
TU673203 lncRNA upstream 2464 26047922 ~ 26086045 (-) True adamts1
TU673254 lncRNA upstream 49500 26094958 ~ 26095403 (-) True G590397
TU673295 lncRNA upstream 100704 26146162 ~ 26146514 (-) True G590430
TU673405 lncRNA upstream 191201 26236659 ~ 26236859 (-) True G590539
TU673452 lncRNA upstream 224875 26270333 ~ 26270869 (-) True G590584
XM_021608965.2 mRNA downstream 10331 25983669 ~ 26025316 (-) True appa
XM_021608963.2 mRNA downstream 10332 25983669 ~ 26025315 (-) False appa
XM_021608964.2 mRNA downstream 10332 25983669 ~ 26025315 (-) False appa
XM_021608962.2 mRNA downstream 58440 25973398 ~ 25977207 (-) True atp5pf
XM_036983083.1 mRNA downstream 58638 25973398 ~ 25977009 (-) False atp5pf
XM_021608966.2 mRNA upstream 2307 26047765 ~ 26055447 (-) False adamts1
XM_036983086.1 mRNA upstream 2307 26047765 ~ 26055447 (-) False adamts1
XM_036983087.1 mRNA upstream 14911 26060369 ~ 26085630 (-) True LOC110527586
XM_036983090.1 mRNA upstream 50695 26096153 ~ 26137065 (-) False LOC110527587
XM_036983093.1 mRNA upstream 50695 26096153 ~ 26138387 (-) False LOC110527587
TU672491 other downstream 490229 25544735 ~ 25545418 (-) True G589705
TU672303 other downstream 745042 25248680 ~ 25290605 (-) True LOC110527565
TU672308 other downstream 756773 25201406 ~ 25278874 (-) True G589529
TU671806 other downstream 1056540 24971613 ~ 24979107 (-) True G589093
TU671692 other downstream 1206947 24828488 ~ 24828700 (-) True G588987
TU673308 other upstream 112535 26157993 ~ 26158305 (-) True G590443
TU674230 other upstream 532711 26578169 ~ 26585507 (-) True LOC110527590
TU674725 other upstream 1120717 27166175 ~ 27166468 (-) True G591808
TU675224 other upstream 1437499 27482957 ~ 27483780 (-) True G592298
TU677787 other upstream 2978949 29024407 ~ 29026049 (-) True G594636

Expression Profile